Metadata models and knowledge-graph schemas used by neuroscience archives and consortia.
The metadata models of the DANDI neurophysiology archive. Pydantic models in the dandischema library define Dandiset and asset metadata; versioned JSON Schemas plus a JSON-LD context are generated from them and published in the dandi/schema repository. The library also converts Dandiset metadata to DataCite for DOIs.
A set of metadata models and controlled terms for neuroscience graph databases, covering datasets, subjects, methods, software, models and brain atlases (SANDS).
File and metadata structure for datasets in the NIH SPARC programme on the peripheral nervous system, with curation tooling that maps to InterLex terms.
LinkML data models for the BRAIN Initiative Cell Atlas Network (BICAN) knowledgebase: taxonomies, assertions and evidence, library generation, anatomical structures, genome annotation, donors and a BICAN subset of Biolink. JSON Schema and Pydantic models are generated from the LinkML sources.
A JSON-LD schema for standardising assessments and questionnaires, with versioned items, scoring and provenance, plus a shared library of instruments.
An application ontology covering research, research subjects and research results in BICAN, linking experimental knowledge to how data is distributed. It builds on earlier BICCN and Brain Data Standards work.
Metadata schemas and curation documentation for BICAN data, each reviewed and standardized by the BICAN Metadata and Ontologies Integration Working Group (MOWG).
Open SHACL schemas for neuroscience data and provenance, originally developed within INCF and used by Blue Brain Nexus.
Other categories: Anatomy & Brain Regions · Atlases & Reference Spaces · Cell Types · Behavior & Cognition · Disease & Phenotype · Molecular & Synaptic · Neuroimaging & Events · Neurophysiology Data · Computational Modeling · Umbrella Terminologies
