{ "name": "NeuroSchema", "url": "https://neuroschema.org", "generatedAt": "2026-10-25T19:10:30.278Z", "run": { "id": "2026-10-25T19-10-16Z", "startedAt": "2026-10-25T19:10:16.517Z", "finishedAt": "2026-10-25T19:10:30.278Z", "scope": "full", "entryCount": 57, "trigger": "push", "evaluator": { "name": "neuroschema-evaluator", "version": "2.0.0", "rubricVersion": "3.0", "node": "v22.23.3" }, "commit": "9fd7260a5861a17775af942f1c250503e0ca5022", "ciRun": "https://github.com/tekrajchhetri/neuroschema/actions/runs/40224352580", "authenticated": { "github": true, "bioportal": false }, "sources": [ "HTTP link checks", "git smart-HTTP refs", "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "https://api.github.com", "https://www.ebi.ac.uk/ols4/api/v2", "https://service.tib.eu/ts4tib/api", "https://bioregistry.io/api", "https://obofoundry.org/registry/ontologies.jsonld", "https://api.crossref.org" ] }, "rubricVersion": "3.4", "categories": [ { "id": "anatomy", "name": "Anatomy & Brain Regions", "icon": "brain", "blurb": "Structures of the nervous system, from multi-species anatomy to species-specific brain region hierarchies." }, { "id": "atlases", "name": "Atlases & Reference Spaces", "icon": "grid", "blurb": "Coordinate frameworks and parcellations that anchor data to a common brain space." }, { "id": "cells", "name": "Cell Types", "icon": "cell", "blurb": "Neuron and glia types, cell taxonomies and the schemas used to annotate them." }, { "id": "behavior", "name": "Behavior & Cognition", "icon": "spark", "blurb": "Behaviors, mental processes, cognitive tasks and experimental paradigms." }, { "id": "disease", "name": "Disease & Phenotype", "icon": "pulse", "blurb": "Neurological and psychiatric diseases, clinical phenotypes and disorder-specific ontologies." }, { "id": "molecular", "name": "Molecular & Synaptic", "icon": "molecule", "blurb": "Genes, synaptic functions, neurotransmitters and other chemical entities." }, { "id": "imaging", "name": "Neuroimaging & Events", "icon": "scan", "blurb": "Standards for organising and describing MRI, EEG/MEG data, results and experimental events." }, { "id": "physiology", "name": "Neurophysiology Data", "icon": "wave", "blurb": "Schemas and terminologies for electrophysiology, optical physiology and behavioral recordings." }, { "id": "modeling", "name": "Computational Modeling", "icon": "node", "blurb": "Languages and ontologies for describing neuron, network and brain models." }, { "id": "metadata", "name": "Metadata & Knowledge Graphs", "icon": "graph", "blurb": "Metadata models and knowledge-graph schemas used by neuroscience archives and consortia." }, { "id": "terminology", "name": "Umbrella Terminologies", "icon": "book", "blurb": "Broad neuroscience vocabularies and term registries that span many domains." } ], "entries": [ { "id": "uberon", "acronym": "UBERON", "name": "Uber-anatomy Ontology", "category": "anatomy", "kind": "ontology", "description": "A cross-species anatomy ontology covering animals, with extensive coverage of nervous system structures. It is the common anatomy backbone for many cell, expression and phenotype resources.", "formats": [ "OWL", "OBO", "JSON" ], "species": [ "Multi-species" ], "maintainer": "Uberon community", "license": "CC BY 3.0", "homepage": "https://obophenotype.github.io/uberon/", "repository": "https://github.com/obophenotype/uberon", "download": "http://purl.obolibrary.org/obo/uberon.owl", "ols": "uberon", "obo": "uberon", "publications": [ { "title": "Uberon, an integrative multi-species anatomy ontology", "doi": "10.1186/gb-2012-13-1-r5", "year": 2012 } ], "usedBy": [ { "name": "CELLxGENE", "url": "https://cellxgene.cziscience.com/", "note": "Tissue annotation of single-cell datasets" }, { "name": "HuBMAP", "url": "https://hubmapconsortium.org/", "note": "Anatomical structures in the Human Reference Atlas" }, { "name": "BICAN", "url": "https://www.portal.brain-bican.org/", "note": "Brain region annotation" } ], "tags": [ "anatomy", "cross-species", "OBO Foundry" ], "url": "https://neuroschema.org/o/uberon/", "evaluation": { "links": { "homepage": { "url": "https://obophenotype.github.io/uberon/", "code": 200, "state": "ok", "lastModified": "2026-10-23T13:29:12.000Z", "checkedAt": "2026-10-25T19:10:17.829Z" }, "repository": { "url": "https://github.com/obophenotype/uberon", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:18.084Z" }, "download": { "url": "http://purl.obolibrary.org/obo/uberon.owl", "code": 200, "state": "ok", "resolvedUrl": "https://release-assets.githubusercontent.com/github-production-release-asset/564599/cbd39290-f596-4bec-ba91-8f07e590abf3?sp=r&sv=2018-11-09&sr=b&spr=https&se=2026-10-25T20%3A07%3A14Z&rscd=attachment%3B+filename%3Duberon.owl&rsct=application%2Foctet-stream&skoid=96c2d410-5711-43a1-aedd-ab1947aa7ab0&sktid=398a6654-997b-47e9-b12b-9515b896b4de&skt=2026-10-25T19%3A06%3A59Z&ske=2026-10-25T20%3A07%3A14Z&sks=b&skv=2018-11-09&sig=cthCHUwPFD%2BCEXvovqYACWPTg1umoipScp%2FzUWooFPQ%3D&jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmVsZWFzZS1hc3NldHMuZ2l0aHVidXNlcmNvbnRlbnQuY29tIiwia2V5Ijoia2V5MSIsImV4cCI6MTc5Mjk1NzIxOCwibmJmIjoxNzkyOTU1NDE4LCJwYXRoIjoicmVsZWFzZWFzc2V0cHJvZHVjdGlvbi5ibG9iLmNvcmUud2luZG93cy5uZXQifQ.fT-YKFf3FUHxmjwA5PI3UVMKSZEMtldxpMjOWphpdm4&response-content-disposition=attachment%3B%20filename%3Duberon.owl&response-content-type=application%2Foctet-stream", "lastModified": "2026-10-01T13:01:06.000Z", "checkedAt": "2026-10-25T19:10:18.686Z" } }, "github": { "slug": "obophenotype/uberon", "stars": 166, "forks": 42, "openIssues": 310, "pushedAt": "2026-10-24T15:12:22Z", "archived": false, "license": null, "latestRelease": { "tag": "v2026-10-01", "date": "2026-10-01T13:09:46Z", "url": "https://github.com/obophenotype/uberon/releases/tag/v2026-10-01" }, "source": "https://api.github.com/repos/obophenotype/uberon", "fetchedAt": "2026-10-25T19:10:18.327Z" }, "ols": { "portal": "OLS (EMBL-EBI)", "id": "uberon", "api": "v2", "title": "Uberon multi-species anatomy ontology", "iri": "http://purl.obolibrary.org/obo/uberon.owl", "versionIri": "http://purl.obolibrary.org/obo/uberon/releases/2026-10-01/uberon.owl", "version": "2026-10-01", "releaseDate": "2026-10-01", "terms": 26735, "properties": 556, "individuals": 67, "importsFrom": [ "bfo", "bspo", "caro", "chebi", "cl", "cob", "dc", "dcterms", "envo", "go", "iao", "nbo", "ncbitaxon", "oio", "omo", "owl", "pato", "pr", "rdfs", "ro", "so" ], "exportsTo": [ "addicto", "ado", "aeo", "agro", "aism", "amphx", "apollo_sv", "aro", "bao", "bcgo", "bcio", "bco", "bmont", "ccf", "ceph", "chmo", "cido", "cl", "clo", "clyh", "cob", "colao", "covoc", "cpont", "cteno", "dideo", "doid", "dron", "ecao", "eco", "ecocore", "ecto", "efo", "emro", "enm", "envo", "epio", "eupath", "exmo", "fao", "fbbi", "fbcv", "flopo", "fobi", "foodon", "fovt", "gallont", "gecko", "genepio", "geno", "go", "gsso", "hcao", "hp", "hra", "hso", "ico", "ido", "idocovid19", "idomal", "lepao", "maxo", "mco", "mfmo", "micro", "mondo", "mp", "nbo", "ncro", "ngbo", "oae", "oba", "obcs", "obi", "obib", "ohd", "ohmi", "ohpi", "omiabis", "omit", "omrse", "one", "ons", "ontoneo", "oostt", "opl", "opmi", "ornaseq", "ovae", "pain", "pato", "pbpko", "pcl", "pdro", "peco", "phipo", "plana", "planp", "po", "poro", "ppo", "prefer", "pride", "psdo", "pso", "rbo", "rehabo", "ro", "slso", "stato", "to", "txpo", "upheno", "valuesets", "vbo", "vo", "wbbt", "wbls", "wbphenotype", "xpo" ], "languages": [ "en" ], "loaded": "2026-10-25T00:11:54.156396472", "sourceFileTimestamp": "Sun Oct 25 00:11:47 UTC 2026", "obsolete": false, "status": "LOADED", "page": "https://www.ebi.ac.uk/ols4/ontologies/uberon", "source": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/uberon", "fetchedAt": "2026-10-25T19:10:18.571Z" }, "obo": { "id": "uberon", "status": "active", "domain": "anatomy and development", "license": "CC BY 3.0", "usages": [ { "user": "http://bgee.org/", "type": "annotation", "description": "Bgee is a database to retrieve and compare gene expression patterns between animal species. Bgee in using Uberon to annotate the site of expression, and Bgee curators one the major contributors to the ontology." }, { "user": "https://www.encodeproject.org/", "type": "annotation", "description": "The National Human Genome Research Institute (NHGRI) launched a public research consortium named ENCODE, the Encyclopedia Of DNA Elements, in September 2003, to carry out a project to identify all functional elements in the human genome sequence. The ENCODE DCC users Uberon to annotate samples" }, { "user": "http://fantom5-collaboration.gsc.riken.jp/", "type": "annotation", "description": "FANTOM5 is using Uberon and CL to annotate samples allowing for transcriptome analyses with cell-type and tissue-level specificity." }, { "user": "https://monarchinitiative.org/", "type": "query", "description": "Querying expression and phenotype data" }, { "user": "https://geneontology.org/", "type": "query", "description": "GO Database is used for querying for functional annotations relevant to a tissue" }, { "user": "http://phenoscape.org", "type": null, "description": "The Phenoscape project is both a major driver of and contributor to Uberon, contibuting thousands of terms. The teleost (bony fishes) component of Uberon was derived from the Teleost Anatomy Ontology, developed by the Phenoscape group. Most of the high level design of the skeletal system comes from the Vertebrate Skeletal Anatomy Ontology (VSAO), also created by the Phenoscape group. Phenoscape curators continue to extend the ontology, covering a wide variety of tetrapod structures, with an emphasis on the appendicular system." }, { "user": "https://neuinfo.org/", "type": "Database", "description": "Searchable collection of neuroscience data and ontology for neuroscience" }, { "user": "https://scicrunch.org/", "type": "Database", "description": "cooperative data platform to be used by diverse communities in making data more FAIR." }, { "user": "http://single-cell.clst.riken.jp/", "type": "Database", "description": "SCPortalen" }, { "user": "https://www.ebi.ac.uk/chembl/", "type": "Database", "description": "ChEMBL uses Uberon to describe organ/tissue information in assays" } ], "source": "https://obofoundry.org/registry/ontologies.jsonld", "fetchedAt": "2026-10-25T19:10:17.692Z" }, "bioportal": null, "citations": [ { "doi": "10.1186/gb-2012-13-1-r5", "count": 721, "source": "https://api.crossref.org/works/10.1186%2Fgb-2012-13-1-r5", "fetchedAt": "2026-10-25T19:10:18.018Z" } ], "git": { "commit": "1e64ea4b9427b8642e09692b288b892ae9d9e7d4", "ref": "master", "headTag": null, "latestTag": { "name": "v2026-10-01", "commit": "d225e8458efebec3d8df38fe936bf95fb3521d39", "url": "https://github.com/obophenotype/uberon/releases/tag/v2026-10-01" }, "tagCount": 45, "tagDates": [ "2021-02-12", "2021-07-06", "2021-07-21", "2021-07-24", "2021-07-27", "2021-09-29", "2021-10-01", "2021-11-12", "2021-11-28", "2022-02-21", "2022-04-05", "2022-04-18", "2022-05-17", "2022-05-27", "2022-06-20", "2022-06-30", "2022-08-19", "2022-09-30", "2022-12-13", "2023-01-09", "2023-02-14", "2023-03-15", "2023-04-19", "2023-05-23", "2023-06-28", "2023-07-25", "2023-09-05", "2023-10-27", "2023-12-08", "2024-01-18", "2024-02-20", "2024-03-22", "2024-05-13", "2024-07-02", "2024-08-07", "2024-09-03", "2024-11-25", "2025-01-15", "2025-04-09", "2025-05-28", "2025-08-15", "2025-12-04", "2026-04-01", "2026-06-23", "2026-10-01" ], "url": "https://github.com/obophenotype/uberon/tree/1e64ea4b9427b8642e09692b288b892ae9d9e7d4", "source": "https://github.com/obophenotype/uberon.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:18.149Z" }, "tib": { "portal": "TIB Terminology Service", "id": "uberon", "api": "v1", "title": "Uber-anatomy ontology", "iri": "http://purl.obolibrary.org/obo/uberon.owl", "versionIri": "http://purl.obolibrary.org/obo/uberon/releases/2025-08-15/uberon.owl", "version": "2025-08-15", "releaseDate": "2025-08-15", "terms": 26913, "properties": 558, "individuals": 67, "importsFrom": [], "exportsTo": [], "languages": [], "loaded": "2025-08-15T22:13:28.588+0000", "status": "SKIP", "page": "https://service.tib.eu/ts4tib/ontologies/uberon", "source": "https://service.tib.eu/ts4tib/api/ontologies/uberon", "fetchedAt": "2026-10-25T19:10:21.474Z" }, "dashboard": { "ns": "uberon", "checks": { "FP01 Open": "PASS", "FP02 Common Format": "PASS", "FP03 URIs": "PASS", "FP04 Versioning": "ERROR", "FP05 Scope": "PASS", "FP06 Textual Definitions": "WARN", "FP07 Relations": "INFO", "FP08 Documented": "PASS", "FP09 Plurality of Users": "PASS", "FP11 Locus of Authority": "PASS", "FP12 Naming Conventions": "PASS", "FP16 Maintenance": "PASS", "FP20 Responsiveness": "PASS", "ROBOT Report": "WARN" }, "robot": { "ERROR": 0, "INFO": 14, "WARN": 4677 }, "consistent": true, "unsatisfiable": 0, "classes": 17071, "axioms": 224897, "owl2dl": true, "reusedPct": 5.95, "usedBy": [ "aism", "amphx", "apollo_sv", "cido", "cl", "clo", "clyh", "cob", "cteno", "dideo", "doid", "ecao", "ecocore", "envo", "fao", "foodon", "fovt", "gallont", "gecko", "genepio", "geno", "gsso", "hp", "hso", "ido", "lepao", "maxo", "mco", "mondo", "mp", "nbo", "ncro", "oae", "oba", "obi", "obib", "ohd", "ohmi", "ons", "oostt", "opl", "ornaseq", "pato", "pcl", "plana", "po", "poro", "ppo", "rbo", "ro", "slso", "txpo", "upheno", "wbphenotype" ], "oboScore": 0.583, "summary": "ERROR", "checkedVersion": "http://purl.obolibrary.org/obo/uberon/releases/2026-06-19/uberon-base.owl", "checkedAt": "2026-07-18T13:44:19.483Z", "page": "https://dashboard.obofoundry.org/dashboard/uberon/dashboard.html", "source": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "fetchedAt": "2026-10-25T19:10:20.368Z" }, "quality": null, "oops": { "error": "fetch failed", "checkedAt": "2026-10-25T19:05:55.265Z", "source": "data/quality/uberon.json" }, "releases": { "dates": [ "2023-03-15", "2023-04-19", "2023-05-23", "2023-06-28", "2023-07-25", "2023-09-05", "2023-10-27", "2023-12-11", "2024-01-19", "2024-02-20", "2024-03-22", "2024-05-13", "2024-07-03", "2024-08-07", "2024-09-04", "2024-11-26", "2025-01-15", "2025-04-09", "2025-05-28", "2025-08-15", "2025-12-05", "2026-04-01", "2026-06-23", "2026-10-01" ], "lastYear": 4, "from": "GitHub releases" }, "bioregistry": { "prefix": "uberon", "name": "Uber Anatomy Ontology", "mappings": { "aberowl": "UBERON", "biocontext": "UBERON", "biodivportal": "UBERON", "bioportal": "UBERON", "cellosaurus.resource": "UBERON", "fairsharing": "FAIRsharing.4c0b6b", "go.resource": "UBERON", "miriam": "uberon", "n2t": "uberon", "obofoundry": "uberon", "ols": "uberon", "ontobee": "UBERON", "tib.ts": "uberon", "togoid": "Uberon", "wikidata.entity": "Q7876491", "wikidata.property": "P1554" }, "dependsOn": [ "bfo", "bspo", "chebi", "cl", "envo", "go", "nbo", "ncbitaxon", "omo", "pato", "pr", "ro" ], "appearsIn": [ "aism", "amphx", "chiro", "cl", "clo", "clyh", "colao", "cteno", "ecao", "ecocore", "ecto", "envo", "foodon", "fovt", "genepio", "go", "hso", "lepao", "maxo", "mco", "mfmo", "ons", "pcl", "plana", "poro", "zp" ], "license": "CC-BY-3.0", "version": "2026-10-01", "deprecated": false, "page": "https://bioregistry.io/uberon", "source": "https://bioregistry.io/api/registry/uberon", "fetchedAt": "2026-10-25T19:10:16.760Z" }, "artifact": { "source": "https://release-assets.githubusercontent.com/github-production-release-asset/564599/cbd39290-f596-4bec-ba91-8f07e590abf3?sp=r&sv=2018-11-09&sr=b&spr=https&se=2026-10-25T20%3A07%3A14Z&rscd=attachment%3B+filename%3Duberon.owl&rsct=application%2Foctet-stream&skoid=96c2d410-5711-43a1-aedd-ab1947aa7ab0&sktid=398a6654-997b-47e9-b12b-9515b896b4de&skt=2026-10-25T19%3A06%3A59Z&ske=2026-10-25T20%3A07%3A14Z&sks=b&skv=2018-11-09&sig=cthCHUwPFD%2BCEXvovqYACWPTg1umoipScp%2FzUWooFPQ%3D&jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmVsZWFzZS1hc3NldHMuZ2l0aHVidXNlcmNvbnRlbnQuY29tIiwia2V5Ijoia2V5MSIsImV4cCI6MTc5Mjk1NzIxOCwibmJmIjoxNzkyOTU1NDE4LCJwYXRoIjoicmVsZWFzZWFzc2V0cHJvZHVjdGlvbi5ibG9iLmNvcmUud2luZG93cy5uZXQifQ.fT-YKFf3FUHxmjwA5PI3UVMKSZEMtldxpMjOWphpdm4&response-content-disposition=attachment%3B%20filename%3Duberon.owl&response-content-type=application%2Foctet-stream", "versionIri": "http://purl.obolibrary.org/obo/uberon/releases/2026-10-01/uberon.owl", "etag": "\"0x8DF1FBC0E1B9BDC\"", "contentType": "application/octet-stream", "fetchedAt": "2026-10-25T19:10:18.703Z" }, "score": 96, "gross": 96, "earned": 96, "possible": 100, "qualityApplies": true, "penalty": { "score": 0, "reason": "active (last activity 2026-10-24)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.0 years → 4 × max(0, 0.0 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "A", "fair": 47, "breakdown": { "findable": { "score": 12, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 4, "max": 4, "detail": "purl.obolibrary.org" }, { "label": "Indexed in services (F4)", "pts": 5, "max": 5, "detail": "6: OLS, TIB, BioPortal, OBO Foundry, Bioregistry, FAIRsharing" }, { "label": "Citable reference (F2)", "pts": 3, "max": 3, "detail": "doi:10.1186/gb-2012-13-1-r5" } ], "notes": [] }, "accessible": { "score": 12, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "download HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 3, "max": 3, "detail": "OBO Foundry, Bioregistry" } ], "notes": [] }, "interoperable": { "score": 12, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL, OBO" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL, OBO" }, { "label": "References other vocabularies (I3)", "pts": 4, "max": 4, "detail": "imports 16: bfo, bspo, caro, chebi, cl, cob, envo, go…" } ], "notes": [] }, "reusable": { "score": 11, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "CC BY 3.0" }, { "label": "Release provenance (R1.2)", "pts": 4, "max": 4, "detail": "2026-10-01 (version IRI in the artefact)" }, { "label": "Community standards (R1.3)", "pts": 2, "max": 3, "detail": "OBO principles: 10/13 checks pass" } ], "notes": [ "Community standards (R1.3): OBO principles: 10/13 checks pass" ] }, "quality": { "score": 19, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 4, "max": 4, "detail": "imports BFO, COB" }, { "label": "Standard relations (RO)", "pts": 2, "max": 2, "detail": "imports RO" }, { "label": "Logical consistency", "pts": 6, "max": 6, "detail": "consistent, 0 unsatisfiable classes (OBO Dashboard)" }, { "label": "ROBOT report: no errors", "pts": 2, "max": 2, "detail": "0 errors" }, { "label": "ROBOT report: warning density", "pts": 1, "max": 2, "detail": "4677 warnings / 17071 classes = 0.27" }, { "label": "Scaled 15/16 → 20", "pts": 4, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "ROBOT report: warning density: 4677 warnings / 17071 classes = 0.27", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 15, "max": 16, "steps": [ { "label": "Recency", "pts": 10, "max": 10, "detail": "2026-10-24 → 0.0 months (≤ 3 months)" }, { "label": "Release cadence (12 months)", "pts": 5, "max": 6, "detail": "4 releases (GitHub releases)" } ], "notes": [ "Release cadence (12 months): 4 releases (GitHub releases)" ] }, "adoption": { "score": 15, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 7, "max": 7, "detail": "13 projects" }, { "label": "Reused by other ontologies", "pts": 4, "max": 4, "detail": "122: aism, amphx, apollo_sv, cido, cl, clo…" }, { "label": "Community signal", "pts": 4, "max": 5, "detail": "max(stars 166 → 4, citations 721 → 4)" } ], "notes": [ "Community signal: max(stars 166 → 4, citations 721 → 4)" ] } }, "lastActivity": "2026-10-24T15:12:22Z", "adopterCount": 13, "reuseCount": 122, "importCount": 16, "registries": [ "OLS", "TIB", "BioPortal", "OBO Foundry", "Bioregistry", "FAIRsharing" ], "evaluatedVersion": { "label": "2026-10-01", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/uberon/releases/2026-10-01/uberon.owl", "inArtefact": true, "all": [ { "label": "2026-10-01", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/uberon/releases/2026-10-01/uberon.owl", "inArtefact": true }, { "label": "2026-10-01", "from": "OLS", "value": "http://purl.obolibrary.org/obo/uberon/releases/2026-10-01/uberon.owl" }, { "label": "v2026-10-01", "from": "latest GitHub release", "value": "https://github.com/obophenotype/uberon/releases/tag/v2026-10-01" }, { "label": "v2026-10-01 + commit 1e64ea4", "from": "latest release tag; master evaluated at commit", "value": "1e64ea4b9427b8642e09692b288b892ae9d9e7d4", "release": "v2026-10-01" }, { "label": "commit 1e64ea4", "from": "master at evaluation time", "value": "1e64ea4b9427b8642e09692b288b892ae9d9e7d4" }, { "label": "file of 2026-10-01", "from": "Last-Modified of the download", "value": "2026-10-01T13:01:06.000Z" } ] }, "evaluatedAt": "2026-10-25T19:10:23.527Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "CELLxGENE", "url": "https://cellxgene.cziscience.com/", "note": "Tissue annotation of single-cell datasets", "source": "curated" }, { "name": "HuBMAP", "url": "https://hubmapconsortium.org/", "note": "Anatomical structures in the Human Reference Atlas", "source": "curated" }, { "name": "BICAN", "url": "https://www.portal.brain-bican.org/", "note": "Brain region annotation", "source": "curated" }, { "name": "bgee.org", "url": "http://bgee.org/", "note": "Bgee is a database to retrieve and compare gene expression patterns between animal species. Bgee in using Uberon to annotate the site of expression, and Bgee curators one the major contributors to the ontology.", "source": "OBO Foundry registry" }, { "name": "encodeproject.org", "url": "https://www.encodeproject.org/", "note": "The National Human Genome Research Institute (NHGRI) launched a public research consortium named ENCODE, the Encyclopedia Of DNA Elements, in September 2003, to carry out a project to identify all functional elements in the human genome sequence. The ENCODE DCC users Uberon to annotate samples", "source": "OBO Foundry registry" }, { "name": "fantom5-collaboration.gsc.riken.jp", "url": "http://fantom5-collaboration.gsc.riken.jp/", "note": "FANTOM5 is using Uberon and CL to annotate samples allowing for transcriptome analyses with cell-type and tissue-level specificity.", "source": "OBO Foundry registry" }, { "name": "monarchinitiative.org", "url": "https://monarchinitiative.org/", "note": "Querying expression and phenotype data", "source": "OBO Foundry registry" }, { "name": "geneontology.org", "url": "https://geneontology.org/", "note": "GO Database is used for querying for functional annotations relevant to a tissue", "source": "OBO Foundry registry" }, { "name": "phenoscape.org", "url": "http://phenoscape.org", "note": "The Phenoscape project is both a major driver of and contributor to Uberon, contibuting thousands of terms. The teleost (bony fishes) component of Uberon was derived from the Teleost Anatomy Ontology, developed by the Phenoscape group. Most of the high level design of the skeletal system comes from the Vertebrate Skeletal Anatomy Ontology (VSAO), also created by the Phenoscape group. Phenoscape curators continue to extend the ontology, covering a wide variety of tetrapod structures, with an emphasis on the appendicular system.", "source": "OBO Foundry registry" }, { "name": "neuinfo.org", "url": "https://neuinfo.org/", "note": "Searchable collection of neuroscience data and ontology for neuroscience", "source": "OBO Foundry registry" }, { "name": "scicrunch.org", "url": "https://scicrunch.org/", "note": "cooperative data platform to be used by diverse communities in making data more FAIR.", "source": "OBO Foundry registry" }, { "name": "single-cell.clst.riken.jp", "url": "http://single-cell.clst.riken.jp/", "note": "SCPortalen", "source": "OBO Foundry registry" }, { "name": "ebi.ac.uk", "url": "https://www.ebi.ac.uk/chembl/", "note": "ChEMBL uses Uberon to describe organ/tissue information in assays", "source": "OBO Foundry registry" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 100, "grade": "A", "fair": null, "version": "2026-10-01", "terms": 26735, "stars": 166, "license": "CC BY 3.0", "lastActivity": "2026-10-24T15:12:22Z", "adopters": 13, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 100, "grade": "A", "fair": 60, "version": "2026-10-01", "terms": 26735, "stars": 166, "license": "CC BY 3.0", "lastActivity": "2026-10-24T15:12:22Z", "adopters": 13, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 100, "grade": "A", "fair": 60, "version": "2026-10-01", "terms": 26735, "stars": 166, "license": "CC BY 3.0", "lastActivity": "2026-10-24T15:12:22Z", "adopters": 13, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 96, "grade": "A", "fair": 47, "version": "2026-10-01", "terms": 26735, "stars": 166, "license": "CC BY 3.0", "lastActivity": "2026-10-24T15:12:22Z", "adopters": 13, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 96, "grade": "A", "fair": 47, "version": "2026-10-01", "terms": 26735, "stars": 166, "license": "CC BY 3.0", "lastActivity": "2026-10-24T15:12:22Z", "adopters": 13, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 96, "grade": "A", "fair": 47, "version": "2026-10-01", "terms": 26735, "stars": 166, "license": "CC BY 3.0", "lastActivity": "2026-10-24T15:12:22Z", "adopters": 13, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 100 → 96 · rubric v2.2 → v3.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/uberon/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "http://purl.obolibrary.org/obo/uberon.owl", "neuroschema:evaluatedVersion": "http://purl.obolibrary.org/obo/uberon/releases/2026-10-01/uberon.owl" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://obophenotype.github.io/uberon/", "prov:atTime": "2026-10-25T19:10:17.829Z" }, { "@id": "https://github.com/obophenotype/uberon", "prov:atTime": "2026-10-25T19:10:18.084Z" }, { "@id": "http://purl.obolibrary.org/obo/uberon.owl", "prov:atTime": "2026-10-25T19:10:18.686Z" }, { "@id": "https://release-assets.githubusercontent.com/github-production-release-asset/564599/cbd39290-f596-4bec-ba91-8f07e590abf3?sp=r&sv=2018-11-09&sr=b&spr=https&se=2026-10-25T20%3A07%3A14Z&rscd=attachment%3B+filename%3Duberon.owl&rsct=application%2Foctet-stream&skoid=96c2d410-5711-43a1-aedd-ab1947aa7ab0&sktid=398a6654-997b-47e9-b12b-9515b896b4de&skt=2026-10-25T19%3A06%3A59Z&ske=2026-10-25T20%3A07%3A14Z&sks=b&skv=2018-11-09&sig=cthCHUwPFD%2BCEXvovqYACWPTg1umoipScp%2FzUWooFPQ%3D&jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmVsZWFzZS1hc3NldHMuZ2l0aHVidXNlcmNvbnRlbnQuY29tIiwia2V5Ijoia2V5MSIsImV4cCI6MTc5Mjk1NzIxOCwibmJmIjoxNzkyOTU1NDE4LCJwYXRoIjoicmVsZWFzZWFzc2V0cHJvZHVjdGlvbi5ibG9iLmNvcmUud2luZG93cy5uZXQifQ.fT-YKFf3FUHxmjwA5PI3UVMKSZEMtldxpMjOWphpdm4&response-content-disposition=attachment%3B%20filename%3Duberon.owl&response-content-type=application%2Foctet-stream", "prov:atTime": "2026-10-25T19:10:18.703Z" }, { "@id": "https://github.com/obophenotype/uberon.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:18.149Z" }, { "@id": "https://api.github.com/repos/obophenotype/uberon", "prov:atTime": "2026-10-25T19:10:18.327Z" }, { "@id": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/uberon", "prov:atTime": "2026-10-25T19:10:18.571Z" }, { "@id": "https://service.tib.eu/ts4tib/api/ontologies/uberon", "prov:atTime": "2026-10-25T19:10:21.474Z" }, { "@id": "https://obofoundry.org/registry/ontologies.jsonld", "prov:atTime": "2026-10-25T19:10:17.692Z" }, { "@id": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "prov:atTime": "2026-10-25T19:10:20.368Z" }, { "@id": "https://bioregistry.io/api/registry/uberon", "prov:atTime": "2026-10-25T19:10:16.760Z" }, { "@id": "https://api.crossref.org/works/10.1186%2Fgb-2012-13-1-r5", "prov:atTime": "2026-10-25T19:10:18.018Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:23.527Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#uberon" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#uberon" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#uberon" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#uberon" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#uberon" } ] } }, { "id": "fma", "acronym": "FMA", "name": "Foundational Model of Anatomy", "category": "anatomy", "kind": "ontology", "description": "A detailed reference ontology of human anatomy, including fine-grained neuroanatomy. Marked inactive in the OBO Foundry; much of its neuro content is cross-referenced from Uberon.", "formats": [ "OWL" ], "species": [ "Human" ], "maintainer": "University of Washington Structural Informatics Group", "homepage": "http://si.washington.edu/projects/fma", "download": "http://purl.obolibrary.org/obo/fma.owl", "ols": "fma", "obo": "fma", "publications": [ { "title": "A reference ontology for biomedical informatics: the Foundational Model of Anatomy", "doi": "10.1016/j.jbi.2003.11.007", "year": 2003 } ], "usedBy": [], "tags": [ "anatomy", "human" ], "url": "https://neuroschema.org/o/fma/", "evaluation": { "links": { "homepage": { "url": "http://si.washington.edu/projects/fma", "code": 200, "state": "ok", "resolvedUrl": "http://si.washington.edu/projects/fma/", "checkedAt": "2026-10-25T19:10:18.364Z" }, "repository": null, "download": { "url": "http://purl.obolibrary.org/obo/fma.owl", "code": 200, "state": "ok", "resolvedUrl": "http://sig.biostr.washington.edu/share/downloads/fma/release/latest/fma.owl", "lastModified": "2026-05-23T02:28:15.000Z", "checkedAt": "2026-10-25T19:10:20.278Z" } }, "github": null, "ols": { "portal": "OLS (EMBL-EBI)", "id": "fma", "api": "v2", "title": "Foundational Model of Anatomy Ontology", "iri": "http://purl.org/sig/ont/fma.owl", "versionIri": "http://purl.org/sig/ont/fma_5.1.0.owl", "version": "5.1.0", "releaseDate": null, "terms": 104721, "properties": 216, "individuals": 2, "importsFrom": [ "dc", "dcterms" ], "exportsTo": [], "languages": [ "en" ], "loaded": "2026-10-25T00:16:04.955979312", "sourceFileTimestamp": "Sun Oct 25 00:13:29 UTC 2026", "obsolete": false, "status": "LOADED", "page": "https://www.ebi.ac.uk/ols4/ontologies/fma", "source": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/fma", "fetchedAt": "2026-10-25T19:10:18.368Z" }, "obo": { "id": "fma", "status": "inactive", "domain": null, "license": "CUSTOM", "usages": [], "source": "https://obofoundry.org/registry/ontologies.jsonld", "fetchedAt": "2026-10-25T19:10:17.692Z" }, "bioportal": null, "citations": [ { "doi": "10.1016/j.jbi.2003.11.007", "count": 717, "source": "https://api.crossref.org/works/10.1016%2Fj.jbi.2003.11.007", "fetchedAt": "2026-10-25T19:10:17.731Z" } ], "git": null, "tib": null, "dashboard": null, "quality": { "error": "file is 208 MB (limit 150 MB)", "source": "data/quality/fma.json" }, "oops": { "error": "fetch failed", "checkedAt": "2026-10-25T19:06:07.130Z", "source": "data/quality/fma.json" }, "releases": { "dates": [], "lastYear": 0, "from": null }, "bioregistry": { "prefix": "fma", "name": "Foundational Model of Anatomy", "mappings": { "aberowl": "FMA", "bartoc": "571", "biocontext": "FMA", "biolink.resource": "FMA", "bioportal": "FMA", "edam.data": "1182", "fairsharing": "FAIRsharing.x56jsy", "go.resource": "FMA", "hl7": "6.119", "integbio": "nbdc00273", "miriam": "fma", "n2t": "fma", "obofoundry": "fma", "ols": "fma", "ontobee": "FMA", "prefixcommons": "fma", "wikidata.entity": "Q1406710", "wikidata.property": "P1402" }, "dependsOn": [], "appearsIn": [], "license": "CC-BY-4.0", "version": "5.1.0", "deprecated": true, "page": "https://bioregistry.io/fma", "source": "https://bioregistry.io/api/registry/fma", "fetchedAt": "2026-10-25T19:10:16.755Z" }, "artifact": { "source": "http://sig.biostr.washington.edu/share/downloads/fma/release/latest/fma.owl", "versionIri": "http://purl.org/sig/ont/fma_5.1.0.owl", "versionInfo": "5.1.0", "etag": "\"c668c1c-65272e5cb8693\"", "contentType": "application/rdf+xml", "fetchedAt": "2026-10-25T19:10:20.480Z" }, "score": 40, "gross": 50, "earned": 50, "possible": 100, "qualityApplies": true, "penalty": { "score": -10, "reason": "inactive in OBO Foundry", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.4 years → 4 × max(0, 0.4 − 1)" }, { "label": "Inactive status", "pts": -10, "detail": "inactive in OBO Foundry" } ] }, "grade": "D", "fair": 38, "breakdown": { "findable": { "score": 12, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 4, "max": 4, "detail": "purl.obolibrary.org" }, { "label": "Indexed in services (F4)", "pts": 5, "max": 5, "detail": "5: OLS, BioPortal, OBO Foundry, Bioregistry, FAIRsharing" }, { "label": "Citable reference (F2)", "pts": 3, "max": 3, "detail": "doi:10.1016/j.jbi.2003.11.007" } ], "notes": [] }, "accessible": { "score": 12, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "download HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 3, "max": 3, "detail": "OBO Foundry, Bioregistry" } ], "notes": [] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 6, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 2, "max": 5, "detail": "CUSTOM (not a recognised open license)" }, { "label": "Release provenance (R1.2)", "pts": 4, "max": 4, "detail": "5.1.0 (version IRI in the artefact)" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): CUSTOM (not a recognised open license)", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 0, "max": 4, "detail": "no BFO/COB/DOLCE import found" }, { "label": "Standard relations (RO)", "pts": 0, "max": 2, "detail": "does not import the Relation Ontology" }, { "label": "Logical consistency", "pts": 0, "max": 6, "detail": "never checked by a reasoner" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "ROBOT report: warning density", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "Scaled 0/16 → 20", "pts": 0, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "Upper-ontology alignment: no BFO/COB/DOLCE import found", "Standard relations (RO): does not import the Relation Ontology", "Logical consistency: never checked by a reasoner", "ROBOT report: no errors: no ROBOT report available", "ROBOT report: warning density: no ROBOT report available", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 8, "max": 16, "steps": [ { "label": "Recency", "pts": 8, "max": 10, "detail": "2026-05-23 → 5.1 months (≤ 6 months)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases" } ], "notes": [ "Recency: 2026-05-23 → 5.1 months (≤ 6 months)", "Release cadence (12 months): 0 releases" ] }, "adoption": { "score": 4, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 0, "max": 7, "detail": "0 projects" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 4, "max": 5, "detail": "max(stars 0 → 0, citations 717 → 4)" } ], "notes": [ "Documented adopting projects: 0 projects", "Reused by other ontologies: 0", "Community signal: max(stars 0 → 0, citations 717 → 4)" ] } }, "lastActivity": "2026-05-23T02:28:15.000Z", "adopterCount": 0, "reuseCount": 0, "importCount": 0, "registries": [ "OLS", "BioPortal", "OBO Foundry", "Bioregistry", "FAIRsharing" ], "evaluatedVersion": { "label": "5.1.0", "from": "version IRI in the artefact", "value": "http://purl.org/sig/ont/fma_5.1.0.owl", "inArtefact": true, "all": [ { "label": "5.1.0", "from": "version IRI in the artefact", "value": "http://purl.org/sig/ont/fma_5.1.0.owl", "inArtefact": true }, { "label": "5.1.0", "from": "version info in the artefact", "value": "5.1.0", "inArtefact": true }, { "label": "5.1.0", "from": "OLS", "value": "http://purl.org/sig/ont/fma_5.1.0.owl" }, { "label": "file of 2026-05-23", "from": "Last-Modified of the download", "value": "2026-05-23T02:28:15.000Z" } ] }, "evaluatedAt": "2026-10-25T19:10:20.482Z", "runId": "2026-10-25T19-10-16Z", "adopters": [] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 65, "grade": "B", "fair": null, "version": "5.1.0", "terms": 104721, "stars": null, "license": "CUSTOM", "lastActivity": "2026-05-23T02:28:15.000Z", "adopters": 0, "links": { "homepage": "ok", "download": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 72, "grade": "B", "fair": 60, "version": "5.1.0", "terms": 104721, "stars": null, "license": "CUSTOM", "lastActivity": "2026-05-23T02:28:15.000Z", "adopters": 0, "links": { "homepage": "ok", "download": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 62, "grade": "C", "fair": 60, "version": "5.1.0", "terms": 104721, "stars": null, "license": "CUSTOM", "lastActivity": "2026-05-23T02:28:15.000Z", "adopters": 0, "links": { "homepage": "ok", "download": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 40, "grade": "D", "fair": 38, "version": "5.1.0", "terms": 104721, "stars": null, "license": "CUSTOM", "lastActivity": "2026-05-23T02:28:15.000Z", "adopters": 0, "links": { "homepage": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 40, "grade": "D", "fair": 38, "version": "5.1.0", "terms": 104721, "stars": null, "license": "CUSTOM", "lastActivity": "2026-05-23T02:28:15.000Z", "adopters": 0, "links": { "homepage": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 40, "grade": "D", "fair": 38, "version": "5.1.0", "terms": 104721, "stars": null, "license": "CUSTOM", "lastActivity": "2026-05-23T02:28:15.000Z", "adopters": 0, "links": { "homepage": "ok", "download": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 62 → 40 (grade C → D) · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 72 → 62 (grade B → C) · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 65 → 72 · rubric v1.0 → v2.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/fma/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "http://purl.obolibrary.org/obo/fma.owl", "neuroschema:evaluatedVersion": "http://purl.org/sig/ont/fma_5.1.0.owl" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "http://si.washington.edu/projects/fma", "prov:atTime": "2026-10-25T19:10:18.364Z" }, { "@id": "http://purl.obolibrary.org/obo/fma.owl", "prov:atTime": "2026-10-25T19:10:20.278Z" }, { "@id": "http://sig.biostr.washington.edu/share/downloads/fma/release/latest/fma.owl", "prov:atTime": "2026-10-25T19:10:20.480Z" }, { "@id": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/fma", "prov:atTime": "2026-10-25T19:10:18.368Z" }, { "@id": "https://obofoundry.org/registry/ontologies.jsonld", "prov:atTime": "2026-10-25T19:10:17.692Z" }, { "@id": "https://bioregistry.io/api/registry/fma", "prov:atTime": "2026-10-25T19:10:16.755Z" }, { "@id": "https://api.crossref.org/works/10.1016%2Fj.jbi.2003.11.007", "prov:atTime": "2026-10-25T19:10:17.731Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:20.482Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#fma" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#fma" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#fma" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#fma" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#fma" } ] } }, { "id": "mba", "acronym": "MBA", "name": "Allen Mouse Brain Atlas Ontology", "category": "anatomy", "kind": "ontology", "description": "The hierarchy of adult mouse brain regions used by the Allen Mouse Brain Atlas and Common Coordinate Framework, packaged as an OWL ontology by the BICAN community.", "formats": [ "OWL", "OBO" ], "species": [ "Mouse" ], "maintainer": "Allen Institute / BICAN", "homepage": "https://atlas.brain-map.org/", "repository": "https://github.com/brain-bican/mouse_brain_atlas_ontology", "publications": [], "usedBy": [ { "name": "Allen Brain Atlas", "url": "https://atlas.brain-map.org/", "note": "Source region hierarchy" }, { "name": "BICAN", "url": "https://www.portal.brain-bican.org/", "note": "Mouse brain region annotation" } ], "tags": [ "Allen", "BICAN", "brain regions", "mouse" ], "download": "https://purl.brain-bican.org/ontology/mbao/mbao.owl", "url": "https://neuroschema.org/o/mba/", "evaluation": { "links": { "homepage": { "url": "https://atlas.brain-map.org/", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:16.964Z" }, "repository": { "url": "https://github.com/brain-bican/mouse_brain_atlas_ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:17.064Z" }, "download": { "url": "https://purl.brain-bican.org/ontology/mbao/mbao.owl", "code": 200, "state": "ok", "resolvedUrl": "https://github.com/brain-bican/purl.brain-bican.org/", "checkedAt": "2026-10-25T19:10:18.001Z" } }, "github": { "slug": "brain-bican/mouse_brain_atlas_ontology", "stars": 0, "forks": 0, "openIssues": 5, "pushedAt": "2025-10-29T13:07:17Z", "archived": false, "license": null, "latestRelease": { "tag": "v2025-07-04", "date": "2025-07-04T14:45:18Z", "url": "https://github.com/brain-bican/mouse_brain_atlas_ontology/releases/tag/v2025-07-04" }, "source": "https://api.github.com/repos/brain-bican/mouse_brain_atlas_ontology", "fetchedAt": "2026-10-25T19:10:17.195Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [], "git": { "commit": "96ec7312da94b10d047ba84bc89cf3c2729f1811", "ref": "main", "headTag": null, "latestTag": { "name": "v2025-07-04", "commit": "01d70bed4a444fdf9886f1aaf2f3b7071d4082b5", "url": "https://github.com/brain-bican/mouse_brain_atlas_ontology/releases/tag/v2025-07-04" }, "tagCount": 3, "tagDates": [ "2025-02-10", "2025-04-17", "2025-07-04" ], "url": "https://github.com/brain-bican/mouse_brain_atlas_ontology/tree/96ec7312da94b10d047ba84bc89cf3c2729f1811", "source": "https://github.com/brain-bican/mouse_brain_atlas_ontology.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:16.816Z" }, "tib": null, "dashboard": null, "quality": { "reasoner": "ELK", "robotVersion": "ROBOT version 1.9.7", "consistent": null, "reasonError": "INVALID ONTOLOGY FILE ERROR Could not load a valid ontology from file: mba.owl\nFor details see: http://robot.obolibrary.org/errors#invalid-ontology-file-error\nUse the -vvv option to show the stack trace.\nUse the --help option to see usage information.\n", "checkedAt": "2026-10-25T19:06:11.076Z", "sha256": "8b458e9ca4c9d358c120b7593868acc03c2ec50ecac39cbb4961f1edb6045d69", "source": "data/quality/mba.json" }, "oops": { "error": "fetch failed", "checkedAt": "2026-10-25T19:06:21.123Z", "source": "data/quality/mba.json" }, "releases": { "dates": [ "2025-02-10", "2025-04-17", "2025-07-04" ], "lastYear": 0, "from": "GitHub releases" }, "bioregistry": null, "artifact": { "source": "https://github.com/brain-bican/purl.brain-bican.org/", "etag": "W/\"250d95f0926c552452837cb36dca268f\"", "contentType": "text/html", "fetchedAt": "2026-10-25T19:10:17.537Z" }, "score": 30, "gross": 30, "earned": 30, "possible": 100, "qualityApplies": true, "penalty": { "score": 0, "reason": "active (last activity 2025-10-29)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "1.0 years → 4 × max(0, 1.0 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 23, "breakdown": { "findable": { "score": 4, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 4, "max": 4, "detail": "purl.brain-bican.org" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Indexed in services (F4): not indexed anywhere", "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "download HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL, OBO" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL, OBO" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 2, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 2, "max": 4, "detail": "v2025-07-04 (latest GitHub release); not declared inside the artefact" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): v2025-07-04 (latest GitHub release); not declared inside the artefact", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 0, "max": 4, "detail": "no BFO/COB/DOLCE import found" }, { "label": "Standard relations (RO)", "pts": 0, "max": 2, "detail": "does not import the Relation Ontology" }, { "label": "Logical consistency", "pts": 0, "max": 6, "detail": "never checked by a reasoner" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "ROBOT report: warning density", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "Scaled 0/16 → 20", "pts": 0, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "Upper-ontology alignment: no BFO/COB/DOLCE import found", "Standard relations (RO): does not import the Relation Ontology", "Logical consistency: never checked by a reasoner", "ROBOT report: no errors: no ROBOT report available", "ROBOT report: warning density: no ROBOT report available", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 5, "max": 16, "steps": [ { "label": "Recency", "pts": 5, "max": 10, "detail": "2025-10-29 → 11.9 months (≤ 1 year)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases (GitHub releases)" } ], "notes": [ "Recency: 2025-10-29 → 11.9 months (≤ 1 year)", "Release cadence (12 months): 0 releases (GitHub releases)" ] }, "adoption": { "score": 2, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "2 projects" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 0, "max": 5, "detail": "max(stars 0 → 0, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 2 projects", "Reused by other ontologies: 0", "Community signal: max(stars 0 → 0, citations 0 → 0)" ] } }, "lastActivity": "2025-10-29T13:07:17Z", "adopterCount": 2, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": { "label": "v2025-07-04", "from": "latest GitHub release", "value": "https://github.com/brain-bican/mouse_brain_atlas_ontology/releases/tag/v2025-07-04", "all": [ { "label": "v2025-07-04", "from": "latest GitHub release", "value": "https://github.com/brain-bican/mouse_brain_atlas_ontology/releases/tag/v2025-07-04" }, { "label": "v2025-07-04 + commit 96ec731", "from": "latest release tag; main evaluated at commit", "value": "96ec7312da94b10d047ba84bc89cf3c2729f1811", "release": "v2025-07-04" }, { "label": "commit 96ec731", "from": "main at evaluation time", "value": "96ec7312da94b10d047ba84bc89cf3c2729f1811" } ] }, "evaluatedAt": "2026-10-25T19:10:18.332Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "Allen Brain Atlas", "url": "https://atlas.brain-map.org/", "note": "Source region hierarchy", "source": "curated" }, { "name": "BICAN", "url": "https://www.portal.brain-bican.org/", "note": "Mouse brain region annotation", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 59, "grade": "C", "fair": null, "version": null, "terms": null, "stars": 0, "license": null, "lastActivity": "2025-10-29T13:07:17Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 58, "grade": "C", "fair": 35, "version": "commit 96ec731", "terms": null, "stars": 0, "license": null, "lastActivity": "2025-10-29T13:07:17Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 63, "grade": "C", "fair": 40, "version": "v2025-07-04", "terms": null, "stars": 0, "license": null, "lastActivity": "2025-10-29T13:07:17Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 30, "grade": "D", "fair": 23, "version": "v2025-07-04 + commit 96ec731", "terms": null, "stars": 0, "license": null, "lastActivity": "2025-10-29T13:07:17Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 30, "grade": "E", "fair": 23, "version": "v2025-07-04", "terms": null, "stars": 0, "license": null, "lastActivity": "2025-10-29T13:07:17Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 23, "grade": "E", "fair": 16, "version": "v2025-07-04 + commit 96ec731", "terms": null, "stars": 0, "license": null, "lastActivity": "2025-10-29T13:07:17Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 30 → 23 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Evaluated version: v2025-07-04 → v2025-07-04 + commit 96ec731" }, { "at": "2026-10-25T19:10:30.278Z", "runId": "2026-10-25T19-10-16Z", "what": "Evaluated version: v2025-07-04 + commit 96ec731 → v2025-07-04" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 63 → 30 (grade C → D) · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Evaluated version: v2025-07-04 → v2025-07-04 + commit 96ec731" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 58 → 63 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Evaluated version: commit 96ec731 → v2025-07-04" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Download link: — → ok" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 59 → 58 · rubric v1.0 → v2.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Evaluated version: — → commit 96ec731" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/mba/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://purl.brain-bican.org/ontology/mbao/mbao.owl", "neuroschema:evaluatedVersion": "https://github.com/brain-bican/mouse_brain_atlas_ontology/releases/tag/v2025-07-04" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://atlas.brain-map.org/", "prov:atTime": "2026-10-25T19:10:16.964Z" }, { "@id": "https://github.com/brain-bican/mouse_brain_atlas_ontology", "prov:atTime": "2026-10-25T19:10:17.064Z" }, { "@id": "https://purl.brain-bican.org/ontology/mbao/mbao.owl", "prov:atTime": "2026-10-25T19:10:18.001Z" }, { "@id": "https://github.com/brain-bican/purl.brain-bican.org/", "prov:atTime": "2026-10-25T19:10:17.537Z" }, { "@id": "https://github.com/brain-bican/mouse_brain_atlas_ontology.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:16.816Z" }, { "@id": "https://api.github.com/repos/brain-bican/mouse_brain_atlas_ontology", "prov:atTime": "2026-10-25T19:10:17.195Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:18.332Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#mba" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#mba" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#mba" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#mba" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#mba" } ] } }, { "id": "dmba", "acronym": "DMBA", "name": "Developing Mouse Brain Atlas Ontology", "category": "anatomy", "kind": "ontology", "description": "Brain region hierarchy of the Allen Developing Mouse Brain Atlas, covering embryonic and postnatal stages.", "formats": [ "OWL", "OBO" ], "species": [ "Mouse" ], "maintainer": "Allen Institute / BICAN", "homepage": "https://developingmouse.brain-map.org/", "repository": "https://github.com/brain-bican/developing_mouse_brain_atlas_ontology", "publications": [], "usedBy": [ { "name": "Allen Developing Mouse Brain Atlas", "url": "https://developingmouse.brain-map.org/", "note": "Source region hierarchy" } ], "tags": [ "Allen", "BICAN", "brain regions", "development", "mouse" ], "download": "https://purl.brain-bican.org/ontology/dmbao/dmbao.owl", "url": "https://neuroschema.org/o/dmba/", "evaluation": { "links": { "homepage": { "url": "https://developingmouse.brain-map.org/", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:17.035Z" }, "repository": { "url": "https://github.com/brain-bican/developing_mouse_brain_atlas_ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:17.365Z" }, "download": { "url": "https://purl.brain-bican.org/ontology/dmbao/dmbao.owl", "code": 200, "state": "ok", "resolvedUrl": "https://github.com/brain-bican/purl.brain-bican.org/", "checkedAt": "2026-10-25T19:10:17.337Z" } }, "github": { "slug": "brain-bican/developing_mouse_brain_atlas_ontology", "stars": 0, "forks": 0, "openIssues": 1, "pushedAt": "2025-02-10T23:48:59Z", "archived": false, "license": null, "latestRelease": { "tag": "v2025-02-10", "date": "2025-02-10T23:48:58Z", "url": "https://github.com/brain-bican/developing_mouse_brain_atlas_ontology/releases/tag/v2025-02-10" }, "source": "https://api.github.com/repos/brain-bican/developing_mouse_brain_atlas_ontology", "fetchedAt": "2026-10-25T19:10:17.460Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [], "git": { "commit": "8a5c7344baddb123f31c43989ce57b011800ff90", "ref": "main", "headTag": "v2025-02-10", "latestTag": { "name": "v2025-02-10", "commit": "8a5c7344baddb123f31c43989ce57b011800ff90", "url": "https://github.com/brain-bican/developing_mouse_brain_atlas_ontology/releases/tag/v2025-02-10" }, "tagCount": 2, "tagDates": [ "2024-07-12", "2025-02-10" ], "url": "https://github.com/brain-bican/developing_mouse_brain_atlas_ontology/tree/8a5c7344baddb123f31c43989ce57b011800ff90", "source": "https://github.com/brain-bican/developing_mouse_brain_atlas_ontology.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:17.100Z" }, "tib": null, "dashboard": null, "quality": { "reasoner": "ELK", "robotVersion": "ROBOT version 1.9.7", "consistent": null, "reasonError": "INVALID ONTOLOGY FILE ERROR Could not load a valid ontology from file: dmba.owl\nFor details see: http://robot.obolibrary.org/errors#invalid-ontology-file-error\nUse the -vvv option to show the stack trace.\nUse the --help option to see usage information.\n", "checkedAt": "2026-10-25T19:06:24.127Z", "sha256": "3e2195ac3538846aa2864246e7b1d8d5eca47c7e8a917de677e8a965cfeae318", "source": "data/quality/dmba.json" }, "oops": { "error": "fetch failed", "checkedAt": "2026-10-25T19:06:34.616Z", "source": "data/quality/dmba.json" }, "releases": { "dates": [ "2024-07-12", "2025-02-10" ], "lastYear": 0, "from": "GitHub releases" }, "bioregistry": null, "artifact": { "source": "https://github.com/brain-bican/purl.brain-bican.org/", "etag": "W/\"250d95f0926c552452837cb36dca268f\"", "contentType": "text/html", "fetchedAt": "2026-10-25T19:10:17.712Z" }, "score": 24, "gross": 27, "earned": 27, "possible": 100, "qualityApplies": true, "penalty": { "score": -3, "reason": "1.7 years → 4 × max(0, 1.7 − 1)", "steps": [ { "label": "Time since last activity", "pts": -3, "detail": "1.7 years → 4 × max(0, 1.7 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 23, "breakdown": { "findable": { "score": 4, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 4, "max": 4, "detail": "purl.brain-bican.org" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Indexed in services (F4): not indexed anywhere", "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "download HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL, OBO" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL, OBO" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 2, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 2, "max": 4, "detail": "v2025-02-10 (latest GitHub release); not declared inside the artefact" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): v2025-02-10 (latest GitHub release); not declared inside the artefact", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 0, "max": 4, "detail": "no BFO/COB/DOLCE import found" }, { "label": "Standard relations (RO)", "pts": 0, "max": 2, "detail": "does not import the Relation Ontology" }, { "label": "Logical consistency", "pts": 0, "max": 6, "detail": "never checked by a reasoner" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "ROBOT report: warning density", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "Scaled 0/16 → 20", "pts": 0, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "Upper-ontology alignment: no BFO/COB/DOLCE import found", "Standard relations (RO): does not import the Relation Ontology", "Logical consistency: never checked by a reasoner", "ROBOT report: no errors: no ROBOT report available", "ROBOT report: warning density: no ROBOT report available", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 2, "max": 16, "steps": [ { "label": "Recency", "pts": 2, "max": 10, "detail": "2025-02-10 → 20.4 months (≤ 2 years)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases (GitHub releases)" } ], "notes": [ "Recency: 2025-02-10 → 20.4 months (≤ 2 years)", "Release cadence (12 months): 0 releases (GitHub releases)" ] }, "adoption": { "score": 2, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "1 project" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 0, "max": 5, "detail": "max(stars 0 → 0, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 1 project", "Reused by other ontologies: 0", "Community signal: max(stars 0 → 0, citations 0 → 0)" ] } }, "lastActivity": "2025-02-10T23:48:59Z", "adopterCount": 1, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": { "label": "v2025-02-10", "from": "latest GitHub release", "value": "https://github.com/brain-bican/developing_mouse_brain_atlas_ontology/releases/tag/v2025-02-10", "all": [ { "label": "v2025-02-10", "from": "latest GitHub release", "value": "https://github.com/brain-bican/developing_mouse_brain_atlas_ontology/releases/tag/v2025-02-10" }, { "label": "v2025-02-10", "from": "git tag on the evaluated commit", "value": "8a5c7344baddb123f31c43989ce57b011800ff90" }, { "label": "v2025-02-10 + commit 8a5c734", "from": "latest release tag; main evaluated at commit", "value": "8a5c7344baddb123f31c43989ce57b011800ff90", "release": "v2025-02-10" }, { "label": "commit 8a5c734", "from": "main at evaluation time", "value": "8a5c7344baddb123f31c43989ce57b011800ff90" } ] }, "evaluatedAt": "2026-10-25T19:10:18.069Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "Allen Developing Mouse Brain Atlas", "url": "https://developingmouse.brain-map.org/", "note": "Source region hierarchy", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 48, "grade": "D", "fair": null, "version": null, "terms": null, "stars": 0, "license": null, "lastActivity": "2025-02-10T23:48:59Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 50, "grade": "C", "fair": 35, "version": "commit 8a5c734", "terms": null, "stars": 0, "license": null, "lastActivity": "2025-02-10T23:48:59Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 52, "grade": "C", "fair": 40, "version": "v2025-02-10", "terms": null, "stars": 0, "license": null, "lastActivity": "2025-02-10T23:48:59Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 24, "grade": "D", "fair": 23, "version": "v2025-02-10", "terms": null, "stars": 0, "license": null, "lastActivity": "2025-02-10T23:48:59Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 24, "grade": "E", "fair": 23, "version": "v2025-02-10", "terms": null, "stars": 0, "license": null, "lastActivity": "2025-02-10T23:48:59Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 17, "grade": "E", "fair": 16, "version": "v2025-02-10", "terms": null, "stars": 0, "license": null, "lastActivity": "2025-02-10T23:48:59Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 24 → 17 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 52 → 24 (grade C → D) · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 50 → 52 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Evaluated version: commit 8a5c734 → v2025-02-10" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Download link: — → ok" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 48 → 50 (grade D → C) · rubric v1.0 → v2.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Evaluated version: — → commit 8a5c734" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/dmba/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://purl.brain-bican.org/ontology/dmbao/dmbao.owl", "neuroschema:evaluatedVersion": "https://github.com/brain-bican/developing_mouse_brain_atlas_ontology/releases/tag/v2025-02-10" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://developingmouse.brain-map.org/", "prov:atTime": "2026-10-25T19:10:17.035Z" }, { "@id": "https://github.com/brain-bican/developing_mouse_brain_atlas_ontology", "prov:atTime": "2026-10-25T19:10:17.365Z" }, { "@id": "https://purl.brain-bican.org/ontology/dmbao/dmbao.owl", "prov:atTime": "2026-10-25T19:10:17.337Z" }, { "@id": "https://github.com/brain-bican/purl.brain-bican.org/", "prov:atTime": "2026-10-25T19:10:17.712Z" }, { "@id": "https://github.com/brain-bican/developing_mouse_brain_atlas_ontology.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:17.100Z" }, { "@id": "https://api.github.com/repos/brain-bican/developing_mouse_brain_atlas_ontology", "prov:atTime": "2026-10-25T19:10:17.460Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:18.069Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#dmba" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#dmba" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#dmba" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#dmba" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#dmba" } ] } }, { "id": "hba", "acronym": "HBA", "name": "Human Brain Atlas Ontology", "category": "anatomy", "kind": "ontology", "description": "Adult human brain region hierarchy from the Allen Human Brain Atlas, packaged as an OWL ontology.", "formats": [ "OWL", "OBO" ], "species": [ "Human" ], "maintainer": "Allen Institute / BICAN", "homepage": "https://human.brain-map.org/", "repository": "https://github.com/brain-bican/human_brain_atlas_ontology", "publications": [], "usedBy": [ { "name": "Allen Human Brain Atlas", "url": "https://human.brain-map.org/", "note": "Source region hierarchy" } ], "tags": [ "Allen", "BICAN", "brain regions", "human" ], "download": "https://purl.brain-bican.org/ontology/hbao/hbao.owl", "url": "https://neuroschema.org/o/hba/", "evaluation": { "links": { "homepage": { "url": "https://human.brain-map.org/", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:17.202Z" }, "repository": { "url": "https://github.com/brain-bican/human_brain_atlas_ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:17.599Z" }, "download": { "url": "https://purl.brain-bican.org/ontology/hbao/hbao.owl", "code": 200, "state": "ok", "resolvedUrl": "https://github.com/brain-bican/purl.brain-bican.org/", "checkedAt": "2026-10-25T19:10:17.674Z" } }, "github": { "slug": "brain-bican/human_brain_atlas_ontology", "stars": 1, "forks": 0, "openIssues": 2, "pushedAt": "2025-02-10T23:22:34Z", "archived": false, "license": null, "latestRelease": { "tag": "v2025-02-10", "date": "2025-02-10T12:53:29Z", "url": "https://github.com/brain-bican/human_brain_atlas_ontology/releases/tag/v2025-02-10" }, "source": "https://api.github.com/repos/brain-bican/human_brain_atlas_ontology", "fetchedAt": "2026-10-25T19:10:17.718Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [], "git": { "commit": "3ff272135c917b0437edc4cab7d23bd25f05244b", "ref": "main", "headTag": null, "latestTag": { "name": "v2025-02-10", "commit": "4cc551b4b04a1c0cce5d6d7b985a37a140af7f39", "url": "https://github.com/brain-bican/human_brain_atlas_ontology/releases/tag/v2025-02-10" }, "tagCount": 2, "tagDates": [ "2024-07-12", "2025-02-10" ], "url": "https://github.com/brain-bican/human_brain_atlas_ontology/tree/3ff272135c917b0437edc4cab7d23bd25f05244b", "source": "https://github.com/brain-bican/human_brain_atlas_ontology.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:17.287Z" }, "tib": null, "dashboard": null, "quality": { "reasoner": "ELK", "robotVersion": "ROBOT version 1.9.7", "consistent": null, "reasonError": "INVALID ONTOLOGY FILE ERROR Could not load a valid ontology from file: hba.owl\nFor details see: http://robot.obolibrary.org/errors#invalid-ontology-file-error\nUse the -vvv option to show the stack trace.\nUse the --help option to see usage information.\n", "checkedAt": "2026-10-25T19:06:37.454Z", "sha256": "d489a26852aff37789f730943976abde92b4bffd89635096275459cefe91019b", "source": "data/quality/hba.json" }, "oops": { "error": "fetch failed", "checkedAt": "2026-10-25T19:06:47.610Z", "source": "data/quality/hba.json" }, "releases": { "dates": [ "2024-07-12", "2025-02-10" ], "lastYear": 0, "from": "GitHub releases" }, "bioregistry": null, "artifact": { "source": "https://github.com/brain-bican/purl.brain-bican.org/", "etag": "W/\"250d95f0926c552452837cb36dca268f\"", "contentType": "text/html", "fetchedAt": "2026-10-25T19:10:17.624Z" }, "score": 24, "gross": 27, "earned": 27, "possible": 100, "qualityApplies": true, "penalty": { "score": -3, "reason": "1.7 years → 4 × max(0, 1.7 − 1)", "steps": [ { "label": "Time since last activity", "pts": -3, "detail": "1.7 years → 4 × max(0, 1.7 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 23, "breakdown": { "findable": { "score": 4, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 4, "max": 4, "detail": "purl.brain-bican.org" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Indexed in services (F4): not indexed anywhere", "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "download HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL, OBO" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL, OBO" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 2, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 2, "max": 4, "detail": "v2025-02-10 (latest GitHub release); not declared inside the artefact" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): v2025-02-10 (latest GitHub release); not declared inside the artefact", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 0, "max": 4, "detail": "no BFO/COB/DOLCE import found" }, { "label": "Standard relations (RO)", "pts": 0, "max": 2, "detail": "does not import the Relation Ontology" }, { "label": "Logical consistency", "pts": 0, "max": 6, "detail": "never checked by a reasoner" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "ROBOT report: warning density", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "Scaled 0/16 → 20", "pts": 0, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "Upper-ontology alignment: no BFO/COB/DOLCE import found", "Standard relations (RO): does not import the Relation Ontology", "Logical consistency: never checked by a reasoner", "ROBOT report: no errors: no ROBOT report available", "ROBOT report: warning density: no ROBOT report available", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 2, "max": 16, "steps": [ { "label": "Recency", "pts": 2, "max": 10, "detail": "2025-02-10 → 20.4 months (≤ 2 years)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases (GitHub releases)" } ], "notes": [ "Recency: 2025-02-10 → 20.4 months (≤ 2 years)", "Release cadence (12 months): 0 releases (GitHub releases)" ] }, "adoption": { "score": 2, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "1 project" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 0, "max": 5, "detail": "max(stars 1 → 0, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 1 project", "Reused by other ontologies: 0", "Community signal: max(stars 1 → 0, citations 0 → 0)" ] } }, "lastActivity": "2025-02-10T23:22:34Z", "adopterCount": 1, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": { "label": "v2025-02-10", "from": "latest GitHub release", "value": "https://github.com/brain-bican/human_brain_atlas_ontology/releases/tag/v2025-02-10", "all": [ { "label": "v2025-02-10", "from": "latest GitHub release", "value": "https://github.com/brain-bican/human_brain_atlas_ontology/releases/tag/v2025-02-10" }, { "label": "v2025-02-10 + commit 3ff2721", "from": "latest release tag; main evaluated at commit", "value": "3ff272135c917b0437edc4cab7d23bd25f05244b", "release": "v2025-02-10" }, { "label": "commit 3ff2721", "from": "main at evaluation time", "value": "3ff272135c917b0437edc4cab7d23bd25f05244b" } ] }, "evaluatedAt": "2026-10-25T19:10:18.023Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "Allen Human Brain Atlas", "url": "https://human.brain-map.org/", "note": "Source region hierarchy", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 48, "grade": "D", "fair": null, "version": null, "terms": null, "stars": 1, "license": null, "lastActivity": "2025-02-10T23:22:34Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 50, "grade": "C", "fair": 35, "version": "commit 3ff2721", "terms": null, "stars": 1, "license": null, "lastActivity": "2025-02-10T23:22:34Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 52, "grade": "C", "fair": 40, "version": "v2025-02-10", "terms": null, "stars": 1, "license": null, "lastActivity": "2025-02-10T23:22:34Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 24, "grade": "D", "fair": 23, "version": "v2025-02-10 + commit 3ff2721", "terms": null, "stars": 1, "license": null, "lastActivity": "2025-02-10T23:22:34Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 24, "grade": "E", "fair": 23, "version": "v2025-02-10", "terms": null, "stars": 1, "license": null, "lastActivity": "2025-02-10T23:22:34Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 17, "grade": "E", "fair": 16, "version": "v2025-02-10 + commit 3ff2721", "terms": null, "stars": 1, "license": null, "lastActivity": "2025-02-10T23:22:34Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 24 → 17 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Evaluated version: v2025-02-10 → v2025-02-10 + commit 3ff2721" }, { "at": "2026-10-25T19:10:30.278Z", "runId": "2026-10-25T19-10-16Z", "what": "Evaluated version: v2025-02-10 + commit 3ff2721 → v2025-02-10" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 52 → 24 (grade C → D) · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Evaluated version: v2025-02-10 → v2025-02-10 + commit 3ff2721" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 50 → 52 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Evaluated version: commit 3ff2721 → v2025-02-10" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Download link: — → ok" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 48 → 50 (grade D → C) · rubric v1.0 → v2.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Evaluated version: — → commit 3ff2721" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/hba/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://purl.brain-bican.org/ontology/hbao/hbao.owl", "neuroschema:evaluatedVersion": "https://github.com/brain-bican/human_brain_atlas_ontology/releases/tag/v2025-02-10" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://human.brain-map.org/", "prov:atTime": "2026-10-25T19:10:17.202Z" }, { "@id": "https://github.com/brain-bican/human_brain_atlas_ontology", "prov:atTime": "2026-10-25T19:10:17.599Z" }, { "@id": "https://purl.brain-bican.org/ontology/hbao/hbao.owl", "prov:atTime": "2026-10-25T19:10:17.674Z" }, { "@id": "https://github.com/brain-bican/purl.brain-bican.org/", "prov:atTime": "2026-10-25T19:10:17.624Z" }, { "@id": "https://github.com/brain-bican/human_brain_atlas_ontology.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:17.287Z" }, { "@id": "https://api.github.com/repos/brain-bican/human_brain_atlas_ontology", "prov:atTime": "2026-10-25T19:10:17.718Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:18.023Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#hba" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#hba" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#hba" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#hba" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#hba" } ] } }, { "id": "dhba", "acronym": "DHBA", "name": "Developing Human Brain Atlas Ontology", "category": "anatomy", "kind": "ontology", "description": "Brain region hierarchy of the developing human brain, as used by BrainSpan and the Allen developing human atlases.", "formats": [ "OWL", "OBO" ], "species": [ "Human" ], "maintainer": "Allen Institute / BICAN", "homepage": "https://www.brainspan.org/", "repository": "https://github.com/brain-bican/developing_human_brain_atlas_ontology", "publications": [], "usedBy": [ { "name": "BrainSpan", "url": "https://www.brainspan.org/", "note": "Region annotation of developmental transcriptome data" } ], "tags": [ "Allen", "BICAN", "brain regions", "development", "human" ], "download": "https://purl.brain-bican.org/ontology/dhbao/dhbao.owl", "url": "https://neuroschema.org/o/dhba/", "evaluation": { "links": { "homepage": { "url": "https://www.brainspan.org/", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:17.520Z" }, "repository": { "url": "https://github.com/brain-bican/developing_human_brain_atlas_ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:17.703Z" }, "download": { "url": "https://purl.brain-bican.org/ontology/dhbao/dhbao.owl", "code": 200, "state": "ok", "resolvedUrl": "https://github.com/brain-bican/purl.brain-bican.org/", "checkedAt": "2026-10-25T19:10:18.052Z" } }, "github": { "slug": "brain-bican/developing_human_brain_atlas_ontology", "stars": 2, "forks": 0, "openIssues": 4, "pushedAt": "2025-11-13T07:07:40Z", "archived": false, "license": null, "latestRelease": { "tag": "v2025-02-10", "date": "2025-02-10T14:56:11Z", "url": "https://github.com/brain-bican/developing_human_brain_atlas_ontology/releases/tag/v2025-02-10" }, "source": "https://api.github.com/repos/brain-bican/developing_human_brain_atlas_ontology", "fetchedAt": "2026-10-25T19:10:17.768Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [], "git": { "commit": "5039f6900b4ca96bc20824769cb717ec3e3b1a9c", "ref": "main", "headTag": null, "latestTag": { "name": "v2025-02-10", "commit": "fd9ba78a7cadaa20c1579b07ebc68af9b2e2c859", "url": "https://github.com/brain-bican/developing_human_brain_atlas_ontology/releases/tag/v2025-02-10" }, "tagCount": 1, "tagDates": [ "2025-02-10" ], "url": "https://github.com/brain-bican/developing_human_brain_atlas_ontology/tree/5039f6900b4ca96bc20824769cb717ec3e3b1a9c", "source": "https://github.com/brain-bican/developing_human_brain_atlas_ontology.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:17.421Z" }, "tib": null, "dashboard": null, "quality": { "reasoner": "ELK", "robotVersion": "ROBOT version 1.9.7", "consistent": null, "reasonError": "INVALID ONTOLOGY FILE ERROR Could not load a valid ontology from file: dhba.owl\nFor details see: http://robot.obolibrary.org/errors#invalid-ontology-file-error\nUse the -vvv option to show the stack trace.\nUse the --help option to see usage information.\n", "checkedAt": "2026-10-25T19:06:50.174Z", "sha256": "a23c578523f34ab2376494cc5efe206df069cd9d3a3f5b0aa86cabb319112dcb", "source": "data/quality/dhba.json" }, "oops": { "error": "fetch failed", "checkedAt": "2026-10-25T19:07:00.600Z", "source": "data/quality/dhba.json" }, "releases": { "dates": [ "2025-02-10" ], "lastYear": 0, "from": "GitHub releases" }, "bioregistry": null, "artifact": { "source": "https://github.com/brain-bican/purl.brain-bican.org/", "etag": "W/\"250d95f0926c552452837cb36dca268f\"", "contentType": "text/html", "fetchedAt": "2026-10-25T19:10:17.734Z" }, "score": 30, "gross": 30, "earned": 30, "possible": 100, "qualityApplies": true, "penalty": { "score": 0, "reason": "active (last activity 2025-11-13)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.9 years → 4 × max(0, 0.9 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 23, "breakdown": { "findable": { "score": 4, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 4, "max": 4, "detail": "purl.brain-bican.org" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Indexed in services (F4): not indexed anywhere", "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "download HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL, OBO" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL, OBO" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 2, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 2, "max": 4, "detail": "v2025-02-10 (latest GitHub release); not declared inside the artefact" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): v2025-02-10 (latest GitHub release); not declared inside the artefact", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 0, "max": 4, "detail": "no BFO/COB/DOLCE import found" }, { "label": "Standard relations (RO)", "pts": 0, "max": 2, "detail": "does not import the Relation Ontology" }, { "label": "Logical consistency", "pts": 0, "max": 6, "detail": "never checked by a reasoner" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "ROBOT report: warning density", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "Scaled 0/16 → 20", "pts": 0, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "Upper-ontology alignment: no BFO/COB/DOLCE import found", "Standard relations (RO): does not import the Relation Ontology", "Logical consistency: never checked by a reasoner", "ROBOT report: no errors: no ROBOT report available", "ROBOT report: warning density: no ROBOT report available", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 5, "max": 16, "steps": [ { "label": "Recency", "pts": 5, "max": 10, "detail": "2025-11-13 → 11.4 months (≤ 1 year)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases (GitHub releases)" } ], "notes": [ "Recency: 2025-11-13 → 11.4 months (≤ 1 year)", "Release cadence (12 months): 0 releases (GitHub releases)" ] }, "adoption": { "score": 2, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "1 project" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 0, "max": 5, "detail": "max(stars 2 → 0, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 1 project", "Reused by other ontologies: 0", "Community signal: max(stars 2 → 0, citations 0 → 0)" ] } }, "lastActivity": "2025-11-13T07:07:40Z", "adopterCount": 1, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": { "label": "v2025-02-10", "from": "latest GitHub release", "value": "https://github.com/brain-bican/developing_human_brain_atlas_ontology/releases/tag/v2025-02-10", "all": [ { "label": "v2025-02-10", "from": "latest GitHub release", "value": "https://github.com/brain-bican/developing_human_brain_atlas_ontology/releases/tag/v2025-02-10" }, { "label": "v2025-02-10 + commit 5039f69", "from": "latest release tag; main evaluated at commit", "value": "5039f6900b4ca96bc20824769cb717ec3e3b1a9c", "release": "v2025-02-10" }, { "label": "commit 5039f69", "from": "main at evaluation time", "value": "5039f6900b4ca96bc20824769cb717ec3e3b1a9c" } ] }, "evaluatedAt": "2026-10-25T19:10:18.299Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "BrainSpan", "url": "https://www.brainspan.org/", "note": "Region annotation of developmental transcriptome data", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 56, "grade": "C", "fair": null, "version": null, "terms": null, "stars": 2, "license": null, "lastActivity": "2025-11-13T07:07:40Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 56, "grade": "C", "fair": 35, "version": "commit 5039f69", "terms": null, "stars": 2, "license": null, "lastActivity": "2025-11-13T07:07:40Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 61, "grade": "C", "fair": 40, "version": "v2025-02-10", "terms": null, "stars": 2, "license": null, "lastActivity": "2025-11-13T07:07:40Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 30, "grade": "D", "fair": 23, "version": "v2025-02-10 + commit 5039f69", "terms": null, "stars": 2, "license": null, "lastActivity": "2025-11-13T07:07:40Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 30, "grade": "E", "fair": 23, "version": "v2025-02-10", "terms": null, "stars": 2, "license": null, "lastActivity": "2025-11-13T07:07:40Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 23, "grade": "E", "fair": 16, "version": "v2025-02-10 + commit 5039f69", "terms": null, "stars": 2, "license": null, "lastActivity": "2025-11-13T07:07:40Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 30 → 23 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Evaluated version: v2025-02-10 → v2025-02-10 + commit 5039f69" }, { "at": "2026-10-25T19:10:30.278Z", "runId": "2026-10-25T19-10-16Z", "what": "Evaluated version: v2025-02-10 + commit 5039f69 → v2025-02-10" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 61 → 30 (grade C → D) · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Evaluated version: v2025-02-10 → v2025-02-10 + commit 5039f69" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 56 → 61 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Evaluated version: commit 5039f69 → v2025-02-10" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Download link: — → ok" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Evaluated version: — → commit 5039f69" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/dhba/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://purl.brain-bican.org/ontology/dhbao/dhbao.owl", "neuroschema:evaluatedVersion": "https://github.com/brain-bican/developing_human_brain_atlas_ontology/releases/tag/v2025-02-10" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://www.brainspan.org/", "prov:atTime": "2026-10-25T19:10:17.520Z" }, { "@id": "https://github.com/brain-bican/developing_human_brain_atlas_ontology", "prov:atTime": "2026-10-25T19:10:17.703Z" }, { "@id": "https://purl.brain-bican.org/ontology/dhbao/dhbao.owl", "prov:atTime": "2026-10-25T19:10:18.052Z" }, { "@id": "https://github.com/brain-bican/purl.brain-bican.org/", "prov:atTime": "2026-10-25T19:10:17.734Z" }, { "@id": "https://github.com/brain-bican/developing_human_brain_atlas_ontology.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:17.421Z" }, { "@id": "https://api.github.com/repos/brain-bican/developing_human_brain_atlas_ontology", "prov:atTime": "2026-10-25T19:10:17.768Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:18.299Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#dhba" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#dhba" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#dhba" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#dhba" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#dhba" } ] } }, { "id": "neuronames", "acronym": "NeuroNames", "name": "NeuroNames", "category": "anatomy", "kind": "vocabulary", "description": "A long-standing nomenclature of primate brain structures with synonyms across languages and atlases, served through BrainInfo.", "formats": [ "Web", "Spreadsheet" ], "species": [ "Human", "Macaque", "Rat", "Mouse" ], "maintainer": "BrainInfo, University of Washington", "homepage": "http://braininfo.rprc.washington.edu/", "publications": [ { "title": "NeuroNames: an ontology for the BrainInfo portal to neuroscience on the web", "doi": "10.1007/s12021-011-9128-8", "year": 2012 } ], "usedBy": [ { "name": "BrainInfo", "url": "http://braininfo.rprc.washington.edu/", "note": "Primary nomenclature" } ], "tags": [ "brain regions", "nomenclature", "primate" ], "url": "https://neuroschema.org/o/neuronames/", "evaluation": { "links": { "homepage": { "url": "http://braininfo.rprc.washington.edu/", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:20.358Z" }, "repository": null, "download": null }, "github": null, "ols": null, "obo": null, "bioportal": null, "citations": [ { "doi": "10.1007/s12021-011-9128-8", "count": 55, "source": "https://api.crossref.org/works/10.1007%2Fs12021-011-9128-8", "fetchedAt": "2026-10-25T19:10:18.092Z" } ], "git": null, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [], "lastYear": 0, "from": null }, "bioregistry": null, "artifact": null, "score": 8, "gross": 13, "earned": 10, "possible": 80, "qualityApplies": false, "penalty": { "score": -5, "reason": "no commits, releases or dated files found", "steps": [ { "label": "No activity evidence", "pts": -5, "detail": "no commits, releases or dated files found" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 6, "breakdown": { "findable": { "score": 3, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 3, "max": 3, "detail": "doi:10.1007/s12021-011-9128-8" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere" ] }, "accessible": { "score": 3, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 0, "max": 6, "detail": "no download or repository listed" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Artefact retrievable over HTTP(S) (A1): no download or repository listed", "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 0, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 0, "max": 5, "detail": "none of: Web, Spreadsheet" }, { "label": "Semantic-web IRIs (I2)", "pts": 0, "max": 3, "detail": "no RDF/OWL/JSON-LD representation" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "Formal machine-readable format (I1): none of: Web, Spreadsheet", "Semantic-web IRIs (I2): no RDF/OWL/JSON-LD representation", "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 0, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 0, "max": 4, "detail": "no version in artefact, registry or release tags" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): no version in artefact, registry or release tags", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Not applicable", "pts": 0, "max": 0, "detail": "vocabulary without an OWL/OBO/RDF artefact; total scaled from 80 to 100" } ], "notes": [], "applicable": false }, "maintenance": { "score": 0, "max": 16, "steps": [ { "label": "Recency", "pts": 0, "max": 10, "detail": "no activity evidence" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases" } ], "notes": [ "Recency: no activity evidence", "Release cadence (12 months): 0 releases" ] }, "adoption": { "score": 4, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "1 project" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 2, "max": 5, "detail": "max(stars 0 → 0, citations 55 → 2)" } ], "notes": [ "Documented adopting projects: 1 project", "Reused by other ontologies: 0", "Community signal: max(stars 0 → 0, citations 55 → 2)" ] } }, "lastActivity": null, "adopterCount": 1, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": null, "evaluatedAt": "2026-10-25T19:10:20.358Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "BrainInfo", "url": "http://braininfo.rprc.washington.edu/", "note": "Primary nomenclature", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 17, "grade": "D", "fair": null, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 18, "grade": "D", "fair": 10, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 13, "grade": "D", "fair": 10, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 8, "grade": "D", "fair": 6, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 8, "grade": "E", "fair": 6, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 8, "grade": "E", "fair": 6, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 13 → 8 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 18 → 13 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 17 → 18 · rubric v1.0 → v2.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/neuronames/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "http://braininfo.rprc.washington.edu/", "neuroschema:evaluatedVersion": null }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "http://braininfo.rprc.washington.edu/", "prov:atTime": "2026-10-25T19:10:20.358Z" }, { "@id": "https://api.crossref.org/works/10.1007%2Fs12021-011-9128-8", "prov:atTime": "2026-10-25T19:10:18.092Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:20.358Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#neuronames" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#neuronames" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#neuronames" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#neuronames" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#neuronames" } ] } }, { "id": "zfa", "acronym": "ZFA", "name": "Zebrafish Anatomy Ontology", "category": "anatomy", "kind": "ontology", "description": "Anatomy and development of the zebrafish, including the larval and adult nervous system.", "formats": [ "OWL", "OBO" ], "species": [ "Zebrafish" ], "maintainer": "ZFIN", "license": "CC BY 3.0", "homepage": "https://zfin.org/", "repository": "https://github.com/ZFIN/zebrafish-anatomical-ontology", "download": "http://purl.obolibrary.org/obo/zfa.owl", "ols": "zfa", "obo": "zfa", "publications": [], "usedBy": [ { "name": "ZFIN", "url": "https://zfin.org/", "note": "Expression and phenotype annotation" } ], "tags": [ "anatomy", "zebrafish", "OBO Foundry" ], "url": "https://neuroschema.org/o/zfa/", "evaluation": { "links": { "homepage": { "url": "https://zfin.org/", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:18.885Z" }, "repository": { "url": "https://github.com/ZFIN/zebrafish-anatomical-ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:18.545Z" }, "download": { "url": "http://purl.obolibrary.org/obo/zfa.owl", "code": 200, "state": "ok", "resolvedUrl": "https://raw.githubusercontent.com/ZFIN/zebrafish-anatomical-ontology/master/zfa.owl", "checkedAt": "2026-10-25T19:10:19.016Z" } }, "github": { "slug": "ZFIN/zebrafish-anatomical-ontology", "stars": 8, "forks": 7, "openIssues": 48, "pushedAt": "2026-09-23T20:36:19Z", "archived": false, "license": null, "latestRelease": { "tag": "v2026-07-16", "date": "2026-07-16T22:13:27Z", "url": "https://github.com/ZFIN/zebrafish-anatomical-ontology/releases/tag/v2026-07-16" }, "source": "https://api.github.com/repos/ZFIN/zebrafish-anatomical-ontology", "fetchedAt": "2026-10-25T19:10:18.668Z" }, "ols": { "portal": "OLS (EMBL-EBI)", "id": "zfa", "api": "v2", "title": "Zebrafish anatomy and development ontology", "iri": "http://purl.obolibrary.org/obo/zfa.owl", "versionIri": "http://purl.obolibrary.org/obo/zfa/releases/2026-07-16/zfa.owl", "version": "2026-07-16", "releaseDate": "2026-07-16", "terms": 3293, "properties": 44, "individuals": 0, "importsFrom": [ "dcterms", "iao", "oio", "omo", "owl", "rdfs", "ro", "zfs" ], "exportsTo": [ "aeo", "efo", "pride", "zfs", "zp" ], "languages": [ "en" ], "loaded": "2026-10-25T00:12:59.060892994", "sourceFileTimestamp": "Sun Oct 25 00:12:56 UTC 2026", "obsolete": false, "status": "LOADED", "page": "https://www.ebi.ac.uk/ols4/ontologies/zfa", "source": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/zfa", "fetchedAt": "2026-10-25T19:10:19.136Z" }, "obo": { "id": "zfa", "status": "active", "domain": "anatomy and development", "license": "CC BY 3.0", "usages": [ { "user": "http://zfin.org", "type": null, "description": "ZFIN uses ZFA to annotate gene expression and phenotype" } ], "source": "https://obofoundry.org/registry/ontologies.jsonld", "fetchedAt": "2026-10-25T19:10:17.692Z" }, "bioportal": null, "citations": [], "git": { "commit": "06ad6e8af56659d8fdefb532d8b4e84d69f63168", "ref": "master", "headTag": null, "latestTag": { "name": "v2026-07-16", "commit": "67ced4ed009bcb4f803caeb615a4de346cffdfac", "url": "https://github.com/ZFIN/zebrafish-anatomical-ontology/releases/tag/v2026-07-16" }, "tagCount": 12, "tagDates": [ "2021-12-09", "2022-02-15", "2022-02-28", "2022-03-15", "2022-12-09", "2025-01-28", "2025-09-05", "2026-03-25", "2026-03-30", "2026-03-31", "2026-06-02", "2026-07-16" ], "url": "https://github.com/ZFIN/zebrafish-anatomical-ontology/tree/06ad6e8af56659d8fdefb532d8b4e84d69f63168", "source": "https://github.com/ZFIN/zebrafish-anatomical-ontology.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:18.217Z" }, "tib": null, "dashboard": { "ns": "zfa", "checks": { "FP01 Open": "PASS", "FP02 Common Format": "PASS", "FP03 URIs": "PASS", "FP04 Versioning": "PASS", "FP05 Scope": "PASS", "FP06 Textual Definitions": "WARN", "FP07 Relations": "PASS", "FP08 Documented": "PASS", "FP09 Plurality of Users": "PASS", "FP11 Locus of Authority": "PASS", "FP12 Naming Conventions": "PASS", "FP16 Maintenance": "PASS", "FP20 Responsiveness": "PASS", "ROBOT Report": "WARN" }, "robot": { "ERROR": 0, "INFO": 1, "WARN": 471 }, "consistent": true, "unsatisfiable": 0, "classes": 3277, "axioms": 31943, "owl2dl": true, "reusedPct": 2.17, "usedBy": [ "zp" ], "oboScore": 0.48, "summary": "WARN", "checkedVersion": "http://purl.obolibrary.org/obo/zfa/releases/2026-07-16/zfa-base.owl", "checkedAt": "2026-07-18T13:45:22.700Z", "page": "https://dashboard.obofoundry.org/dashboard/zfa/dashboard.html", "source": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "fetchedAt": "2026-10-25T19:10:20.368Z" }, "quality": null, "oops": { "error": "fetch failed", "checkedAt": "2026-10-25T19:07:11.092Z", "source": "data/quality/zfa.json" }, "releases": { "dates": [ "2021-12-09", "2022-02-15", "2022-02-28", "2022-03-15", "2022-12-09", "2025-01-28", "2025-09-05", "2026-03-25", "2026-03-31", "2026-06-02", "2026-07-16" ], "lastYear": 4, "from": "GitHub releases" }, "bioregistry": { "prefix": "zfa", "name": "Zebrafish anatomy and development ontology", "mappings": { "aberowl": "ZFA", "biocontext": "ZFA", "bioportal": "ZFA", "fairsharing": "FAIRsharing.s3r6sk", "go.resource": "ZFA", "obofoundry": "zfa", "ols": "zfa", "ontobee": "ZFA", "prefixcommons": "zfa", "wikidata.entity": "Q81661530" }, "dependsOn": [], "appearsIn": [ "zp" ], "license": "CC-BY-3.0", "version": "2026-07-16", "deprecated": false, "page": "https://bioregistry.io/zfa", "source": "https://bioregistry.io/api/registry/zfa", "fetchedAt": "2026-10-25T19:10:18.125Z" }, "artifact": { "source": "https://raw.githubusercontent.com/ZFIN/zebrafish-anatomical-ontology/master/zfa.owl", "versionIri": "http://purl.obolibrary.org/obo/zfa/releases/2026-07-16/zfa.owl", "versionInfo": "2026-07-16", "etag": "\"6a1ca9736a4eb9ead44c230ccd2c2efc80d84b19b437db090a7fdadf45bd6aea\"", "contentType": "text/plain", "fetchedAt": "2026-10-25T19:10:19.326Z" }, "score": 79, "gross": 79, "earned": 79, "possible": 100, "qualityApplies": true, "penalty": { "score": 0, "reason": "active (last activity 2026-09-23)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.1 years → 4 × max(0, 0.1 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "B", "fair": 45, "breakdown": { "findable": { "score": 9, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 4, "max": 4, "detail": "purl.obolibrary.org" }, { "label": "Indexed in services (F4)", "pts": 5, "max": 5, "detail": "5: OLS, BioPortal, OBO Foundry, Bioregistry, FAIRsharing" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 12, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "download HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 3, "max": 3, "detail": "OBO Foundry, Bioregistry" } ], "notes": [] }, "interoperable": { "score": 12, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL, OBO" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL, OBO" }, { "label": "References other vocabularies (I3)", "pts": 4, "max": 4, "detail": "imports 4: iao, omo, ro, zfs" } ], "notes": [] }, "reusable": { "score": 12, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "CC BY 3.0" }, { "label": "Release provenance (R1.2)", "pts": 4, "max": 4, "detail": "2026-07-16 (version IRI in the artefact)" }, { "label": "Community standards (R1.3)", "pts": 3, "max": 3, "detail": "OBO principles: 12/13 checks pass" } ], "notes": [] }, "quality": { "score": 14, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 0, "max": 4, "detail": "no BFO/COB/DOLCE import found" }, { "label": "Standard relations (RO)", "pts": 2, "max": 2, "detail": "imports RO" }, { "label": "Logical consistency", "pts": 6, "max": 6, "detail": "consistent, 0 unsatisfiable classes (OBO Dashboard)" }, { "label": "ROBOT report: no errors", "pts": 2, "max": 2, "detail": "0 errors" }, { "label": "ROBOT report: warning density", "pts": 1, "max": 2, "detail": "471 warnings / 3277 classes = 0.14" }, { "label": "Scaled 11/16 → 20", "pts": 3, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "Upper-ontology alignment: no BFO/COB/DOLCE import found", "ROBOT report: warning density: 471 warnings / 3277 classes = 0.14", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 15, "max": 16, "steps": [ { "label": "Recency", "pts": 10, "max": 10, "detail": "2026-09-23 → 1.0 months (≤ 3 months)" }, { "label": "Release cadence (12 months)", "pts": 5, "max": 6, "detail": "4 releases (GitHub releases)" } ], "notes": [ "Release cadence (12 months): 4 releases (GitHub releases)" ] }, "adoption": { "score": 5, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "1 project" }, { "label": "Reused by other ontologies", "pts": 2, "max": 4, "detail": "5: zp, aeo, efo, pride, zfs" }, { "label": "Community signal", "pts": 1, "max": 5, "detail": "max(stars 8 → 1, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 1 project", "Reused by other ontologies: 5: zp, aeo, efo, pride, zfs", "Community signal: max(stars 8 → 1, citations 0 → 0)" ] } }, "lastActivity": "2026-09-23T20:36:19Z", "adopterCount": 1, "reuseCount": 5, "importCount": 4, "registries": [ "OLS", "BioPortal", "OBO Foundry", "Bioregistry", "FAIRsharing" ], "evaluatedVersion": { "label": "2026-07-16", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/zfa/releases/2026-07-16/zfa.owl", "inArtefact": true, "all": [ { "label": "2026-07-16", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/zfa/releases/2026-07-16/zfa.owl", "inArtefact": true }, { "label": "2026-07-16", "from": "version info in the artefact", "value": "2026-07-16", "inArtefact": true }, { "label": "2026-07-16", "from": "OLS", "value": "http://purl.obolibrary.org/obo/zfa/releases/2026-07-16/zfa.owl" }, { "label": "v2026-07-16", "from": "latest GitHub release", "value": "https://github.com/ZFIN/zebrafish-anatomical-ontology/releases/tag/v2026-07-16" }, { "label": "v2026-07-16 + commit 06ad6e8", "from": "latest release tag; master evaluated at commit", "value": "06ad6e8af56659d8fdefb532d8b4e84d69f63168", "release": "v2026-07-16" }, { "label": "commit 06ad6e8", "from": "master at evaluation time", "value": "06ad6e8af56659d8fdefb532d8b4e84d69f63168" } ] }, "evaluatedAt": "2026-10-25T19:10:20.638Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "ZFIN", "url": "https://zfin.org/", "note": "Expression and phenotype annotation", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 81, "grade": "A", "fair": null, "version": "2026-07-16", "terms": 3293, "stars": 8, "license": "CC BY 3.0", "lastActivity": "2026-09-23T20:36:19Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 80, "grade": "A", "fair": 55, "version": "2026-07-16", "terms": 3293, "stars": 8, "license": "CC BY 3.0", "lastActivity": "2026-09-23T20:36:19Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 80, "grade": "A", "fair": 55, "version": "2026-07-16", "terms": 3293, "stars": 8, "license": "CC BY 3.0", "lastActivity": "2026-09-23T20:36:19Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 79, "grade": "B", "fair": 45, "version": "2026-07-16", "terms": 3293, "stars": 8, "license": "CC BY 3.0", "lastActivity": "2026-09-23T20:36:19Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 79, "grade": "B", "fair": 45, "version": "2026-07-16", "terms": 3293, "stars": 8, "license": "CC BY 3.0", "lastActivity": "2026-09-23T20:36:19Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 81, "grade": "B", "fair": 45, "version": "2026-07-16", "terms": 3293, "stars": 8, "license": "CC BY 3.0", "lastActivity": "2026-09-23T20:36:19Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 79 → 81 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 80 → 79 (grade A → B) · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 81 → 80 · rubric v1.0 → v2.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/zfa/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "http://purl.obolibrary.org/obo/zfa.owl", "neuroschema:evaluatedVersion": "http://purl.obolibrary.org/obo/zfa/releases/2026-07-16/zfa.owl" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://zfin.org/", "prov:atTime": "2026-10-25T19:10:18.885Z" }, { "@id": "https://github.com/ZFIN/zebrafish-anatomical-ontology", "prov:atTime": "2026-10-25T19:10:18.545Z" }, { "@id": "http://purl.obolibrary.org/obo/zfa.owl", "prov:atTime": "2026-10-25T19:10:19.016Z" }, { "@id": "https://raw.githubusercontent.com/ZFIN/zebrafish-anatomical-ontology/master/zfa.owl", "prov:atTime": "2026-10-25T19:10:19.326Z" }, { "@id": "https://github.com/ZFIN/zebrafish-anatomical-ontology.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:18.217Z" }, { "@id": "https://api.github.com/repos/ZFIN/zebrafish-anatomical-ontology", "prov:atTime": "2026-10-25T19:10:18.668Z" }, { "@id": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/zfa", "prov:atTime": "2026-10-25T19:10:19.136Z" }, { "@id": "https://obofoundry.org/registry/ontologies.jsonld", "prov:atTime": "2026-10-25T19:10:17.692Z" }, { "@id": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "prov:atTime": "2026-10-25T19:10:20.368Z" }, { "@id": "https://bioregistry.io/api/registry/zfa", "prov:atTime": "2026-10-25T19:10:18.125Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:20.638Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#zfa" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#zfa" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#zfa" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#zfa" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#zfa" } ] } }, { "id": "fbbt", "acronym": "FBbt", "name": "Drosophila Anatomy Ontology", "category": "anatomy", "kind": "ontology", "description": "Anatomy of Drosophila melanogaster, including thousands of named neuron types linked to connectome datasets.", "formats": [ "OWL", "OBO" ], "species": [ "Fruit fly" ], "maintainer": "FlyBase / Virtual Fly Brain", "license": "CC BY 4.0", "homepage": "https://www.virtualflybrain.org/", "repository": "https://github.com/FlyBase/drosophila-anatomy-developmental-ontology", "download": "http://purl.obolibrary.org/obo/fbbt.owl", "ols": "fbbt", "obo": "fbbt", "publications": [ { "title": "The Drosophila anatomy ontology", "doi": "10.1186/2041-1480-4-32", "year": 2013 } ], "usedBy": [ { "name": "FlyBase", "url": "https://flybase.org/", "note": "Expression and phenotype annotation" }, { "name": "Virtual Fly Brain", "url": "https://www.virtualflybrain.org/", "note": "Neuron types and connectome integration" } ], "tags": [ "anatomy", "neuron types", "drosophila", "connectomics", "OBO Foundry" ], "url": "https://neuroschema.org/o/fbbt/", "evaluation": { "links": { "homepage": { "url": "https://www.virtualflybrain.org/", "code": 200, "state": "ok", "lastModified": "2026-10-16T06:09:58.000Z", "checkedAt": "2026-10-25T19:10:19.486Z" }, "repository": { "url": "https://github.com/FlyBase/drosophila-anatomy-developmental-ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:18.899Z" }, "download": { "url": "http://purl.obolibrary.org/obo/fbbt.owl", "code": 200, "state": "ok", "resolvedUrl": "https://release-assets.githubusercontent.com/github-production-release-asset/37205250/ca45cdfa-1b26-465c-bf57-07e086ac9c5d?sp=r&sv=2018-11-09&sr=b&spr=https&se=2026-10-25T19%3A59%3A07Z&rscd=attachment%3B+filename%3Dfbbt.owl&rsct=application%2Foctet-stream&skoid=96c2d410-5711-43a1-aedd-ab1947aa7ab0&sktid=398a6654-997b-47e9-b12b-9515b896b4de&skt=2026-10-25T18%3A58%3A56Z&ske=2026-10-25T19%3A59%3A07Z&sks=b&skv=2018-11-09&sig=lyNAM8VoWwYYyN6QbC8pzWyak%2BU8PG4195yvdyKIjlg%3D&jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmVsZWFzZS1hc3NldHMuZ2l0aHVidXNlcmNvbnRlbnQuY29tIiwia2V5Ijoia2V5MSIsImV4cCI6MTc5Mjk1OTAxOCwibmJmIjoxNzkyOTU1NDE4LCJwYXRoIjoicmVsZWFzZWFzc2V0cHJvZHVjdGlvbi5ibG9iLmNvcmUud2luZG93cy5uZXQifQ.nvxIZnwtLAHi6DJc_TiYYux4k621PAmLHwIJrCnpGMM&response-content-disposition=attachment%3B%20filename%3Dfbbt.owl&response-content-type=application%2Foctet-stream", "lastModified": "2026-10-01T12:00:52.000Z", "checkedAt": "2026-10-25T19:10:19.631Z" } }, "github": { "slug": "FlyBase/drosophila-anatomy-developmental-ontology", "stars": 23, "forks": 5, "openIssues": 15, "pushedAt": "2026-10-20T14:48:38Z", "archived": false, "license": "CC-BY-4.0", "latestRelease": { "tag": "v2026-10-01", "date": "2026-10-01T12:17:53Z", "url": "https://github.com/FlyBase/drosophila-anatomy-developmental-ontology/releases/tag/v2026-10-01" }, "source": "https://api.github.com/repos/FlyBase/drosophila-anatomy-developmental-ontology", "fetchedAt": "2026-10-25T19:10:18.826Z" }, "ols": { "portal": "OLS (EMBL-EBI)", "id": "fbbt", "api": "v2", "title": "Drosophila gross anatomy", "iri": "http://purl.obolibrary.org/obo/fbbt.owl", "versionIri": "http://purl.obolibrary.org/obo/fbbt/releases/2026-10-01/fbbt.owl", "version": "2026-10-01", "releaseDate": "2026-10-01", "terms": 29776, "properties": 259, "individuals": 0, "importsFrom": [ "bfo", "caro", "cl", "cob", "dcterms", "go", "iao", "ncbitaxon", "oio", "omo", "owl", "pato", "rdfs", "ro", "so" ], "exportsTo": [ "aeo", "dpo", "efo", "pride" ], "languages": [ "en" ], "loaded": "2026-10-25T00:08:48.752525975", "sourceFileTimestamp": "Sun Oct 25 00:08:41 UTC 2026", "obsolete": false, "status": "LOADED", "page": "https://www.ebi.ac.uk/ols4/ontologies/fbbt", "source": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/fbbt", "fetchedAt": "2026-10-25T19:10:19.843Z" }, "obo": { "id": "fbbt", "status": "active", "domain": "anatomy and development", "license": "CC BY 4.0", "usages": [ { "user": "http://www.virtualflybrain.org/", "type": null, "description": "VFB uses FBbt to annotate brain images" }, { "user": "http://flybase.org", "type": null, "description": "Flybase uses FBbt for expression and phenotype data annotation in Drosophila" } ], "source": "https://obofoundry.org/registry/ontologies.jsonld", "fetchedAt": "2026-10-25T19:10:17.692Z" }, "bioportal": null, "citations": [ { "doi": "10.1186/2041-1480-4-32", "count": 66, "source": "https://api.crossref.org/works/10.1186%2F2041-1480-4-32", "fetchedAt": "2026-10-25T19:10:18.428Z" } ], "git": { "commit": "de0a3d68847dbe61185d07b2eada28f9657935ba", "ref": "master", "headTag": null, "latestTag": { "name": "v2026-10-01", "commit": "ae820fbb2f40f68c00238a19a3f1f44b336b6ed9", "url": "https://github.com/FlyBase/drosophila-anatomy-developmental-ontology/releases/tag/v2026-10-01" }, "tagCount": 56, "tagDates": [ "2018-07-05", "2018-08-08", "2018-10-03", "2019-01-16", "2019-02-14", "2019-03-28", "2019-08-08", "2019-08-21", "2019-09-05", "2019-11-12", "2019-11-26", "2020-02-19", "2020-03-26", "2020-06-11", "2020-07-22", "2020-08-04", "2020-08-13", "2020-10-15", "2020-12-02", "2021-01-14", "2021-03-11", "2021-05-11", "2021-07-09", "2021-09-01", "2021-10-14", "2021-12-09", "2022-01-24", "2022-01-27", "2022-02-24", "2022-04-13", "2022-06-09", "2022-08-11", "2022-10-19", "2022-12-01", "2023-02-08", "2023-05-03", "2023-07-05", "2023-08-02", "2023-10-18", "2023-12-07", "2024-02-22", "2024-04-25", "2024-06-13", "2024-08-08", "2024-10-17", "2024-12-05", "2025-02-13", "2025-03-27", "2025-05-29", "2025-08-07", "2025-10-16", "2026-01-13", "2026-04-03", "2026-06-11", "2026-07-09", "2026-10-01" ], "url": "https://github.com/FlyBase/drosophila-anatomy-developmental-ontology/tree/de0a3d68847dbe61185d07b2eada28f9657935ba", "source": "https://github.com/FlyBase/drosophila-anatomy-developmental-ontology.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:18.557Z" }, "tib": null, "dashboard": { "ns": "fbbt", "checks": { "FP01 Open": "PASS", "FP02 Common Format": "PASS", "FP03 URIs": "PASS", "FP04 Versioning": "PASS", "FP05 Scope": "PASS", "FP06 Textual Definitions": "WARN", "FP07 Relations": "PASS", "FP08 Documented": "PASS", "FP09 Plurality of Users": "PASS", "FP11 Locus of Authority": "PASS", "FP12 Naming Conventions": "PASS", "FP16 Maintenance": "PASS", "FP20 Responsiveness": "PASS", "ROBOT Report": "WARN" }, "robot": { "ERROR": 0, "INFO": 0, "WARN": 1395 }, "consistent": true, "unsatisfiable": 0, "classes": 29179, "axioms": 459899, "owl2dl": true, "reusedPct": 1.66, "usedBy": [ "dpo" ], "oboScore": 0.48, "summary": "WARN", "checkedVersion": "http://purl.obolibrary.org/obo/fbbt/releases/2026-07-09/fbbt-base.owl", "checkedAt": "2026-07-18T13:19:41.801Z", "page": "https://dashboard.obofoundry.org/dashboard/fbbt/dashboard.html", "source": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "fetchedAt": "2026-10-25T19:10:20.368Z" }, "quality": null, "oops": { "error": "fetch failed", "checkedAt": "2026-10-25T19:07:21.583Z", "source": "data/quality/fbbt.json" }, "releases": { "dates": [ "2022-10-19", "2022-12-01", "2023-02-08", "2023-05-03", "2023-07-05", "2023-08-02", "2023-10-18", "2023-12-07", "2024-02-22", "2024-04-25", "2024-06-13", "2024-08-08", "2024-10-17", "2024-12-05", "2025-02-13", "2025-03-27", "2025-05-29", "2025-08-07", "2025-10-16", "2026-01-13", "2026-04-03", "2026-06-12", "2026-07-09", "2026-10-01" ], "lastYear": 5, "from": "GitHub releases" }, "bioregistry": { "prefix": "fbbt", "name": "Drosophila gross anatomy", "mappings": { "aberowl": "FBBT", "biocontext": "FBbt", "bioportal": "FB-BT", "fairsharing": "FAIRsharing.y2qkst", "go.resource": "FBbt", "obofoundry": "fbbt", "ols": "fbbt", "ontobee": "FBbt", "prefixcommons": "fbbt", "wikidata.entity": "Q81661620" }, "dependsOn": [], "appearsIn": [], "license": "CC-BY-4.0", "version": "2026-10-01", "deprecated": false, "page": "https://bioregistry.io/fbbt", "source": "https://bioregistry.io/api/registry/fbbt", "fetchedAt": "2026-10-25T19:10:18.355Z" }, "artifact": { "source": "https://release-assets.githubusercontent.com/github-production-release-asset/37205250/ca45cdfa-1b26-465c-bf57-07e086ac9c5d?sp=r&sv=2018-11-09&sr=b&spr=https&se=2026-10-25T19%3A59%3A07Z&rscd=attachment%3B+filename%3Dfbbt.owl&rsct=application%2Foctet-stream&skoid=96c2d410-5711-43a1-aedd-ab1947aa7ab0&sktid=398a6654-997b-47e9-b12b-9515b896b4de&skt=2026-10-25T18%3A58%3A56Z&ske=2026-10-25T19%3A59%3A07Z&sks=b&skv=2018-11-09&sig=lyNAM8VoWwYYyN6QbC8pzWyak%2BU8PG4195yvdyKIjlg%3D&jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmVsZWFzZS1hc3NldHMuZ2l0aHVidXNlcmNvbnRlbnQuY29tIiwia2V5Ijoia2V5MSIsImV4cCI6MTc5Mjk1OTAxOCwibmJmIjoxNzkyOTU1NDE4LCJwYXRoIjoicmVsZWFzZWFzc2V0cHJvZHVjdGlvbi5ibG9iLmNvcmUud2luZG93cy5uZXQifQ.nvxIZnwtLAHi6DJc_TiYYux4k621PAmLHwIJrCnpGMM&response-content-disposition=attachment%3B%20filename%3Dfbbt.owl&response-content-type=application%2Foctet-stream", "versionIri": "http://purl.obolibrary.org/obo/fbbt/releases/2026-10-01/fbbt.owl", "versionInfo": "2026-10-01", "etag": "\"0x8DF1FB3A4306186\"", "contentType": "application/octet-stream", "fetchedAt": "2026-10-25T19:10:19.658Z" }, "score": 89, "gross": 89, "earned": 89, "possible": 100, "qualityApplies": true, "penalty": { "score": 0, "reason": "active (last activity 2026-10-20)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.0 years → 4 × max(0, 0.0 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "A", "fair": 48, "breakdown": { "findable": { "score": 12, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 4, "max": 4, "detail": "purl.obolibrary.org" }, { "label": "Indexed in services (F4)", "pts": 5, "max": 5, "detail": "5: OLS, BioPortal, OBO Foundry, Bioregistry, FAIRsharing" }, { "label": "Citable reference (F2)", "pts": 3, "max": 3, "detail": "doi:10.1186/2041-1480-4-32" } ], "notes": [] }, "accessible": { "score": 12, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "download HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 3, "max": 3, "detail": "OBO Foundry, Bioregistry" } ], "notes": [] }, "interoperable": { "score": 12, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL, OBO" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL, OBO" }, { "label": "References other vocabularies (I3)", "pts": 4, "max": 4, "detail": "imports 11: bfo, caro, cl, cob, go, iao, ncbitaxon, omo…" } ], "notes": [] }, "reusable": { "score": 12, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "CC BY 4.0" }, { "label": "Release provenance (R1.2)", "pts": 4, "max": 4, "detail": "2026-10-01 (version IRI in the artefact)" }, { "label": "Community standards (R1.3)", "pts": 3, "max": 3, "detail": "OBO principles: 12/13 checks pass" } ], "notes": [] }, "quality": { "score": 20, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 4, "max": 4, "detail": "imports BFO, COB" }, { "label": "Standard relations (RO)", "pts": 2, "max": 2, "detail": "imports RO" }, { "label": "Logical consistency", "pts": 6, "max": 6, "detail": "consistent, 0 unsatisfiable classes (OBO Dashboard)" }, { "label": "ROBOT report: no errors", "pts": 2, "max": 2, "detail": "0 errors" }, { "label": "ROBOT report: warning density", "pts": 2, "max": 2, "detail": "1395 warnings / 29179 classes = 0.05" }, { "label": "Scaled 16/16 → 20", "pts": 4, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 15, "max": 16, "steps": [ { "label": "Recency", "pts": 10, "max": 10, "detail": "2026-10-20 → 0.2 months (≤ 3 months)" }, { "label": "Release cadence (12 months)", "pts": 5, "max": 6, "detail": "5 releases (GitHub releases)" } ], "notes": [ "Release cadence (12 months): 5 releases (GitHub releases)" ] }, "adoption": { "score": 6, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "2 projects" }, { "label": "Reused by other ontologies", "pts": 2, "max": 4, "detail": "4: dpo, aeo, efo, pride" }, { "label": "Community signal", "pts": 2, "max": 5, "detail": "max(stars 23 → 1, citations 66 → 2)" } ], "notes": [ "Documented adopting projects: 2 projects", "Reused by other ontologies: 4: dpo, aeo, efo, pride", "Community signal: max(stars 23 → 1, citations 66 → 2)" ] } }, "lastActivity": "2026-10-20T14:48:38Z", "adopterCount": 2, "reuseCount": 4, "importCount": 11, "registries": [ "OLS", "BioPortal", "OBO Foundry", "Bioregistry", "FAIRsharing" ], "evaluatedVersion": { "label": "2026-10-01", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/fbbt/releases/2026-10-01/fbbt.owl", "inArtefact": true, "all": [ { "label": "2026-10-01", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/fbbt/releases/2026-10-01/fbbt.owl", "inArtefact": true }, { "label": "2026-10-01", "from": "version info in the artefact", "value": "2026-10-01", "inArtefact": true }, { "label": "2026-10-01", "from": "OLS", "value": "http://purl.obolibrary.org/obo/fbbt/releases/2026-10-01/fbbt.owl" }, { "label": "v2026-10-01", "from": "latest GitHub release", "value": "https://github.com/FlyBase/drosophila-anatomy-developmental-ontology/releases/tag/v2026-10-01" }, { "label": "v2026-10-01 + commit de0a3d6", "from": "latest release tag; master evaluated at commit", "value": "de0a3d68847dbe61185d07b2eada28f9657935ba", "release": "v2026-10-01" }, { "label": "commit de0a3d6", "from": "master at evaluation time", "value": "de0a3d68847dbe61185d07b2eada28f9657935ba" }, { "label": "file of 2026-10-01", "from": "Last-Modified of the download", "value": "2026-10-01T12:00:52.000Z" } ] }, "evaluatedAt": "2026-10-25T19:10:21.209Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "FlyBase", "url": "https://flybase.org/", "note": "Expression and phenotype annotation", "source": "curated" }, { "name": "Virtual Fly Brain", "url": "https://www.virtualflybrain.org/", "note": "Neuron types and connectome integration", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 87, "grade": "A", "fair": null, "version": "2026-10-01", "terms": 29776, "stars": 23, "license": "CC BY 4.0", "lastActivity": "2026-10-20T14:48:38Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 90, "grade": "A", "fair": 60, "version": "2026-10-01", "terms": 29776, "stars": 23, "license": "CC BY 4.0", "lastActivity": "2026-10-20T14:48:38Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 90, "grade": "A", "fair": 60, "version": "2026-10-01", "terms": 29776, "stars": 23, "license": "CC BY 4.0", "lastActivity": "2026-10-20T14:48:38Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 89, "grade": "A", "fair": 48, "version": "2026-10-01", "terms": 29776, "stars": 23, "license": "CC BY 4.0", "lastActivity": "2026-10-20T14:48:38Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 89, "grade": "A", "fair": 48, "version": "2026-10-01", "terms": 29776, "stars": 23, "license": "CC BY 4.0", "lastActivity": "2026-10-20T14:48:38Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 89, "grade": "A", "fair": 48, "version": "2026-10-01", "terms": 29776, "stars": 23, "license": "CC BY 4.0", "lastActivity": "2026-10-20T14:48:38Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 90 → 89 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 87 → 90 · rubric v1.0 → v2.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/fbbt/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "http://purl.obolibrary.org/obo/fbbt.owl", "neuroschema:evaluatedVersion": "http://purl.obolibrary.org/obo/fbbt/releases/2026-10-01/fbbt.owl" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://www.virtualflybrain.org/", "prov:atTime": "2026-10-25T19:10:19.486Z" }, { "@id": "https://github.com/FlyBase/drosophila-anatomy-developmental-ontology", "prov:atTime": "2026-10-25T19:10:18.899Z" }, { "@id": "http://purl.obolibrary.org/obo/fbbt.owl", "prov:atTime": "2026-10-25T19:10:19.631Z" }, { "@id": "https://release-assets.githubusercontent.com/github-production-release-asset/37205250/ca45cdfa-1b26-465c-bf57-07e086ac9c5d?sp=r&sv=2018-11-09&sr=b&spr=https&se=2026-10-25T19%3A59%3A07Z&rscd=attachment%3B+filename%3Dfbbt.owl&rsct=application%2Foctet-stream&skoid=96c2d410-5711-43a1-aedd-ab1947aa7ab0&sktid=398a6654-997b-47e9-b12b-9515b896b4de&skt=2026-10-25T18%3A58%3A56Z&ske=2026-10-25T19%3A59%3A07Z&sks=b&skv=2018-11-09&sig=lyNAM8VoWwYYyN6QbC8pzWyak%2BU8PG4195yvdyKIjlg%3D&jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmVsZWFzZS1hc3NldHMuZ2l0aHVidXNlcmNvbnRlbnQuY29tIiwia2V5Ijoia2V5MSIsImV4cCI6MTc5Mjk1OTAxOCwibmJmIjoxNzkyOTU1NDE4LCJwYXRoIjoicmVsZWFzZWFzc2V0cHJvZHVjdGlvbi5ibG9iLmNvcmUud2luZG93cy5uZXQifQ.nvxIZnwtLAHi6DJc_TiYYux4k621PAmLHwIJrCnpGMM&response-content-disposition=attachment%3B%20filename%3Dfbbt.owl&response-content-type=application%2Foctet-stream", "prov:atTime": "2026-10-25T19:10:19.658Z" }, { "@id": "https://github.com/FlyBase/drosophila-anatomy-developmental-ontology.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:18.557Z" }, { "@id": "https://api.github.com/repos/FlyBase/drosophila-anatomy-developmental-ontology", "prov:atTime": "2026-10-25T19:10:18.826Z" }, { "@id": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/fbbt", "prov:atTime": "2026-10-25T19:10:19.843Z" }, { "@id": "https://obofoundry.org/registry/ontologies.jsonld", "prov:atTime": "2026-10-25T19:10:17.692Z" }, { "@id": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "prov:atTime": "2026-10-25T19:10:20.368Z" }, { "@id": "https://bioregistry.io/api/registry/fbbt", "prov:atTime": "2026-10-25T19:10:18.355Z" }, { "@id": "https://api.crossref.org/works/10.1186%2F2041-1480-4-32", "prov:atTime": "2026-10-25T19:10:18.428Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:21.209Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#fbbt" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#fbbt" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#fbbt" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#fbbt" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#fbbt" } ] } }, { "id": "wbbt", "acronym": "WBbt", "name": "C. elegans Gross Anatomy Ontology", "category": "anatomy", "kind": "ontology", "description": "Anatomy of Caenorhabditis elegans, including every identified neuron of its 302-neuron nervous system.", "formats": [ "OWL", "OBO" ], "species": [ "C. elegans" ], "maintainer": "WormBase", "license": "CC BY 4.0", "homepage": "https://wormbase.org/", "repository": "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology", "download": "http://purl.obolibrary.org/obo/wbbt.owl", "ols": "wbbt", "obo": "wbbt", "publications": [], "usedBy": [ { "name": "WormBase", "url": "https://wormbase.org/", "note": "Expression and phenotype annotation" } ], "tags": [ "anatomy", "neurons", "c. elegans", "OBO Foundry" ], "url": "https://neuroschema.org/o/wbbt/", "evaluation": { "links": { "homepage": { "url": "https://wormbase.org/", "code": 403, "state": "blocked", "checkedAt": "2026-10-25T19:10:19.560Z" }, "repository": { "url": "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:18.816Z" }, "download": { "url": "http://purl.obolibrary.org/obo/wbbt.owl", "code": 200, "state": "ok", "resolvedUrl": "https://raw.githubusercontent.com/obophenotype/c-elegans-gross-anatomy-ontology/master/wbbt.owl", "checkedAt": "2026-10-25T19:10:20.251Z" } }, "github": { "slug": "obophenotype/c-elegans-gross-anatomy-ontology", "stars": 7, "forks": 2, "openIssues": 6, "pushedAt": "2026-03-11T18:21:06Z", "archived": false, "license": "CC-BY-4.0", "latestRelease": { "tag": "v2025-08-18", "date": "2025-08-19T06:48:55Z", "url": "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology/releases/tag/v2025-08-18" }, "source": "https://api.github.com/repos/obophenotype/c-elegans-gross-anatomy-ontology", "fetchedAt": "2026-10-25T19:10:18.808Z" }, "ols": { "portal": "OLS (EMBL-EBI)", "id": "wbbt", "api": "v2", "title": "C. elegans Gross Anatomy Ontology", "iri": "http://purl.obolibrary.org/obo/wbbt.owl", "versionIri": "http://purl.obolibrary.org/obo/wbbt/releases/2025-08-19/wbbt.owl", "version": "2025-08-19", "releaseDate": "2025-08-19", "terms": 7573, "properties": 188, "individuals": 48, "importsFrom": [ "bfo", "dc", "dcterms", "envo", "go", "iao", "oio", "owl", "pato", "rdfs", "ro", "skos", "uberon" ], "exportsTo": [ "wbphenotype" ], "languages": [ "en" ], "loaded": "2026-10-25T00:12:16.454679612", "sourceFileTimestamp": "Sun Oct 25 00:12:13 UTC 2026", "obsolete": false, "status": "LOADED", "page": "https://www.ebi.ac.uk/ols4/ontologies/wbbt", "source": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/wbbt", "fetchedAt": "2026-10-25T19:10:18.543Z" }, "obo": { "id": "wbbt", "status": "active", "domain": "anatomy and development", "license": "CC BY 4.0", "usages": [ { "user": "https://www.wormbase.org/", "type": "annotation", "description": "WormBase uses WBbt to curate anatomical expression patterns and anatomy function annotations, and to allow search and indexing on the WormBase site" } ], "source": "https://obofoundry.org/registry/ontologies.jsonld", "fetchedAt": "2026-10-25T19:10:17.692Z" }, "bioportal": null, "citations": [], "git": { "commit": "1d905a5312239c40db938171fffc60bf8f3fa041", "ref": "master", "headTag": null, "latestTag": { "name": "v2025-08-18", "commit": "8fe7d700d26d70b534d5de34ad2c7c39b4ce50a1", "url": "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology/releases/tag/v2025-08-18" }, "tagCount": 32, "tagDates": [ "2019-07-23", "2019-07-25", "2019-09-09", "2019-10-25", "2020-01-24", "2020-03-26", "2020-04-24", "2020-06-25", "2020-09-21", "2020-12-14", "2021-07-06", "2021-09-27", "2021-12-13", "2022-03-22", "2022-06-13", "2023-01-03", "2023-04-07", "2023-07-01", "2023-09-14", "2024-01-04", "2024-04-01", "2024-07-01", "2024-09-24", "2025-01-02", "2025-03-26", "2025-08-18" ], "url": "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology/tree/1d905a5312239c40db938171fffc60bf8f3fa041", "source": "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:18.486Z" }, "tib": null, "dashboard": { "ns": "wbbt", "checks": { "FP01 Open": "PASS", "FP02 Common Format": "PASS", "FP03 URIs": "PASS", "FP04 Versioning": "ERROR", "FP05 Scope": "PASS", "FP06 Textual Definitions": "ERROR", "FP07 Relations": "INFO", "FP08 Documented": "PASS", "FP09 Plurality of Users": "PASS", "FP11 Locus of Authority": "PASS", "FP12 Naming Conventions": "PASS", "FP16 Maintenance": "PASS", "FP20 Responsiveness": "PASS", "ROBOT Report": "ERROR" }, "robot": { "ERROR": 1422, "INFO": 4744, "WARN": 292 }, "consistent": true, "unsatisfiable": 0, "classes": 7555, "axioms": 56038, "owl2dl": true, "reusedPct": 0.46, "usedBy": [ "wbphenotype" ], "oboScore": 0.399, "summary": "ERROR", "checkedVersion": "http://purl.obolibrary.org/obo/wbbt/releases/2025-08-19/wbbt-base.owl", "checkedAt": "2025-12-11T03:30:21.879Z", "page": "https://dashboard.obofoundry.org/dashboard/wbbt/dashboard.html", "source": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "fetchedAt": "2026-10-25T19:10:20.368Z" }, "quality": null, "oops": { "error": "fetch failed", "checkedAt": "2026-10-25T19:07:32.076Z", "source": "data/quality/wbbt.json" }, "releases": { "dates": [ "2019-07-25", "2019-09-23", "2019-11-18", "2020-01-24", "2020-03-27", "2020-06-25", "2020-09-21", "2020-12-14", "2021-07-06", "2021-09-27", "2021-12-14", "2022-03-22", "2022-06-13", "2023-01-03", "2023-04-07", "2023-07-01", "2023-09-14", "2024-01-04", "2024-04-01", "2024-07-01", "2024-09-24", "2025-01-02", "2025-03-26", "2025-08-19" ], "lastYear": 0, "from": "GitHub releases" }, "bioregistry": { "prefix": "wbbt", "name": "C. elegans Gross Anatomy Ontology", "mappings": { "aberowl": "WBBT", "biocontext": "WBbt", "biolink.resource": "WBbt", "bioportal": "WB-BT", "fairsharing": "FAIRsharing.phk7dd", "go.resource": "WBbt", "obofoundry": "wbbt", "ols": "wbbt", "ontobee": "WBbt", "prefixcommons": "wbbt", "wikidata.entity": "Q81661834" }, "dependsOn": [], "appearsIn": [], "license": "CC-BY-4.0", "version": "2025-08-19", "deprecated": false, "page": "https://bioregistry.io/wbbt", "source": "https://bioregistry.io/api/registry/wbbt", "fetchedAt": "2026-10-25T19:10:18.386Z" }, "artifact": { "source": "https://raw.githubusercontent.com/obophenotype/c-elegans-gross-anatomy-ontology/master/wbbt.owl", "versionIri": "http://purl.obolibrary.org/obo/wbbt/releases/2025-08-19/wbbt.owl", "etag": "\"8cbd0ca28e03cf7675eb4e05f54533a450f0ba6bce1a9cc14300a7e6152a288a\"", "contentType": "text/plain", "fetchedAt": "2026-10-25T19:10:19.976Z" }, "score": 71, "gross": 71, "earned": 71, "possible": 100, "qualityApplies": true, "penalty": { "score": 0, "reason": "active (last activity 2026-03-11)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.6 years → 4 × max(0, 0.6 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "B", "fair": 44, "breakdown": { "findable": { "score": 9, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 4, "max": 4, "detail": "purl.obolibrary.org" }, { "label": "Indexed in services (F4)", "pts": 5, "max": 5, "detail": "5: OLS, BioPortal, OBO Foundry, Bioregistry, FAIRsharing" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 12, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 403" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "download HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 3, "max": 3, "detail": "OBO Foundry, Bioregistry" } ], "notes": [] }, "interoperable": { "score": 12, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL, OBO" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL, OBO" }, { "label": "References other vocabularies (I3)", "pts": 4, "max": 4, "detail": "imports 7: bfo, envo, go, iao, pato, ro, uberon" } ], "notes": [] }, "reusable": { "score": 11, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "CC BY 4.0" }, { "label": "Release provenance (R1.2)", "pts": 4, "max": 4, "detail": "2025-08-19 (version IRI in the artefact)" }, { "label": "Community standards (R1.3)", "pts": 2, "max": 3, "detail": "OBO principles: 10/13 checks pass" } ], "notes": [ "Community standards (R1.3): OBO principles: 10/13 checks pass" ] }, "quality": { "score": 18, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 4, "max": 4, "detail": "imports BFO" }, { "label": "Standard relations (RO)", "pts": 2, "max": 2, "detail": "imports RO" }, { "label": "Logical consistency", "pts": 6, "max": 6, "detail": "consistent, 0 unsatisfiable classes (OBO Dashboard)" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "1422 errors" }, { "label": "ROBOT report: warning density", "pts": 2, "max": 2, "detail": "292 warnings / 7555 classes = 0.04" }, { "label": "Scaled 14/16 → 20", "pts": 4, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "ROBOT report: no errors: 1422 errors", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 5, "max": 16, "steps": [ { "label": "Recency", "pts": 5, "max": 10, "detail": "2026-03-11 → 7.5 months (≤ 1 year)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases (GitHub releases)" } ], "notes": [ "Recency: 2026-03-11 → 7.5 months (≤ 1 year)", "Release cadence (12 months): 0 releases (GitHub releases)" ] }, "adoption": { "score": 4, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "1 project" }, { "label": "Reused by other ontologies", "pts": 1, "max": 4, "detail": "1: wbphenotype" }, { "label": "Community signal", "pts": 1, "max": 5, "detail": "max(stars 7 → 1, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 1 project", "Reused by other ontologies: 1: wbphenotype", "Community signal: max(stars 7 → 1, citations 0 → 0)" ] } }, "lastActivity": "2026-03-11T18:21:06Z", "adopterCount": 1, "reuseCount": 1, "importCount": 7, "registries": [ "OLS", "BioPortal", "OBO Foundry", "Bioregistry", "FAIRsharing" ], "evaluatedVersion": { "label": "2025-08-19", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/wbbt/releases/2025-08-19/wbbt.owl", "inArtefact": true, "all": [ { "label": "2025-08-19", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/wbbt/releases/2025-08-19/wbbt.owl", "inArtefact": true }, { "label": "2025-08-19", "from": "OLS", "value": "http://purl.obolibrary.org/obo/wbbt/releases/2025-08-19/wbbt.owl" }, { "label": "v2025-08-18", "from": "latest GitHub release", "value": "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology/releases/tag/v2025-08-18" }, { "label": "v2025-08-18 + commit 1d905a5", "from": "latest release tag; master evaluated at commit", "value": "1d905a5312239c40db938171fffc60bf8f3fa041", "release": "v2025-08-18" }, { "label": "commit 1d905a5", "from": "master at evaluation time", "value": "1d905a5312239c40db938171fffc60bf8f3fa041" } ] }, "evaluatedAt": "2026-10-25T19:10:20.711Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "WormBase", "url": "https://wormbase.org/", "note": "Expression and phenotype annotation", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 76, "grade": "B", "fair": null, "version": "2025-08-19", "terms": 7573, "stars": 7, "license": "CC BY 4.0", "lastActivity": "2026-03-11T18:21:06Z", "adopters": 1, "links": { "homepage": "blocked", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 76, "grade": "B", "fair": 55, "version": "2025-08-19", "terms": 7573, "stars": 7, "license": "CC BY 4.0", "lastActivity": "2026-03-11T18:21:06Z", "adopters": 1, "links": { "homepage": "blocked", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 76, "grade": "B", "fair": 55, "version": "2025-08-19", "terms": 7573, "stars": 7, "license": "CC BY 4.0", "lastActivity": "2026-03-11T18:21:06Z", "adopters": 1, "links": { "homepage": "blocked", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 71, "grade": "B", "fair": 44, "version": "2025-08-19", "terms": 7573, "stars": 7, "license": "CC BY 4.0", "lastActivity": "2026-03-11T18:21:06Z", "adopters": 1, "links": { "homepage": "blocked", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 71, "grade": "B", "fair": 44, "version": "2025-08-19", "terms": 7573, "stars": 7, "license": "CC BY 4.0", "lastActivity": "2026-03-11T18:21:06Z", "adopters": 1, "links": { "homepage": "blocked", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 60, "grade": "C", "fair": 44, "version": "2025-08-19", "terms": 7573, "stars": 7, "license": "CC BY 4.0", "lastActivity": "2026-03-11T18:21:06Z", "adopters": 1, "links": { "homepage": "blocked", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 71 → 60 (grade B → C) · rubric v3.0 → v3.3" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 76 → 71 · rubric v2.2 → v3.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/wbbt/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "http://purl.obolibrary.org/obo/wbbt.owl", "neuroschema:evaluatedVersion": "http://purl.obolibrary.org/obo/wbbt/releases/2025-08-19/wbbt.owl" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://wormbase.org/", "prov:atTime": "2026-10-25T19:10:19.560Z" }, { "@id": "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology", "prov:atTime": "2026-10-25T19:10:18.816Z" }, { "@id": "http://purl.obolibrary.org/obo/wbbt.owl", "prov:atTime": "2026-10-25T19:10:20.251Z" }, { "@id": "https://raw.githubusercontent.com/obophenotype/c-elegans-gross-anatomy-ontology/master/wbbt.owl", "prov:atTime": "2026-10-25T19:10:19.976Z" }, { "@id": "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:18.486Z" }, { "@id": "https://api.github.com/repos/obophenotype/c-elegans-gross-anatomy-ontology", "prov:atTime": "2026-10-25T19:10:18.808Z" }, { "@id": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/wbbt", "prov:atTime": "2026-10-25T19:10:18.543Z" }, { "@id": "https://obofoundry.org/registry/ontologies.jsonld", "prov:atTime": "2026-10-25T19:10:17.692Z" }, { "@id": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "prov:atTime": "2026-10-25T19:10:20.368Z" }, { "@id": "https://bioregistry.io/api/registry/wbbt", "prov:atTime": "2026-10-25T19:10:18.386Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:20.711Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#wbbt" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#wbbt" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#wbbt" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#wbbt" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#wbbt" } ] } }, { "id": "ccfv3", "acronym": "CCFv3", "name": "Allen Mouse Brain Common Coordinate Framework", "category": "atlases", "kind": "atlas", "description": "A 3D reference space for the adult mouse brain with annotated regions at 10 µm resolution. The de facto standard for registering mouse brain data.", "formats": [ "NRRD", "JSON" ], "species": [ "Mouse" ], "maintainer": "Allen Institute", "homepage": "https://atlas.brain-map.org/", "publications": [ { "title": "The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas", "doi": "10.1016/j.cell.2020.04.007", "year": 2020 } ], "usedBy": [ { "name": "BrainGlobe", "url": "https://brainglobe.info/", "note": "Atlas API and registration tools" }, { "name": "Allen Brain Cell Atlas", "url": "https://portal.brain-map.org/atlases-and-data/bkp/abc-atlas", "note": "Spatial mapping of cell types" } ], "tags": [ "reference space", "mouse", "registration" ], "url": "https://neuroschema.org/o/ccfv3/", "evaluation": { "links": { "homepage": { "url": "https://atlas.brain-map.org/", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:20.406Z" }, "repository": null, "download": null }, "github": null, "ols": null, "obo": null, "bioportal": null, "citations": [ { "doi": "10.1016/j.cell.2020.04.007", "count": 1477, "source": "https://api.crossref.org/works/10.1016%2Fj.cell.2020.04.007", "fetchedAt": "2026-10-25T19:10:20.433Z" } ], "git": null, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [], "lastYear": 0, "from": null }, "bioregistry": null, "artifact": null, "score": 11, "gross": 16, "earned": 13, "possible": 80, "qualityApplies": false, "penalty": { "score": -5, "reason": "no commits, releases or dated files found", "steps": [ { "label": "No activity evidence", "pts": -5, "detail": "no commits, releases or dated files found" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 6, "breakdown": { "findable": { "score": 3, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 3, "max": 3, "detail": "doi:10.1016/j.cell.2020.04.007" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere" ] }, "accessible": { "score": 3, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 0, "max": 6, "detail": "no download or repository listed" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Artefact retrievable over HTTP(S) (A1): no download or repository listed", "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 0, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 0, "max": 5, "detail": "none of: NRRD, JSON" }, { "label": "Semantic-web IRIs (I2)", "pts": 0, "max": 3, "detail": "no RDF/OWL/JSON-LD representation" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "Formal machine-readable format (I1): none of: NRRD, JSON", "Semantic-web IRIs (I2): no RDF/OWL/JSON-LD representation", "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 0, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 0, "max": 4, "detail": "no version in artefact, registry or release tags" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): no version in artefact, registry or release tags", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Not applicable", "pts": 0, "max": 0, "detail": "atlas without an OWL/OBO/RDF artefact; total scaled from 80 to 100" } ], "notes": [], "applicable": false }, "maintenance": { "score": 0, "max": 16, "steps": [ { "label": "Recency", "pts": 0, "max": 10, "detail": "no activity evidence" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases" } ], "notes": [ "Recency: no activity evidence", "Release cadence (12 months): 0 releases" ] }, "adoption": { "score": 7, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "2 projects" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 5, "max": 5, "detail": "max(stars 0 → 0, citations 1477 → 5)" } ], "notes": [ "Documented adopting projects: 2 projects", "Reused by other ontologies: 0" ] } }, "lastActivity": null, "adopterCount": 2, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": null, "evaluatedAt": "2026-10-25T19:10:20.433Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "BrainGlobe", "url": "https://brainglobe.info/", "note": "Atlas API and registration tools", "source": "curated" }, { "name": "Allen Brain Cell Atlas", "url": "https://portal.brain-map.org/atlases-and-data/bkp/abc-atlas", "note": "Spatial mapping of cell types", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 27, "grade": "D", "fair": null, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 2, "links": { "homepage": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 25, "grade": "D", "fair": 10, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 2, "links": { "homepage": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 20, "grade": "D", "fair": 10, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 2, "links": { "homepage": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 11, "grade": "D", "fair": 6, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 2, "links": { "homepage": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 11, "grade": "E", "fair": 6, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 2, "links": { "homepage": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 11, "grade": "E", "fair": 6, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 2, "links": { "homepage": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 20 → 11 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 25 → 20 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 27 → 25 · rubric v1.0 → v2.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/ccfv3/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://atlas.brain-map.org/", "neuroschema:evaluatedVersion": null }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://atlas.brain-map.org/", "prov:atTime": "2026-10-25T19:10:20.406Z" }, { "@id": "https://api.crossref.org/works/10.1016%2Fj.cell.2020.04.007", "prov:atTime": "2026-10-25T19:10:20.433Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:20.433Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#ccfv3" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#ccfv3" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#ccfv3" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#ccfv3" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#ccfv3" } ] } }, { "id": "whs-rat", "acronym": "WHS", "name": "Waxholm Space Atlas of the Sprague Dawley Rat Brain", "category": "atlases", "kind": "atlas", "description": "An open, MRI/DTI-based volumetric atlas and reference space for the rat brain with delineated regions.", "formats": [ "NIfTI", "Label tables" ], "species": [ "Rat" ], "maintainer": "University of Oslo (NeSys)", "homepage": "https://www.nitrc.org/projects/whs-sd-atlas", "publications": [ { "title": "Waxholm Space atlas of the Sprague Dawley rat brain", "doi": "10.1016/j.neuroimage.2014.04.001", "year": 2014 } ], "usedBy": [ { "name": "EBRAINS", "url": "https://ebrains.eu/", "note": "Rat reference atlas" } ], "tags": [ "reference space", "rat", "MRI" ], "url": "https://neuroschema.org/o/whs-rat/", "evaluation": { "links": { "homepage": { "url": "https://www.nitrc.org/projects/whs-sd-atlas", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:21.376Z" }, "repository": null, "download": null }, "github": null, "ols": null, "obo": null, "bioportal": null, "citations": [ { "doi": "10.1016/j.neuroimage.2014.04.001", "count": 412, "source": "https://api.crossref.org/works/10.1016%2Fj.neuroimage.2014.04.001", "fetchedAt": "2026-10-25T19:10:20.500Z" } ], "git": null, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [], "lastYear": 0, "from": null }, "bioregistry": null, "artifact": null, "score": 10, "gross": 15, "earned": 12, "possible": 80, "qualityApplies": false, "penalty": { "score": -5, "reason": "no commits, releases or dated files found", "steps": [ { "label": "No activity evidence", "pts": -5, "detail": "no commits, releases or dated files found" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 6, "breakdown": { "findable": { "score": 3, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 3, "max": 3, "detail": "doi:10.1016/j.neuroimage.2014.04.001" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere" ] }, "accessible": { "score": 3, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 0, "max": 6, "detail": "no download or repository listed" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Artefact retrievable over HTTP(S) (A1): no download or repository listed", "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 0, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 0, "max": 5, "detail": "none of: NIfTI, Label tables" }, { "label": "Semantic-web IRIs (I2)", "pts": 0, "max": 3, "detail": "no RDF/OWL/JSON-LD representation" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "Formal machine-readable format (I1): none of: NIfTI, Label tables", "Semantic-web IRIs (I2): no RDF/OWL/JSON-LD representation", "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 0, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 0, "max": 4, "detail": "no version in artefact, registry or release tags" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): no version in artefact, registry or release tags", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Not applicable", "pts": 0, "max": 0, "detail": "atlas without an OWL/OBO/RDF artefact; total scaled from 80 to 100" } ], "notes": [], "applicable": false }, "maintenance": { "score": 0, "max": 16, "steps": [ { "label": "Recency", "pts": 0, "max": 10, "detail": "no activity evidence" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases" } ], "notes": [ "Recency: no activity evidence", "Release cadence (12 months): 0 releases" ] }, "adoption": { "score": 6, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "1 project" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 4, "max": 5, "detail": "max(stars 0 → 0, citations 412 → 4)" } ], "notes": [ "Documented adopting projects: 1 project", "Reused by other ontologies: 0", "Community signal: max(stars 0 → 0, citations 412 → 4)" ] } }, "lastActivity": null, "adopterCount": 1, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": null, "evaluatedAt": "2026-10-25T19:10:21.376Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "EBRAINS", "url": "https://ebrains.eu/", "note": "Rat reference atlas", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 21, "grade": "D", "fair": null, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 21, "grade": "D", "fair": 10, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 16, "grade": "D", "fair": 10, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 10, "grade": "D", "fair": 6, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 10, "grade": "E", "fair": 6, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 10, "grade": "E", "fair": 6, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 16 → 10 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 21 → 16 · rubric v2.0 → v2.2" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/whs-rat/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://www.nitrc.org/projects/whs-sd-atlas", "neuroschema:evaluatedVersion": null }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://www.nitrc.org/projects/whs-sd-atlas", "prov:atTime": "2026-10-25T19:10:21.376Z" }, { "@id": "https://api.crossref.org/works/10.1016%2Fj.neuroimage.2014.04.001", "prov:atTime": "2026-10-25T19:10:20.500Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:21.376Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#whs-rat" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#whs-rat" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#whs-rat" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#whs-rat" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#whs-rat" } ] } }, { "id": "julich-brain", "acronym": "Julich-Brain", "name": "Julich-Brain Cytoarchitectonic Atlas", "category": "atlases", "kind": "atlas", "description": "Probabilistic cytoarchitectonic maps of the human brain, available through EBRAINS and the siibra toolsuite.", "formats": [ "NIfTI", "openMINDS JSON-LD" ], "species": [ "Human" ], "maintainer": "Forschungszentrum Jülich / EBRAINS", "homepage": "https://www.ebrains.eu/tools/human-brain-atlas", "publications": [ { "title": "Julich-Brain: A 3D probabilistic atlas of the human brain's cytoarchitecture", "doi": "10.1126/science.abb4588", "year": 2020 } ], "usedBy": [ { "name": "EBRAINS", "url": "https://ebrains.eu/", "note": "Human multilevel atlas" } ], "tags": [ "parcellation", "human", "cytoarchitecture" ], "url": "https://neuroschema.org/o/julich-brain/", "evaluation": { "links": { "homepage": { "url": "https://www.ebrains.eu/tools/human-brain-atlas", "code": 200, "state": "ok", "resolvedUrl": "https://ebrains.eu/data-tools-services/brain-atlases/human-brain", "lastModified": "2026-10-25T19:08:18.000Z", "checkedAt": "2026-10-25T19:10:22.706Z" }, "repository": null, "download": null }, "github": null, "ols": null, "obo": null, "bioportal": null, "citations": [ { "doi": "10.1126/science.abb4588", "count": 636, "source": "https://api.crossref.org/works/10.1126%2Fscience.abb4588", "fetchedAt": "2026-10-25T19:10:20.546Z" } ], "git": null, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [], "lastYear": 0, "from": null }, "bioregistry": null, "artifact": null, "score": 10, "gross": 15, "earned": 12, "possible": 80, "qualityApplies": false, "penalty": { "score": -5, "reason": "no commits, releases or dated files found", "steps": [ { "label": "No activity evidence", "pts": -5, "detail": "no commits, releases or dated files found" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 6, "breakdown": { "findable": { "score": 3, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 3, "max": 3, "detail": "doi:10.1126/science.abb4588" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere" ] }, "accessible": { "score": 3, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 0, "max": 6, "detail": "no download or repository listed" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Artefact retrievable over HTTP(S) (A1): no download or repository listed", "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 0, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 0, "max": 5, "detail": "none of: NIfTI, openMINDS JSON-LD" }, { "label": "Semantic-web IRIs (I2)", "pts": 0, "max": 3, "detail": "no RDF/OWL/JSON-LD representation" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "Formal machine-readable format (I1): none of: NIfTI, openMINDS JSON-LD", "Semantic-web IRIs (I2): no RDF/OWL/JSON-LD representation", "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 0, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 0, "max": 4, "detail": "no version in artefact, registry or release tags" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): no version in artefact, registry or release tags", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Not applicable", "pts": 0, "max": 0, "detail": "atlas without an OWL/OBO/RDF artefact; total scaled from 80 to 100" } ], "notes": [], "applicable": false }, "maintenance": { "score": 0, "max": 16, "steps": [ { "label": "Recency", "pts": 0, "max": 10, "detail": "no activity evidence" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases" } ], "notes": [ "Recency: no activity evidence", "Release cadence (12 months): 0 releases" ] }, "adoption": { "score": 6, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "1 project" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 4, "max": 5, "detail": "max(stars 0 → 0, citations 636 → 4)" } ], "notes": [ "Documented adopting projects: 1 project", "Reused by other ontologies: 0", "Community signal: max(stars 0 → 0, citations 636 → 4)" ] } }, "lastActivity": null, "adopterCount": 1, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": null, "evaluatedAt": "2026-10-25T19:10:22.706Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "EBRAINS", "url": "https://ebrains.eu/", "note": "Human multilevel atlas", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 24, "grade": "D", "fair": null, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 23, "grade": "D", "fair": 10, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 18, "grade": "D", "fair": 10, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 10, "grade": "D", "fair": 6, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 10, "grade": "E", "fair": 6, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 10, "grade": "E", "fair": 6, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 18 → 10 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 23 → 18 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 24 → 23 · rubric v1.0 → v2.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/julich-brain/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://www.ebrains.eu/tools/human-brain-atlas", "neuroschema:evaluatedVersion": null }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://www.ebrains.eu/tools/human-brain-atlas", "prov:atTime": "2026-10-25T19:10:22.706Z" }, { "@id": "https://api.crossref.org/works/10.1126%2Fscience.abb4588", "prov:atTime": "2026-10-25T19:10:20.546Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:22.706Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#julich-brain" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#julich-brain" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#julich-brain" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#julich-brain" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#julich-brain" } ] } }, { "id": "cl", "acronym": "CL", "name": "Cell Ontology", "category": "cells", "kind": "ontology", "description": "The reference ontology of cell types across organisms, with a large and growing branch of neuron and glial types.", "formats": [ "OWL", "OBO", "JSON" ], "species": [ "Multi-species" ], "maintainer": "Cell Ontology community", "license": "CC BY 4.0", "homepage": "https://obophenotype.github.io/cell-ontology/", "repository": "https://github.com/obophenotype/cell-ontology", "download": "http://purl.obolibrary.org/obo/cl.owl", "ols": "cl", "obo": "cl", "publications": [ { "title": "The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability", "doi": "10.1186/s13326-016-0088-7", "year": 2016 } ], "usedBy": [ { "name": "CELLxGENE", "url": "https://cellxgene.cziscience.com/", "note": "Cell type annotation standard" }, { "name": "Human Cell Atlas", "url": "https://www.humancellatlas.org/", "note": "Cell type annotation" }, { "name": "BICAN", "url": "https://www.portal.brain-bican.org/", "note": "Brain cell types" } ], "tags": [ "cell types", "neurons", "glia", "OBO Foundry" ], "url": "https://neuroschema.org/o/cl/", "evaluation": { "links": { "homepage": { "url": "https://obophenotype.github.io/cell-ontology/", "code": 200, "state": "ok", "lastModified": "2026-10-23T13:07:17.000Z", "checkedAt": "2026-10-25T19:10:20.803Z" }, "repository": { "url": "https://github.com/obophenotype/cell-ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:21.187Z" }, "download": { "url": "http://purl.obolibrary.org/obo/cl.owl", "code": 200, "state": "ok", "resolvedUrl": "https://release-assets.githubusercontent.com/github-production-release-asset/36889083/b2e94d4d-72d7-45ad-8d84-c0d279e1cfd8?sp=r&sv=2018-11-09&sr=b&spr=https&se=2026-10-25T20%3A00%3A27Z&rscd=attachment%3B+filename%3Dcl.owl&rsct=application%2Foctet-stream&skoid=96c2d410-5711-43a1-aedd-ab1947aa7ab0&sktid=398a6654-997b-47e9-b12b-9515b896b4de&skt=2026-10-25T19%3A00%3A02Z&ske=2026-10-25T20%3A00%3A27Z&sks=b&skv=2018-11-09&sig=iiBaWV%2BBoaXI1ye86VIKRDXhkZt8o3xRZVfSZUW%2Bvdk%3D&jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmVsZWFzZS1hc3NldHMuZ2l0aHVidXNlcmNvbnRlbnQuY29tIiwia2V5Ijoia2V5MSIsImV4cCI6MTc5Mjk1NzIyMCwibmJmIjoxNzkyOTU1NDIwLCJwYXRoIjoicmVsZWFzZWFzc2V0cHJvZHVjdGlvbi5ibG9iLmNvcmUud2luZG93cy5uZXQifQ.1lmue_Oi2d7bW8BChMxicn3UZ7cT9w4Dp0S1jHzgxyM&response-content-disposition=attachment%3B%20filename%3Dcl.owl&response-content-type=application%2Foctet-stream", "lastModified": "2026-06-08T14:39:01.000Z", "checkedAt": "2026-10-25T19:10:21.081Z" } }, "github": { "slug": "obophenotype/cell-ontology", "stars": 217, "forks": 59, "openIssues": 390, "pushedAt": "2026-10-23T15:17:49Z", "archived": false, "license": "CC-BY-4.0", "latestRelease": { "tag": "v2026-06-08", "date": "2026-06-08T14:53:12Z", "url": "https://github.com/obophenotype/cell-ontology/releases/tag/v2026-06-08" }, "source": "https://api.github.com/repos/obophenotype/cell-ontology", "fetchedAt": "2026-10-25T19:10:21.195Z" }, "ols": { "portal": "OLS (EMBL-EBI)", "id": "cl", "api": "v2", "title": "Cell Ontology", "iri": "http://purl.obolibrary.org/obo/cl.owl", "versionIri": "http://purl.obolibrary.org/obo/cl/releases/2026-06-08/cl.owl", "version": "2026-06-08", "releaseDate": "2026-06-08", "terms": 19167, "properties": 473, "individuals": 217, "importsFrom": [ "bfo", "bspo", "chebi", "cob", "dc", "dcterms", "go", "iao", "ncbitaxon", "oio", "omo", "owl", "pato", "pcl", "pr", "rdfs", "ro", "skos", "so", "stato", "uberon" ], "exportsTo": [ "ado", "aeo", "aism", "amphx", "bcgo", "bco", "bmont", "caro", "ccf", "ceph", "chmo", "cido", "clo", "clyh", "cmpo", "cob", "colao", "covoc", "cteno", "dideo", "doid", "dpo", "ecao", "eco", "ecocore", "efo", "ehdaa2", "enm", "eupath", "fbbt", "flopo", "foodon", "fovt", "fypo", "genepio", "geno", "go", "gsso", "hcao", "hp", "hra", "ico", "ido", "idocovid19", "idomal", "ino", "lepao", "maxo", "mco", "mfmo", "micro", "mondo", "mp", "msio", "ngbo", "oba", "obcs", "obi", "obib", "ohmi", "ohpi", "omiabis", "one", "ons", "ontoneo", "opl", "opmi", "ornaseq", "pain", "pato", "pbpko", "pcl", "phipo", "planp", "poro", "pr", "prefer", "pride", "psdo", "rbo", "ro", "slso", "stato", "tao", "txpo", "uberon", "upheno", "vbo", "vo", "vsao", "wbphenotype", "wikipathways", "xpo" ], "languages": [ "en" ], "loaded": "2026-10-25T00:08:08.433001783", "sourceFileTimestamp": "Sun Oct 25 00:08:02 UTC 2026", "obsolete": false, "status": "LOADED", "page": "https://www.ebi.ac.uk/ols4/ontologies/cl", "source": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/cl", "fetchedAt": "2026-10-25T19:10:20.889Z" }, "obo": { "id": "cl", "status": "active", "domain": "anatomy and development", "license": "CC BY 4.0", "usages": [ { "user": "https://biccn.org/", "type": "annotation", "description": "The BICCN created a high-resolution atlas of cell types in the primary motor based on single cell transcriptomics. These cell types are represented in the brain data standards ontology which anchors to cell types in the cell ontology." }, { "user": "https://hubmapconsortium.org/", "type": "annotation", "description": "HuBMAP develops tools to create an open, global atlas of the human body at the cellular level. The Cell Ontology is used in annotating cell types in the tools developed." }, { "user": "https://cellxgene.cziscience.com/", "type": "annotation", "description": "The single-cell transcriptomics platform CZ CELLxGENE uses CL to annotate all cell types. All datasets on CellXGene are annotated according to a standard schema that specifies the use of CL to record Cell Type." }, { "user": "https://www.humancellatlas.org/", "type": "annotation", "description": "The Human Cell Atlas (HCA) is an international group of researchers using a combination of these new technologies to create cellular reference maps. The HCA use CL to annotate cells in their reference maps." }, { "user": "https://www.ebi.ac.uk/gxa/home", "type": "annotation", "description": "The EBI single cell expression atlas is an extension to EBI expression atlas that displays gene expression in single cells. Cell types in the single cell expression atlas linked with terms from the Cell Ontology." }, { "user": "https://www.encodeproject.org/", "type": "annotation", "description": "The National Human Genome Research Institute (NHGRI) launched a public research consortium named ENCODE, the Encyclopedia Of DNA Elements, in September 2003, to carry out a project to identify all functional elements in the human genome sequence. The ENCODE DCC uses Uberon to annotate samples" }, { "user": "http://fantom5-collaboration.gsc.riken.jp/", "type": "annotation", "description": "FANTOM5 is using Uberon and CL to annotate samples allowing for transcriptome analyses with cell-type and tissue-level specificity." } ], "source": "https://obofoundry.org/registry/ontologies.jsonld", "fetchedAt": "2026-10-25T19:10:17.692Z" }, "bioportal": null, "citations": [ { "doi": "10.1186/s13326-016-0088-7", "count": 361, "source": "https://api.crossref.org/works/10.1186%2Fs13326-016-0088-7", "fetchedAt": "2026-10-25T19:10:20.769Z" } ], "git": { "commit": "ba92ab51d633d0a131cef1ae96848ff9006a9c22", "ref": "master", "headTag": null, "latestTag": { "name": "v2026-06-08", "commit": "8e7c8d7d24b59691cb3c7bbe059cbc4b6ec3d1ab", "url": "https://github.com/obophenotype/cell-ontology/releases/tag/v2026-06-08" }, "tagCount": 78, "tagDates": [ "2015-08-08", "2015-10-29", "2016-02-01", "2016-09-02", "2016-11-23", "2017-04-14", "2017-07-29", "2017-12-11", "2018-07-07", "2019-04-05", "2019-04-30", "2019-07-16", "2019-08-12", "2020-01-06", "2020-03-02", "2020-05-20", "2020-05-21", "2020-10-02", "2020-10-19", "2020-10-20", "2020-11-11", "2021-01-22", "2021-02-01", "2021-03-05", "2021-04-22", "2021-06-21", "2021-06-28", "2021-06-29", "2021-08-06", "2021-08-10", "2021-09-09", "2021-11-23", "2021-11-25", "2021-12-07", "2021-12-16", "2022-01-05", "2022-01-09", "2022-02-16", "2022-06-15", "2022-06-18", "2022-08-16", "2022-09-15", "2022-10-28", "2022-11-25", "2022-12-15", "2023-01-09", "2023-02-15", "2023-02-19", "2023-03-21", "2023-04-20", "2023-05-22", "2023-06-22", "2023-07-20", "2023-08-24", "2023-09-21", "2023-10-19", "2023-12-05", "2024-01-04", "2024-02-13", "2024-04-05", "2024-05-15", "2024-07-10", "2024-08-16", "2024-09-26", "2025-01-08", "2025-02-13", "2025-04-10", "2025-06-20", "2025-07-30", "2025-10-16", "2025-11-04", "2025-11-25", "2025-11-27", "2025-12-17", "2026-03-17", "2026-03-26", "2026-06-08" ], "url": "https://github.com/obophenotype/cell-ontology/tree/ba92ab51d633d0a131cef1ae96848ff9006a9c22", "source": "https://github.com/obophenotype/cell-ontology.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:20.854Z" }, "tib": null, "dashboard": { "ns": "cl", "checks": { "FP01 Open": "PASS", "FP02 Common Format": "PASS", "FP03 URIs": "PASS", "FP04 Versioning": "PASS", "FP05 Scope": "PASS", "FP06 Textual Definitions": "WARN", "FP07 Relations": "INFO", "FP08 Documented": "PASS", "FP09 Plurality of Users": "PASS", "FP11 Locus of Authority": "PASS", "FP12 Naming Conventions": "PASS", "FP16 Maintenance": "PASS", "FP20 Responsiveness": "PASS", "ROBOT Report": "WARN" }, "robot": { "ERROR": 0, "INFO": 6, "WARN": 109 }, "consistent": true, "unsatisfiable": 0, "classes": 5248, "axioms": 39422, "owl2dl": true, "reusedPct": 34.08, "usedBy": [ "aism", "amphx", "clo", "clyh", "cteno", "dideo", "doid", "dpo", "fbbt", "fypo", "gsso", "hp", "ido", "ino", "maxo", "mondo", "mp", "oba", "obi", "obib", "ohpi", "opl", "pato", "pcl", "phipo", "poro", "prefer", "ro", "txpo", "uberon", "upheno", "wbphenotype" ], "oboScore": 0.558, "summary": "WARN", "checkedVersion": "http://purl.obolibrary.org/obo/cl/releases/2026-06-08/cl-base.owl", "checkedAt": "2026-06-11T20:10:40.175Z", "page": "https://dashboard.obofoundry.org/dashboard/cl/dashboard.html", "source": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "fetchedAt": "2026-10-25T19:10:20.368Z" }, "quality": null, "oops": { "error": "fetch failed", "checkedAt": "2026-10-25T19:07:42.566Z", "source": "data/quality/cl.json" }, "releases": { "dates": [ "2023-07-20", "2023-08-24", "2023-09-21", "2023-10-19", "2023-12-05", "2024-01-04", "2024-02-13", "2024-04-08", "2024-05-15", "2024-07-10", "2024-08-16", "2024-09-26", "2025-01-08", "2025-02-13", "2025-04-10", "2025-06-20", "2025-07-30", "2025-10-16", "2025-11-04", "2025-11-27", "2025-12-17", "2026-03-17", "2026-03-26", "2026-06-08" ], "lastYear": 6, "from": "GitHub releases" }, "bioregistry": { "prefix": "cl", "name": "Cell Ontology", "mappings": { "aberowl": "CL", "agroportal": "CL", "biocontext": "CL", "biodivportal": "CL", "bioportal": "CL", "cellosaurus.resource": "CL", "fairsharing": "FAIRsharing.j9y503", "go.resource": "CL", "miriam": "cl", "n2t": "cl", "obofoundry": "cl", "ols": "cl", "ontobee": "CL", "prefixcommons": "cl", "togoid": "Cl", "wikidata.entity": "Q55118285", "wikidata.property": "P7963" }, "dependsOn": [ "go", "ncbitaxon", "omo", "pato", "pr", "ro", "uberon" ], "appearsIn": [ "clo", "ecao", "ehdaa2", "go", "mco", "pcl", "uberon", "xpo" ], "license": "CC-BY-4.0", "version": "2026-06-08", "deprecated": false, "page": "https://bioregistry.io/cl", "source": "https://bioregistry.io/api/registry/cl", "fetchedAt": "2026-10-25T19:10:20.694Z" }, "artifact": { "source": "https://release-assets.githubusercontent.com/github-production-release-asset/36889083/b2e94d4d-72d7-45ad-8d84-c0d279e1cfd8?sp=r&sv=2018-11-09&sr=b&spr=https&se=2026-10-25T20%3A00%3A27Z&rscd=attachment%3B+filename%3Dcl.owl&rsct=application%2Foctet-stream&skoid=96c2d410-5711-43a1-aedd-ab1947aa7ab0&sktid=398a6654-997b-47e9-b12b-9515b896b4de&skt=2026-10-25T19%3A00%3A02Z&ske=2026-10-25T20%3A00%3A27Z&sks=b&skv=2018-11-09&sig=iiBaWV%2BBoaXI1ye86VIKRDXhkZt8o3xRZVfSZUW%2Bvdk%3D&jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmVsZWFzZS1hc3NldHMuZ2l0aHVidXNlcmNvbnRlbnQuY29tIiwia2V5Ijoia2V5MSIsImV4cCI6MTc5Mjk1NzIyMCwibmJmIjoxNzkyOTU1NDIwLCJwYXRoIjoicmVsZWFzZWFzc2V0cHJvZHVjdGlvbi5ibG9iLmNvcmUud2luZG93cy5uZXQifQ.1lmue_Oi2d7bW8BChMxicn3UZ7cT9w4Dp0S1jHzgxyM&response-content-disposition=attachment%3B%20filename%3Dcl.owl&response-content-type=application%2Foctet-stream", "versionIri": "http://purl.obolibrary.org/obo/cl/releases/2026-06-08/cl.owl", "versionInfo": "2026-06-08", "etag": "\"0x8DEC56BAE624480\"", "contentType": "application/octet-stream", "fetchedAt": "2026-10-25T19:10:21.075Z" }, "score": 99, "gross": 99, "earned": 99, "possible": 100, "qualityApplies": true, "penalty": { "score": 0, "reason": "active (last activity 2026-10-23)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.0 years → 4 × max(0, 0.0 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "A", "fair": 48, "breakdown": { "findable": { "score": 12, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 4, "max": 4, "detail": "purl.obolibrary.org" }, { "label": "Indexed in services (F4)", "pts": 5, "max": 5, "detail": "5: OLS, BioPortal, OBO Foundry, Bioregistry, FAIRsharing" }, { "label": "Citable reference (F2)", "pts": 3, "max": 3, "detail": "doi:10.1186/s13326-016-0088-7" } ], "notes": [] }, "accessible": { "score": 12, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "download HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 3, "max": 3, "detail": "OBO Foundry, Bioregistry" } ], "notes": [] }, "interoperable": { "score": 12, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL, OBO" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL, OBO" }, { "label": "References other vocabularies (I3)", "pts": 4, "max": 4, "detail": "imports 15: bfo, bspo, chebi, cob, go, iao, ncbitaxon, omo…" } ], "notes": [] }, "reusable": { "score": 12, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "CC BY 4.0" }, { "label": "Release provenance (R1.2)", "pts": 4, "max": 4, "detail": "2026-06-08 (version IRI in the artefact)" }, { "label": "Community standards (R1.3)", "pts": 3, "max": 3, "detail": "OBO principles: 11/13 checks pass" } ], "notes": [] }, "quality": { "score": 20, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 4, "max": 4, "detail": "imports BFO, COB" }, { "label": "Standard relations (RO)", "pts": 2, "max": 2, "detail": "imports RO" }, { "label": "Logical consistency", "pts": 6, "max": 6, "detail": "consistent, 0 unsatisfiable classes (OBO Dashboard)" }, { "label": "ROBOT report: no errors", "pts": 2, "max": 2, "detail": "0 errors" }, { "label": "ROBOT report: warning density", "pts": 2, "max": 2, "detail": "109 warnings / 5248 classes = 0.02" }, { "label": "Scaled 16/16 → 20", "pts": 4, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 16, "max": 16, "steps": [ { "label": "Recency", "pts": 10, "max": 10, "detail": "2026-10-23 → 0.1 months (≤ 3 months)" }, { "label": "Release cadence (12 months)", "pts": 6, "max": 6, "detail": "6 releases (GitHub releases)" } ], "notes": [] }, "adoption": { "score": 15, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 7, "max": 7, "detail": "8 projects" }, { "label": "Reused by other ontologies", "pts": 4, "max": 4, "detail": "93: aism, amphx, clo, clyh, cteno, dideo…" }, { "label": "Community signal", "pts": 4, "max": 5, "detail": "max(stars 217 → 4, citations 361 → 4)" } ], "notes": [ "Community signal: max(stars 217 → 4, citations 361 → 4)" ] } }, "lastActivity": "2026-10-23T15:17:49Z", "adopterCount": 8, "reuseCount": 93, "importCount": 15, "registries": [ "OLS", "BioPortal", "OBO Foundry", "Bioregistry", "FAIRsharing" ], "evaluatedVersion": { "label": "2026-06-08", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/cl/releases/2026-06-08/cl.owl", "inArtefact": true, "all": [ { "label": "2026-06-08", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/cl/releases/2026-06-08/cl.owl", "inArtefact": true }, { "label": "2026-06-08", "from": "version info in the artefact", "value": "2026-06-08", "inArtefact": true }, { "label": "2026-06-08", "from": "OLS", "value": "http://purl.obolibrary.org/obo/cl/releases/2026-06-08/cl.owl" }, { "label": "v2026-06-08", "from": "latest GitHub release", "value": "https://github.com/obophenotype/cell-ontology/releases/tag/v2026-06-08" }, { "label": "v2026-06-08 + commit ba92ab5", "from": "latest release tag; master evaluated at commit", "value": "ba92ab51d633d0a131cef1ae96848ff9006a9c22", "release": "v2026-06-08" }, { "label": "commit ba92ab5", "from": "master at evaluation time", "value": "ba92ab51d633d0a131cef1ae96848ff9006a9c22" }, { "label": "file of 2026-06-08", "from": "Last-Modified of the download", "value": "2026-06-08T14:39:01.000Z" } ] }, "evaluatedAt": "2026-10-25T19:10:22.574Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "CELLxGENE", "url": "https://cellxgene.cziscience.com/", "note": "Cell type annotation standard", "source": "curated" }, { "name": "Human Cell Atlas", "url": "https://www.humancellatlas.org/", "note": "Cell type annotation", "source": "curated" }, { "name": "BICAN", "url": "https://www.portal.brain-bican.org/", "note": "Brain cell types", "source": "curated" }, { "name": "biccn.org", "url": "https://biccn.org/", "note": "The BICCN created a high-resolution atlas of cell types in the primary motor based on single cell transcriptomics. These cell types are represented in the brain data standards ontology which anchors to cell types in the cell ontology.", "source": "OBO Foundry registry" }, { "name": "hubmapconsortium.org", "url": "https://hubmapconsortium.org/", "note": "HuBMAP develops tools to create an open, global atlas of the human body at the cellular level. The Cell Ontology is used in annotating cell types in the tools developed.", "source": "OBO Foundry registry" }, { "name": "ebi.ac.uk", "url": "https://www.ebi.ac.uk/gxa/home", "note": "The EBI single cell expression atlas is an extension to EBI expression atlas that displays gene expression in single cells. Cell types in the single cell expression atlas linked with terms from the Cell Ontology.", "source": "OBO Foundry registry" }, { "name": "encodeproject.org", "url": "https://www.encodeproject.org/", "note": "The National Human Genome Research Institute (NHGRI) launched a public research consortium named ENCODE, the Encyclopedia Of DNA Elements, in September 2003, to carry out a project to identify all functional elements in the human genome sequence. The ENCODE DCC uses Uberon to annotate samples", "source": "OBO Foundry registry" }, { "name": "fantom5-collaboration.gsc.riken.jp", "url": "http://fantom5-collaboration.gsc.riken.jp/", "note": "FANTOM5 is using Uberon and CL to annotate samples allowing for transcriptome analyses with cell-type and tissue-level specificity.", "source": "OBO Foundry registry" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 100, "grade": "A", "fair": null, "version": "2026-06-08", "terms": 19167, "stars": 217, "license": "CC BY 4.0", "lastActivity": "2026-10-23T15:17:49Z", "adopters": 8, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 100, "grade": "A", "fair": 60, "version": "2026-06-08", "terms": 19167, "stars": 217, "license": "CC BY 4.0", "lastActivity": "2026-10-23T15:17:49Z", "adopters": 8, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 100, "grade": "A", "fair": 60, "version": "2026-06-08", "terms": 19167, "stars": 217, "license": "CC BY 4.0", "lastActivity": "2026-10-23T15:17:49Z", "adopters": 8, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 99, "grade": "A", "fair": 48, "version": "2026-06-08", "terms": 19167, "stars": 217, "license": "CC BY 4.0", "lastActivity": "2026-10-23T15:17:49Z", "adopters": 8, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 99, "grade": "A", "fair": 48, "version": "2026-06-08", "terms": 19167, "stars": 217, "license": "CC BY 4.0", "lastActivity": "2026-10-23T15:17:49Z", "adopters": 8, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 99, "grade": "A", "fair": 48, "version": "2026-06-08", "terms": 19167, "stars": 217, "license": "CC BY 4.0", "lastActivity": "2026-10-23T15:17:49Z", "adopters": 8, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 100 → 99 · rubric v2.2 → v3.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/cl/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "http://purl.obolibrary.org/obo/cl.owl", "neuroschema:evaluatedVersion": "http://purl.obolibrary.org/obo/cl/releases/2026-06-08/cl.owl" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://obophenotype.github.io/cell-ontology/", "prov:atTime": "2026-10-25T19:10:20.803Z" }, { "@id": "https://github.com/obophenotype/cell-ontology", "prov:atTime": "2026-10-25T19:10:21.187Z" }, { "@id": "http://purl.obolibrary.org/obo/cl.owl", "prov:atTime": "2026-10-25T19:10:21.081Z" }, { "@id": "https://release-assets.githubusercontent.com/github-production-release-asset/36889083/b2e94d4d-72d7-45ad-8d84-c0d279e1cfd8?sp=r&sv=2018-11-09&sr=b&spr=https&se=2026-10-25T20%3A00%3A27Z&rscd=attachment%3B+filename%3Dcl.owl&rsct=application%2Foctet-stream&skoid=96c2d410-5711-43a1-aedd-ab1947aa7ab0&sktid=398a6654-997b-47e9-b12b-9515b896b4de&skt=2026-10-25T19%3A00%3A02Z&ske=2026-10-25T20%3A00%3A27Z&sks=b&skv=2018-11-09&sig=iiBaWV%2BBoaXI1ye86VIKRDXhkZt8o3xRZVfSZUW%2Bvdk%3D&jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmVsZWFzZS1hc3NldHMuZ2l0aHVidXNlcmNvbnRlbnQuY29tIiwia2V5Ijoia2V5MSIsImV4cCI6MTc5Mjk1NzIyMCwibmJmIjoxNzkyOTU1NDIwLCJwYXRoIjoicmVsZWFzZWFzc2V0cHJvZHVjdGlvbi5ibG9iLmNvcmUud2luZG93cy5uZXQifQ.1lmue_Oi2d7bW8BChMxicn3UZ7cT9w4Dp0S1jHzgxyM&response-content-disposition=attachment%3B%20filename%3Dcl.owl&response-content-type=application%2Foctet-stream", "prov:atTime": "2026-10-25T19:10:21.075Z" }, { "@id": "https://github.com/obophenotype/cell-ontology.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:20.854Z" }, { "@id": "https://api.github.com/repos/obophenotype/cell-ontology", "prov:atTime": "2026-10-25T19:10:21.195Z" }, { "@id": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/cl", "prov:atTime": "2026-10-25T19:10:20.889Z" }, { "@id": "https://obofoundry.org/registry/ontologies.jsonld", "prov:atTime": "2026-10-25T19:10:17.692Z" }, { "@id": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "prov:atTime": "2026-10-25T19:10:20.368Z" }, { "@id": "https://bioregistry.io/api/registry/cl", "prov:atTime": "2026-10-25T19:10:20.694Z" }, { "@id": "https://api.crossref.org/works/10.1186%2Fs13326-016-0088-7", "prov:atTime": "2026-10-25T19:10:20.769Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:22.574Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#cl" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#cl" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#cl" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#cl" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#cl" } ] } }, { "id": "pcl", "acronym": "PCL", "name": "Provisional Cell Ontology", "category": "cells", "kind": "ontology", "description": "Holds data-driven cell types (e.g. from single-cell transcriptomics of the brain) before they are ready for the Cell Ontology, linked to their source taxonomies.", "formats": [ "OWL", "OBO" ], "species": [ "Human", "Mouse", "Marmoset" ], "maintainer": "Brain Data Standards / BICAN", "license": "CC BY 4.0", "repository": "https://github.com/obophenotype/provisional_cell_ontology", "homepage": "https://github.com/obophenotype/provisional_cell_ontology", "download": "http://purl.obolibrary.org/obo/pcl.owl", "ols": "pcl", "obo": "pcl", "publications": [], "usedBy": [ { "name": "BICAN", "url": "https://www.portal.brain-bican.org/", "note": "Transcriptomic brain cell types" } ], "tags": [ "cell types", "transcriptomics", "OBO Foundry" ], "url": "https://neuroschema.org/o/pcl/", "evaluation": { "links": { "homepage": { "url": "https://github.com/obophenotype/provisional_cell_ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:21.238Z" }, "repository": { "url": "https://github.com/obophenotype/provisional_cell_ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:21.238Z" }, "download": { "url": "http://purl.obolibrary.org/obo/pcl.owl", "code": 200, "state": "ok", "resolvedUrl": "https://release-assets.githubusercontent.com/github-production-release-asset/171558104/1c607839-65b6-412c-ba81-e01f8acbf4b6?sp=r&sv=2018-11-09&sr=b&spr=https&se=2026-10-25T19%3A50%3A44Z&rscd=attachment%3B+filename%3Dpcl.owl&rsct=application%2Foctet-stream&skoid=96c2d410-5711-43a1-aedd-ab1947aa7ab0&sktid=398a6654-997b-47e9-b12b-9515b896b4de&skt=2026-10-25T18%3A49%3A52Z&ske=2026-10-25T19%3A50%3A44Z&sks=b&skv=2018-11-09&sig=X3wUZWnxU%2F9RVZprCcR0uniPKWnGINQofFSfw0FX%2FBg%3D&jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmVsZWFzZS1hc3NldHMuZ2l0aHVidXNlcmNvbnRlbnQuY29tIiwia2V5Ijoia2V5MSIsImV4cCI6MTc5Mjk1OTAyMSwibmJmIjoxNzkyOTU1NDIxLCJwYXRoIjoicmVsZWFzZWFzc2V0cHJvZHVjdGlvbi5ibG9iLmNvcmUud2luZG93cy5uZXQifQ.kq1abANDzZPbsyeuckM8SbxqwxaBkicghwW6n9WEfNs&response-content-disposition=attachment%3B%20filename%3Dpcl.owl&response-content-type=application%2Foctet-stream", "lastModified": "2025-07-08T07:57:57.000Z", "checkedAt": "2026-10-25T19:10:21.163Z" } }, "github": { "slug": "obophenotype/provisional_cell_ontology", "stars": 12, "forks": 1, "openIssues": 19, "pushedAt": "2025-07-08T07:55:53Z", "archived": false, "license": "CC-BY-4.0", "latestRelease": { "tag": "v2025-07-08", "date": "2025-07-08T07:55:53Z", "url": "https://github.com/obophenotype/provisional_cell_ontology/releases/tag/v2025-07-08" }, "source": "https://api.github.com/repos/obophenotype/provisional_cell_ontology", "fetchedAt": "2026-10-25T19:10:21.213Z" }, "ols": { "portal": "OLS (EMBL-EBI)", "id": "pcl", "api": "v2", "title": "Provisional Cell Ontology", "iri": "http://purl.obolibrary.org/obo/pcl.owl", "versionIri": "http://purl.obolibrary.org/obo/pcl/releases/2025-07-07/pcl.owl", "version": "2025-07-07", "releaseDate": "2025-07-07", "terms": 37210, "properties": 576, "individuals": 9213, "importsFrom": [ "bfo", "bspo", "chebi", "cl", "cob", "dc", "dcterms", "go", "iao", "mod", "nbo", "ncbitaxon", "obi", "oio", "omo", "pato", "pr", "rdfs", "ro", "schemaorg_http", "semapv", "skos", "so", "stato", "uberon" ], "exportsTo": [ "cl", "hra", "phipo" ], "languages": [ "en" ], "loaded": "2026-10-25T00:11:06.866258653", "sourceFileTimestamp": "Sun Oct 25 00:10:58 UTC 2026", "obsolete": false, "status": "LOADED", "page": "https://www.ebi.ac.uk/ols4/ontologies/pcl", "source": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/pcl", "fetchedAt": "2026-10-25T19:10:21.120Z" }, "obo": { "id": "pcl", "status": "active", "domain": "phenotype", "license": "CC BY 4.0", "usages": [], "source": "https://obofoundry.org/registry/ontologies.jsonld", "fetchedAt": "2026-10-25T19:10:17.692Z" }, "bioportal": null, "citations": [], "git": { "commit": "7b166cbdc631776094e7119fbf65cfb5fef839ab", "ref": "master", "headTag": "v2025-07-08", "latestTag": { "name": "v2025-07-08", "commit": "7b166cbdc631776094e7119fbf65cfb5fef839ab", "url": "https://github.com/obophenotype/provisional_cell_ontology/releases/tag/v2025-07-08" }, "tagCount": 20, "tagDates": [ "2021-11-24", "2021-12-03", "2021-12-08", "2021-12-17", "2022-01-07", "2022-01-14", "2022-01-19", "2022-01-24", "2022-02-02", "2022-02-09", "2022-03-02", "2022-04-27", "2022-09-02", "2022-10-19", "2023-02-23", "2024-01-05", "2024-07-12", "2025-01-08", "2025-07-04", "2025-07-08" ], "url": "https://github.com/obophenotype/provisional_cell_ontology/tree/7b166cbdc631776094e7119fbf65cfb5fef839ab", "source": "https://github.com/obophenotype/provisional_cell_ontology.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:20.858Z" }, "tib": null, "dashboard": { "ns": "pcl", "checks": { "FP01 Open": "PASS", "FP02 Common Format": "PASS", "FP03 URIs": "PASS", "FP04 Versioning": "ERROR", "FP05 Scope": "PASS", "FP06 Textual Definitions": "WARN", "FP07 Relations": "INFO", "FP08 Documented": "PASS", "FP09 Plurality of Users": "ERROR", "FP11 Locus of Authority": "PASS", "FP12 Naming Conventions": "ERROR", "FP16 Maintenance": "PASS", "FP20 Responsiveness": "PASS", "ROBOT Report": "ERROR" }, "robot": { "ERROR": 1138, "INFO": 1, "WARN": 14875 }, "consistent": true, "unsatisfiable": 0, "classes": 27777, "axioms": 486086, "owl2dl": true, "reusedPct": 37.81, "usedBy": [], "oboScore": 0.352, "summary": "ERROR", "checkedVersion": "http://purl.obolibrary.org/obo/pcl/releases/2025-07-07/pcl-base.owl", "checkedAt": "2025-12-11T02:18:30.787Z", "page": "https://dashboard.obofoundry.org/dashboard/pcl/dashboard.html", "source": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "fetchedAt": "2026-10-25T19:10:20.368Z" }, "quality": null, "oops": { "error": "fetch failed", "checkedAt": "2026-10-25T19:07:53.058Z", "source": "data/quality/pcl.json" }, "releases": { "dates": [ "2021-11-25", "2021-12-03", "2021-12-09", "2021-12-17", "2022-01-07", "2022-01-14", "2022-01-19", "2022-01-24", "2022-02-02", "2022-02-09", "2022-03-02", "2022-04-28", "2022-09-06", "2022-10-19", "2023-02-23", "2024-01-05", "2024-07-11", "2025-01-08", "2025-07-04", "2025-07-07", "2025-07-08" ], "lastYear": 0, "from": "GitHub releases" }, "bioregistry": { "prefix": "pcl", "name": "Provisional Cell Ontology", "mappings": { "aberowl": "PCL", "bioportal": "PCL", "fairsharing": "FAIRsharing.bfcfd0", "obofoundry": "pcl", "ols": "pcl", "ontobee": "PCL", "wikidata.entity": "Q113014435" }, "dependsOn": [ "bfo", "chebi", "cl", "go", "nbo", "ncbitaxon", "omo", "pato", "pr", "ro", "so", "uberon" ], "appearsIn": [], "license": "CC-BY-4.0", "version": "2025-07-07", "deprecated": false, "page": "https://bioregistry.io/pcl", "source": "https://bioregistry.io/api/registry/pcl", "fetchedAt": "2026-10-25T19:10:20.766Z" }, "artifact": { "source": "https://release-assets.githubusercontent.com/github-production-release-asset/171558104/1c607839-65b6-412c-ba81-e01f8acbf4b6?sp=r&sv=2018-11-09&sr=b&spr=https&se=2026-10-25T19%3A50%3A44Z&rscd=attachment%3B+filename%3Dpcl.owl&rsct=application%2Foctet-stream&skoid=96c2d410-5711-43a1-aedd-ab1947aa7ab0&sktid=398a6654-997b-47e9-b12b-9515b896b4de&skt=2026-10-25T18%3A49%3A52Z&ske=2026-10-25T19%3A50%3A44Z&sks=b&skv=2018-11-09&sig=X3wUZWnxU%2F9RVZprCcR0uniPKWnGINQofFSfw0FX%2FBg%3D&jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmVsZWFzZS1hc3NldHMuZ2l0aHVidXNlcmNvbnRlbnQuY29tIiwia2V5Ijoia2V5MSIsImV4cCI6MTc5Mjk1OTAyMSwibmJmIjoxNzkyOTU1NDIxLCJwYXRoIjoicmVsZWFzZWFzc2V0cHJvZHVjdGlvbi5ibG9iLmNvcmUud2luZG93cy5uZXQifQ.kq1abANDzZPbsyeuckM8SbxqwxaBkicghwW6n9WEfNs&response-content-disposition=attachment%3B%20filename%3Dpcl.owl&response-content-type=application%2Foctet-stream", "versionIri": "http://purl.obolibrary.org/obo/pcl/releases/2025-07-07/pcl.owl", "versionInfo": "2025-07-07", "etag": "\"0x8DDBDF526AE039D\"", "contentType": "application/octet-stream", "fetchedAt": "2026-10-25T19:10:21.147Z" }, "score": 65, "gross": 66, "earned": 66, "possible": 100, "qualityApplies": true, "penalty": { "score": -1, "reason": "1.3 years → 4 × max(0, 1.3 − 1)", "steps": [ { "label": "Time since last activity", "pts": -1, "detail": "1.3 years → 4 × max(0, 1.3 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "C", "fair": 44, "breakdown": { "findable": { "score": 9, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 4, "max": 4, "detail": "purl.obolibrary.org" }, { "label": "Indexed in services (F4)", "pts": 5, "max": 5, "detail": "5: OLS, BioPortal, OBO Foundry, Bioregistry, FAIRsharing" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 12, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "download HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 3, "max": 3, "detail": "OBO Foundry, Bioregistry" } ], "notes": [] }, "interoperable": { "score": 12, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL, OBO" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL, OBO" }, { "label": "References other vocabularies (I3)", "pts": 4, "max": 4, "detail": "imports 20: bfo, bspo, chebi, cl, cob, go, iao, mod…" } ], "notes": [] }, "reusable": { "score": 11, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "CC BY 4.0" }, { "label": "Release provenance (R1.2)", "pts": 4, "max": 4, "detail": "2025-07-07 (version IRI in the artefact)" }, { "label": "Community standards (R1.3)", "pts": 2, "max": 3, "detail": "OBO principles: 8/13 checks pass" } ], "notes": [ "Community standards (R1.3): OBO principles: 8/13 checks pass" ] }, "quality": { "score": 15, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 4, "max": 4, "detail": "imports BFO, COB" }, { "label": "Standard relations (RO)", "pts": 2, "max": 2, "detail": "imports RO" }, { "label": "Logical consistency", "pts": 6, "max": 6, "detail": "consistent, 0 unsatisfiable classes (OBO Dashboard)" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "1138 errors" }, { "label": "ROBOT report: warning density", "pts": 0, "max": 2, "detail": "14875 warnings / 27777 classes = 0.54" }, { "label": "Scaled 12/16 → 20", "pts": 3, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "ROBOT report: no errors: 1138 errors", "ROBOT report: warning density: 14875 warnings / 27777 classes = 0.54", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 2, "max": 16, "steps": [ { "label": "Recency", "pts": 2, "max": 10, "detail": "2025-07-08 → 15.6 months (≤ 2 years)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases (GitHub releases)" } ], "notes": [ "Recency: 2025-07-08 → 15.6 months (≤ 2 years)", "Release cadence (12 months): 0 releases (GitHub releases)" ] }, "adoption": { "score": 5, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "1 project" }, { "label": "Reused by other ontologies", "pts": 2, "max": 4, "detail": "3: cl, hra, phipo" }, { "label": "Community signal", "pts": 1, "max": 5, "detail": "max(stars 12 → 1, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 1 project", "Reused by other ontologies: 3: cl, hra, phipo", "Community signal: max(stars 12 → 1, citations 0 → 0)" ] } }, "lastActivity": "2025-07-08T07:57:57.000Z", "adopterCount": 1, "reuseCount": 3, "importCount": 20, "registries": [ "OLS", "BioPortal", "OBO Foundry", "Bioregistry", "FAIRsharing" ], "evaluatedVersion": { "label": "2025-07-07", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/pcl/releases/2025-07-07/pcl.owl", "inArtefact": true, "all": [ { "label": "2025-07-07", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/pcl/releases/2025-07-07/pcl.owl", "inArtefact": true }, { "label": "2025-07-07", "from": "version info in the artefact", "value": "2025-07-07", "inArtefact": true }, { "label": "2025-07-07", "from": "OLS", "value": "http://purl.obolibrary.org/obo/pcl/releases/2025-07-07/pcl.owl" }, { "label": "v2025-07-08", "from": "latest GitHub release", "value": "https://github.com/obophenotype/provisional_cell_ontology/releases/tag/v2025-07-08" }, { "label": "v2025-07-08", "from": "git tag on the evaluated commit", "value": "7b166cbdc631776094e7119fbf65cfb5fef839ab" }, { "label": "v2025-07-08 + commit 7b166cb", "from": "latest release tag; master evaluated at commit", "value": "7b166cbdc631776094e7119fbf65cfb5fef839ab", "release": "v2025-07-08" }, { "label": "commit 7b166cb", "from": "master at evaluation time", "value": "7b166cbdc631776094e7119fbf65cfb5fef839ab" }, { "label": "file of 2025-07-08", "from": "Last-Modified of the download", "value": "2025-07-08T07:57:57.000Z" } ] }, "evaluatedAt": "2026-10-25T19:10:21.617Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "BICAN", "url": "https://www.portal.brain-bican.org/", "note": "Transcriptomic brain cell types", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 71, "grade": "B", "fair": null, "version": "2025-07-07", "terms": 37210, "stars": 12, "license": "CC BY 4.0", "lastActivity": "2025-07-08T07:57:57.000Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 73, "grade": "B", "fair": 55, "version": "2025-07-07", "terms": 37210, "stars": 12, "license": "CC BY 4.0", "lastActivity": "2025-07-08T07:57:57.000Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 72, "grade": "B", "fair": 55, "version": "2025-07-07", "terms": 37210, "stars": 12, "license": "CC BY 4.0", "lastActivity": "2025-07-08T07:57:57.000Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 65, "grade": "C", "fair": 44, "version": "2025-07-07", "terms": 37210, "stars": 12, "license": "CC BY 4.0", "lastActivity": "2025-07-08T07:57:57.000Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 65, "grade": "C", "fair": 44, "version": "2025-07-07", "terms": 37210, "stars": 12, "license": "CC BY 4.0", "lastActivity": "2025-07-08T07:57:57.000Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 56, "grade": "C", "fair": 44, "version": "2025-07-07", "terms": 37210, "stars": 12, "license": "CC BY 4.0", "lastActivity": "2025-07-08T07:57:57.000Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 65 → 56 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 72 → 65 (grade B → C) · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 73 → 72 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 71 → 73 · rubric v1.0 → v2.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/pcl/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "http://purl.obolibrary.org/obo/pcl.owl", "neuroschema:evaluatedVersion": "http://purl.obolibrary.org/obo/pcl/releases/2025-07-07/pcl.owl" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://github.com/obophenotype/provisional_cell_ontology", "prov:atTime": "2026-10-25T19:10:21.238Z" }, { "@id": "https://github.com/obophenotype/provisional_cell_ontology", "prov:atTime": "2026-10-25T19:10:21.238Z" }, { "@id": "http://purl.obolibrary.org/obo/pcl.owl", "prov:atTime": "2026-10-25T19:10:21.163Z" }, { "@id": "https://release-assets.githubusercontent.com/github-production-release-asset/171558104/1c607839-65b6-412c-ba81-e01f8acbf4b6?sp=r&sv=2018-11-09&sr=b&spr=https&se=2026-10-25T19%3A50%3A44Z&rscd=attachment%3B+filename%3Dpcl.owl&rsct=application%2Foctet-stream&skoid=96c2d410-5711-43a1-aedd-ab1947aa7ab0&sktid=398a6654-997b-47e9-b12b-9515b896b4de&skt=2026-10-25T18%3A49%3A52Z&ske=2026-10-25T19%3A50%3A44Z&sks=b&skv=2018-11-09&sig=X3wUZWnxU%2F9RVZprCcR0uniPKWnGINQofFSfw0FX%2FBg%3D&jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmVsZWFzZS1hc3NldHMuZ2l0aHVidXNlcmNvbnRlbnQuY29tIiwia2V5Ijoia2V5MSIsImV4cCI6MTc5Mjk1OTAyMSwibmJmIjoxNzkyOTU1NDIxLCJwYXRoIjoicmVsZWFzZWFzc2V0cHJvZHVjdGlvbi5ibG9iLmNvcmUud2luZG93cy5uZXQifQ.kq1abANDzZPbsyeuckM8SbxqwxaBkicghwW6n9WEfNs&response-content-disposition=attachment%3B%20filename%3Dpcl.owl&response-content-type=application%2Foctet-stream", "prov:atTime": "2026-10-25T19:10:21.147Z" }, { "@id": "https://github.com/obophenotype/provisional_cell_ontology.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:20.858Z" }, { "@id": "https://api.github.com/repos/obophenotype/provisional_cell_ontology", "prov:atTime": "2026-10-25T19:10:21.213Z" }, { "@id": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/pcl", "prov:atTime": "2026-10-25T19:10:21.120Z" }, { "@id": "https://obofoundry.org/registry/ontologies.jsonld", "prov:atTime": "2026-10-25T19:10:17.692Z" }, { "@id": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "prov:atTime": "2026-10-25T19:10:20.368Z" }, { "@id": "https://bioregistry.io/api/registry/pcl", "prov:atTime": "2026-10-25T19:10:20.766Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:21.617Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#pcl" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#pcl" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#pcl" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#pcl" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#pcl" } ] } }, { "id": "npo", "acronym": "NPO", "name": "Neuron Phenotype Ontology", "category": "cells", "kind": "ontology", "description": "Defines neuron types by combinations of phenotypes (location, morphology, molecular markers, electrophysiology, projections). Part of the NIF Ontology.", "formats": [ "OWL", "Turtle" ], "species": [ "Multi-species" ], "maintainer": "SciCrunch / FDI Lab", "homepage": "https://github.com/SciCrunch/NIF-Ontology", "repository": "https://github.com/SciCrunch/NIF-Ontology", "publications": [ { "title": "The Neuron Phenotype Ontology: A FAIR Approach to Proposing and Classifying Neuronal Types", "doi": "10.1007/s12021-022-09566-7", "year": 2022 } ], "usedBy": [ { "name": "SPARC", "url": "https://sparc.science/", "note": "Neuron populations in connectivity models" } ], "tags": [ "neuron types", "phenotypes" ], "url": "https://neuroschema.org/o/npo/", "evaluation": { "links": { "homepage": { "url": "https://github.com/SciCrunch/NIF-Ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:21.567Z" }, "repository": { "url": "https://github.com/SciCrunch/NIF-Ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:21.567Z" }, "download": null }, "github": { "slug": "SciCrunch/NIF-Ontology", "stars": 64, "forks": 17, "openIssues": 153, "pushedAt": "2026-07-24T22:04:16Z", "archived": false, "license": "CC-BY-4.0", "latestRelease": { "tag": "v3.1", "date": "2018-01-15T14:40:35Z", "url": "https://github.com/SciCrunch/NIF-Ontology/releases/tag/v3.1" }, "source": "https://api.github.com/repos/SciCrunch/NIF-Ontology", "fetchedAt": "2026-10-25T19:10:21.784Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [ { "doi": "10.1007/s12021-022-09566-7", "count": 8, "source": "https://api.crossref.org/works/10.1007%2Fs12021-022-09566-7", "fetchedAt": "2026-10-25T19:10:21.305Z" } ], "git": { "commit": "e0b6941924a5dabcd62c5cab879e9b8c64571e4a", "ref": "master", "headTag": null, "latestTag": { "name": "20191210025914-4ca48f8", "commit": "4ca48f8d513c1622595c780e437cbef5fab3e061", "url": "https://github.com/SciCrunch/NIF-Ontology/releases/tag/20191210025914-4ca48f8" }, "tagCount": 44, "tagDates": [ "2023-01-17", "2023-01-23", "2023-04-12", "2023-04-29", "2023-05-05", "2023-07-28", "2023-07-31", "2023-08-04", "2024-01-30", "2024-03-05", "2024-03-26", "2024-08-02", "2024-08-27", "2024-08-28", "2024-08-29", "2024-09-21", "2025-05-02", "2025-09-14", "2026-01-10", "2026-01-16", "2026-01-30", "2026-02-11", "2026-06-23" ], "url": "https://github.com/SciCrunch/NIF-Ontology/tree/e0b6941924a5dabcd62c5cab879e9b8c64571e4a", "source": "https://github.com/SciCrunch/NIF-Ontology.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:21.311Z" }, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [ "2016-07-08", "2017-09-10", "2017-09-12", "2017-10-16", "2018-01-15" ], "lastYear": 0, "from": "GitHub releases" }, "bioregistry": null, "artifact": null, "score": 39, "gross": 39, "earned": 39, "possible": 100, "qualityApplies": true, "penalty": { "score": 0, "reason": "active (last activity 2026-07-24)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.3 years → 4 × max(0, 0.3 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 27, "breakdown": { "findable": { "score": 3, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 3, "max": 3, "detail": "doi:10.1007/s12021-022-09566-7" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "repository HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL, Turtle" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL, Turtle" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 7, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "CC-BY-4.0" }, { "label": "Release provenance (R1.2)", "pts": 2, "max": 4, "detail": "v3.1 (latest GitHub release); not declared inside the artefact" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Release provenance (R1.2): v3.1 (latest GitHub release); not declared inside the artefact", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 0, "max": 4, "detail": "no BFO/COB/DOLCE import found" }, { "label": "Standard relations (RO)", "pts": 0, "max": 2, "detail": "does not import the Relation Ontology" }, { "label": "Logical consistency", "pts": 0, "max": 6, "detail": "never checked by a reasoner" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "ROBOT report: warning density", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "Scaled 0/16 → 20", "pts": 0, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "Upper-ontology alignment: no BFO/COB/DOLCE import found", "Standard relations (RO): does not import the Relation Ontology", "Logical consistency: never checked by a reasoner", "ROBOT report: no errors: no ROBOT report available", "ROBOT report: warning density: no ROBOT report available", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 8, "max": 16, "steps": [ { "label": "Recency", "pts": 8, "max": 10, "detail": "2026-07-24 → 3.1 months (≤ 6 months)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases (GitHub releases)" } ], "notes": [ "Recency: 2026-07-24 → 3.1 months (≤ 6 months)", "Release cadence (12 months): 0 releases (GitHub releases)" ] }, "adoption": { "score": 4, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "1 project" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 2, "max": 5, "detail": "max(stars 64 → 2, citations 8 → 0)" } ], "notes": [ "Documented adopting projects: 1 project", "Reused by other ontologies: 0", "Community signal: max(stars 64 → 2, citations 8 → 0)" ] } }, "lastActivity": "2026-07-24T22:04:16Z", "adopterCount": 1, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": { "label": "v3.1", "from": "latest GitHub release", "value": "https://github.com/SciCrunch/NIF-Ontology/releases/tag/v3.1", "all": [ { "label": "v3.1", "from": "latest GitHub release", "value": "https://github.com/SciCrunch/NIF-Ontology/releases/tag/v3.1" }, { "label": "20191210025914-4ca48f8 + commit e0b6941", "from": "latest release tag; master evaluated at commit", "value": "e0b6941924a5dabcd62c5cab879e9b8c64571e4a", "release": "20191210025914-4ca48f8" }, { "label": "commit e0b6941", "from": "master at evaluation time", "value": "e0b6941924a5dabcd62c5cab879e9b8c64571e4a" } ] }, "evaluatedAt": "2026-10-25T19:10:22.274Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "SPARC", "url": "https://sparc.science/", "note": "Neuron populations in connectivity models", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 83, "grade": "A", "fair": null, "version": null, "terms": null, "stars": 64, "license": "CC-BY-4.0", "lastActivity": "2026-07-24T22:04:16Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 76, "grade": "B", "fair": 45, "version": "commit e0b6941", "terms": null, "stars": 64, "license": "CC-BY-4.0", "lastActivity": "2026-07-24T22:04:16Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 81, "grade": "A", "fair": 50, "version": "v3.1", "terms": null, "stars": 64, "license": "CC-BY-4.0", "lastActivity": "2026-07-24T22:04:16Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 44, "grade": "D", "fair": 27, "version": "20191210025914-4ca48f8 + commit e0b6941", "terms": null, "stars": 64, "license": "CC-BY-4.0", "lastActivity": "2026-07-24T22:04:16Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 39, "grade": "E", "fair": 27, "version": "v3.1", "terms": null, "stars": 64, "license": "CC-BY-4.0", "lastActivity": "2026-07-24T22:04:16Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 41, "grade": "D", "fair": 24, "version": "20191210025914-4ca48f8 + commit e0b6941", "terms": null, "stars": 64, "license": "CC-BY-4.0", "lastActivity": "2026-07-24T22:04:16Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 39 → 41 (grade E → D) · rubric v3.0 → v3.3" }, { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Evaluated version: v3.1 → 20191210025914-4ca48f8 + commit e0b6941" }, { "at": "2026-10-25T19:10:30.278Z", "runId": "2026-10-25T19-10-16Z", "what": "Score: 44 → 39 (grade D → E)" }, { "at": "2026-10-25T19:10:30.278Z", "runId": "2026-10-25T19-10-16Z", "what": "Evaluated version: 20191210025914-4ca48f8 + commit e0b6941 → v3.1" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 81 → 44 (grade A → D) · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Evaluated version: v3.1 → 20191210025914-4ca48f8 + commit e0b6941" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 76 → 81 (grade B → A) · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Evaluated version: commit e0b6941 → v3.1" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 83 → 76 (grade A → B) · rubric v1.0 → v2.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Evaluated version: — → commit e0b6941" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/npo/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://github.com/SciCrunch/NIF-Ontology", "neuroschema:evaluatedVersion": "https://github.com/SciCrunch/NIF-Ontology/releases/tag/v3.1" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://github.com/SciCrunch/NIF-Ontology", "prov:atTime": "2026-10-25T19:10:21.567Z" }, { "@id": "https://github.com/SciCrunch/NIF-Ontology", "prov:atTime": "2026-10-25T19:10:21.567Z" }, { "@id": "https://github.com/SciCrunch/NIF-Ontology.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:21.311Z" }, { "@id": "https://api.github.com/repos/SciCrunch/NIF-Ontology", "prov:atTime": "2026-10-25T19:10:21.784Z" }, { "@id": "https://api.crossref.org/works/10.1007%2Fs12021-022-09566-7", "prov:atTime": "2026-10-25T19:10:21.305Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:22.274Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#npo" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#npo" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#npo" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#npo" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#npo" } ] } }, { "id": "cas", "acronym": "CAS", "name": "Cell Annotation Schema", "category": "cells", "kind": "schema", "description": "A JSON Schema for recording cell type annotations of single-cell datasets, including evidence, marker genes and links to ontology terms.", "formats": [ "JSON Schema" ], "species": [ "Multi-species" ], "maintainer": "Cell Annotation Schema community", "homepage": "https://github.com/cellannotation/cell-annotation-schema", "repository": "https://github.com/cellannotation/cell-annotation-schema", "publications": [], "usedBy": [ { "name": "BICAN", "url": "https://www.portal.brain-bican.org/", "note": "Cell type taxonomy annotation" } ], "tags": [ "cell types", "annotation", "single-cell" ], "tools": [ { "name": "Taxonomy Development Tools", "url": "https://github.com/brain-bican/taxonomy-development-tools", "note": "Build and edit Cell Annotation Schema taxonomies" } ], "url": "https://neuroschema.org/o/cas/", "evaluation": { "links": { "homepage": { "url": "https://github.com/cellannotation/cell-annotation-schema", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:21.773Z" }, "repository": { "url": "https://github.com/cellannotation/cell-annotation-schema", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:21.773Z" }, "download": null }, "github": { "slug": "cellannotation/cell-annotation-schema", "stars": 16, "forks": 2, "openIssues": 23, "pushedAt": "2025-06-16T20:31:57Z", "archived": false, "license": null, "latestRelease": { "tag": "v1.1.0", "date": "2025-03-26T09:44:07Z", "url": "https://github.com/cellannotation/cell-annotation-schema/releases/tag/v1.1.0" }, "source": "https://api.github.com/repos/cellannotation/cell-annotation-schema", "fetchedAt": "2026-10-25T19:10:21.927Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [], "git": { "commit": "ffedb1b6fcd0eca8cf1b83ffbd1421ce96d10b34", "ref": "main", "headTag": null, "latestTag": { "name": "v1.1.0", "commit": "ab99065dde2511e45ad438a7afc5419214fc93d7", "url": "https://github.com/cellannotation/cell-annotation-schema/releases/tag/v1.1.0" }, "tagCount": 5, "tagDates": [], "url": "https://github.com/cellannotation/cell-annotation-schema/tree/ffedb1b6fcd0eca8cf1b83ffbd1421ce96d10b34", "source": "https://github.com/cellannotation/cell-annotation-schema.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:21.484Z" }, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [ "2023-10-20", "2023-12-14", "2024-04-02", "2024-07-05", "2025-03-26" ], "lastYear": 0, "from": "GitHub releases" }, "bioregistry": null, "artifact": null, "score": 25, "gross": 26, "earned": 21, "possible": 80, "qualityApplies": false, "penalty": { "score": -1, "reason": "1.4 years → 4 × max(0, 1.4 − 1)", "steps": [ { "label": "Time since last activity", "pts": -1, "detail": "1.4 years → 4 × max(0, 1.4 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 16, "breakdown": { "findable": { "score": 0, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere", "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "repository HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 5, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "JSON Schema" }, { "label": "Semantic-web IRIs (I2)", "pts": 0, "max": 3, "detail": "no RDF/OWL/JSON-LD representation" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "Semantic-web IRIs (I2): no RDF/OWL/JSON-LD representation", "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 2, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 2, "max": 4, "detail": "v1.1.0 (latest GitHub release); not declared inside the artefact" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): v1.1.0 (latest GitHub release); not declared inside the artefact", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Not applicable", "pts": 0, "max": 0, "detail": "schema without an OWL/OBO/RDF artefact; total scaled from 80 to 100" } ], "notes": [], "applicable": false }, "maintenance": { "score": 2, "max": 16, "steps": [ { "label": "Recency", "pts": 2, "max": 10, "detail": "2025-06-16 → 16.3 months (≤ 2 years)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases (GitHub releases)" } ], "notes": [ "Recency: 2025-06-16 → 16.3 months (≤ 2 years)", "Release cadence (12 months): 0 releases (GitHub releases)" ] }, "adoption": { "score": 3, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "1 project" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 1, "max": 5, "detail": "max(stars 16 → 1, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 1 project", "Reused by other ontologies: 0", "Community signal: max(stars 16 → 1, citations 0 → 0)" ] } }, "lastActivity": "2025-06-16T20:31:57Z", "adopterCount": 1, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": { "label": "v1.1.0", "from": "latest GitHub release", "value": "https://github.com/cellannotation/cell-annotation-schema/releases/tag/v1.1.0", "all": [ { "label": "v1.1.0", "from": "latest GitHub release", "value": "https://github.com/cellannotation/cell-annotation-schema/releases/tag/v1.1.0" }, { "label": "v1.1.0 + commit ffedb1b", "from": "latest release tag; main evaluated at commit", "value": "ffedb1b6fcd0eca8cf1b83ffbd1421ce96d10b34", "release": "v1.1.0" }, { "label": "commit ffedb1b", "from": "main at evaluation time", "value": "ffedb1b6fcd0eca8cf1b83ffbd1421ce96d10b34" } ] }, "evaluatedAt": "2026-10-25T19:10:22.335Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "BICAN", "url": "https://www.portal.brain-bican.org/", "note": "Cell type taxonomy annotation", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 51, "grade": "C", "fair": null, "version": null, "terms": null, "stars": 16, "license": null, "lastActivity": "2025-06-16T20:31:57Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 43, "grade": "D", "fair": 25, "version": "commit ffedb1b", "terms": null, "stars": 16, "license": null, "lastActivity": "2025-06-16T20:31:57Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 47, "grade": "D", "fair": 30, "version": "v1.1.0", "terms": null, "stars": 16, "license": null, "lastActivity": "2025-06-16T20:31:57Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 25, "grade": "D", "fair": 16, "version": "v1.1.0 + commit ffedb1b", "terms": null, "stars": 16, "license": null, "lastActivity": "2025-06-16T20:31:57Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 25, "grade": "E", "fair": 16, "version": "v1.1.0", "terms": null, "stars": 16, "license": null, "lastActivity": "2025-06-16T20:31:57Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 22, "grade": "E", "fair": 13, "version": "v1.1.0 + commit ffedb1b", "terms": null, "stars": 16, "license": null, "lastActivity": "2025-06-16T20:31:57Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 25 → 22 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Evaluated version: v1.1.0 → v1.1.0 + commit ffedb1b" }, { "at": "2026-10-25T19:10:30.278Z", "runId": "2026-10-25T19-10-16Z", "what": "Evaluated version: v1.1.0 + commit ffedb1b → v1.1.0" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 47 → 25 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Evaluated version: v1.1.0 → v1.1.0 + commit ffedb1b" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 43 → 47 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Evaluated version: commit ffedb1b → v1.1.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 51 → 43 (grade C → D) · rubric v1.0 → v2.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Evaluated version: — → commit ffedb1b" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/cas/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://github.com/cellannotation/cell-annotation-schema", "neuroschema:evaluatedVersion": "https://github.com/cellannotation/cell-annotation-schema/releases/tag/v1.1.0" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://github.com/cellannotation/cell-annotation-schema", "prov:atTime": "2026-10-25T19:10:21.773Z" }, { "@id": "https://github.com/cellannotation/cell-annotation-schema", "prov:atTime": "2026-10-25T19:10:21.773Z" }, { "@id": "https://github.com/cellannotation/cell-annotation-schema.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:21.484Z" }, { "@id": "https://api.github.com/repos/cellannotation/cell-annotation-schema", "prov:atTime": "2026-10-25T19:10:21.927Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:22.335Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#cas" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#cas" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#cas" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#cas" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#cas" } ] } }, { "id": "ccn", "acronym": "CCN", "name": "Common Cell Type Nomenclature", "category": "cells", "kind": "vocabulary", "description": "A convention for naming and identifying data-driven cell types and taxonomies so that they can be compared and tracked across studies.", "formats": [ "Convention" ], "species": [ "Mammals" ], "maintainer": "Allen Institute", "homepage": "https://doi.org/10.7554/eLife.59928", "publications": [ { "title": "Common cell type nomenclature for the mammalian brain", "doi": "10.7554/eLife.59928", "year": 2020 } ], "usedBy": [ { "name": "Allen Brain Cell Atlas", "url": "https://portal.brain-map.org/atlases-and-data/bkp/abc-atlas", "note": "Taxonomy identifiers" } ], "tags": [ "cell types", "nomenclature", "taxonomy" ], "url": "https://neuroschema.org/o/ccn/", "evaluation": { "links": { "homepage": { "url": "https://doi.org/10.7554/eLife.59928", "code": 406, "state": "blocked", "resolvedUrl": "https://elifesciences.org/articles/59928", "checkedAt": "2026-10-25T19:10:22.330Z" }, "repository": null, "download": null }, "github": null, "ols": null, "obo": null, "bioportal": null, "citations": [ { "doi": "10.7554/eLife.59928", "count": 81, "source": "https://api.crossref.org/works/10.7554%2FeLife.59928", "fetchedAt": "2026-10-25T19:10:21.696Z" } ], "git": null, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [], "lastYear": 0, "from": null }, "bioregistry": null, "artifact": null, "score": 8, "gross": 13, "earned": 10, "possible": 80, "qualityApplies": false, "penalty": { "score": -5, "reason": "no commits, releases or dated files found", "steps": [ { "label": "No activity evidence", "pts": -5, "detail": "no commits, releases or dated files found" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 6, "breakdown": { "findable": { "score": 3, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 3, "max": 3, "detail": "doi:10.7554/eLife.59928" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere" ] }, "accessible": { "score": 3, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 406" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 0, "max": 6, "detail": "no download or repository listed" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Artefact retrievable over HTTP(S) (A1): no download or repository listed", "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 0, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 0, "max": 5, "detail": "none of: Convention" }, { "label": "Semantic-web IRIs (I2)", "pts": 0, "max": 3, "detail": "no RDF/OWL/JSON-LD representation" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "Formal machine-readable format (I1): none of: Convention", "Semantic-web IRIs (I2): no RDF/OWL/JSON-LD representation", "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 0, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 0, "max": 4, "detail": "no version in artefact, registry or release tags" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): no version in artefact, registry or release tags", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Not applicable", "pts": 0, "max": 0, "detail": "vocabulary without an OWL/OBO/RDF artefact; total scaled from 80 to 100" } ], "notes": [], "applicable": false }, "maintenance": { "score": 0, "max": 16, "steps": [ { "label": "Recency", "pts": 0, "max": 10, "detail": "no activity evidence" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases" } ], "notes": [ "Recency: no activity evidence", "Release cadence (12 months): 0 releases" ] }, "adoption": { "score": 4, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "1 project" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 2, "max": 5, "detail": "max(stars 0 → 0, citations 81 → 2)" } ], "notes": [ "Documented adopting projects: 1 project", "Reused by other ontologies: 0", "Community signal: max(stars 0 → 0, citations 81 → 2)" ] } }, "lastActivity": null, "adopterCount": 1, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": null, "evaluatedAt": "2026-10-25T19:10:22.330Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "Allen Brain Cell Atlas", "url": "https://portal.brain-map.org/atlases-and-data/bkp/abc-atlas", "note": "Taxonomy identifiers", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 17, "grade": "D", "fair": null, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "blocked" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 18, "grade": "D", "fair": 10, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "blocked" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 13, "grade": "D", "fair": 10, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "blocked" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 8, "grade": "D", "fair": 6, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "blocked" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 8, "grade": "E", "fair": 6, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "blocked" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 8, "grade": "E", "fair": 6, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "blocked" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 13 → 8 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 18 → 13 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 17 → 18 · rubric v1.0 → v2.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/ccn/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://doi.org/10.7554/eLife.59928", "neuroschema:evaluatedVersion": null }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://doi.org/10.7554/eLife.59928", "prov:atTime": "2026-10-25T19:10:22.330Z" }, { "@id": "https://api.crossref.org/works/10.7554%2FeLife.59928", "prov:atTime": "2026-10-25T19:10:21.696Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:22.330Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#ccn" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#ccn" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#ccn" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#ccn" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#ccn" } ] } }, { "id": "nbo", "acronym": "NBO", "name": "Neuro Behavior Ontology", "category": "behavior", "kind": "ontology", "description": "Covers behavioral processes and phenotypes, such as learning, motor and social behavior, for annotating animal and human behavior.", "formats": [ "OWL", "OBO" ], "species": [ "Multi-species" ], "maintainer": "OBO behavior community", "license": "CC BY 3.0", "homepage": "https://github.com/obo-behavior/behavior-ontology", "repository": "https://github.com/obo-behavior/behavior-ontology", "download": "http://purl.obolibrary.org/obo/nbo.owl", "ols": "nbo", "obo": "nbo", "publications": [], "usedBy": [], "tags": [ "behavior", "OBO Foundry" ], "url": "https://neuroschema.org/o/nbo/", "evaluation": { "links": { "homepage": { "url": "https://github.com/obo-behavior/behavior-ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:22.714Z" }, "repository": { "url": "https://github.com/obo-behavior/behavior-ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:22.714Z" }, "download": { "url": "http://purl.obolibrary.org/obo/nbo.owl", "code": 200, "state": "ok", "resolvedUrl": "https://raw.githubusercontent.com/obo-behavior/behavior-ontology/master/nbo.owl", "checkedAt": "2026-10-25T19:10:23.226Z" } }, "github": { "slug": "obo-behavior/behavior-ontology", "stars": 28, "forks": 16, "openIssues": 22, "pushedAt": "2026-01-14T15:04:23Z", "archived": false, "license": null, "latestRelease": { "tag": "v2023-07-04", "date": "2023-07-04T14:04:40Z", "url": "https://github.com/obo-behavior/behavior-ontology/releases/tag/v2023-07-04" }, "source": "https://api.github.com/repos/obo-behavior/behavior-ontology", "fetchedAt": "2026-10-25T19:10:22.792Z" }, "ols": { "portal": "OLS (EMBL-EBI)", "id": "nbo", "api": "v2", "title": "Neuro Behavior Ontology", "iri": "http://purl.obolibrary.org/obo/nbo.owl", "versionIri": "http://purl.obolibrary.org/obo/nbo/releases/2023-07-04/nbo.owl", "version": "2023-07-04", "releaseDate": "2023-07-04", "terms": 4546, "properties": 326, "individuals": 0, "importsFrom": [ "bfo", "bspo", "chebi", "cob", "dc", "dcterms", "go", "iao", "ncbitaxon", "oio", "owl", "pato", "rdfs", "ro", "skos", "uberon" ], "exportsTo": [ "ado", "aism", "apollo_sv", "bcgo", "cpont", "dpo", "ecao", "ecocore", "ecto", "epio", "flopo", "fovt", "genepio", "go", "gsso", "hcao", "hp", "maxo", "mf", "mfoem", "mfomd", "mondo", "mp", "oba", "ohd", "pato", "pcl", "planp", "prefer", "rbo", "scdo", "uberon", "upheno", "xpo" ], "languages": [ "en" ], "loaded": "2026-10-25T00:10:07.072482647", "sourceFileTimestamp": "Sun Oct 25 00:10:04 UTC 2026", "obsolete": false, "status": "LOADED", "page": "https://www.ebi.ac.uk/ols4/ontologies/nbo", "source": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/nbo", "fetchedAt": "2026-10-25T19:10:22.485Z" }, "obo": { "id": "nbo", "status": "active", "domain": "biological systems", "license": "CC BY 3.0", "usages": [], "source": "https://obofoundry.org/registry/ontologies.jsonld", "fetchedAt": "2026-10-25T19:10:17.692Z" }, "bioportal": null, "citations": [], "git": { "commit": "2a03b1e49e13a12dbf7565955f63a8f86072791d", "ref": "master", "headTag": null, "latestTag": { "name": "v2023-07-04", "commit": "12f5ac22a6b4902e8f48b9f93cd39a9ed73221ac", "url": "https://github.com/obo-behavior/behavior-ontology/releases/tag/v2023-07-04" }, "tagCount": 11, "tagDates": [ "2018-02-02", "2018-05-10", "2018-05-11", "2019-09-09", "2020-01-23", "2020-02-10", "2021-02-15", "2023-02-19", "2023-02-21", "2023-05-02", "2023-07-04" ], "url": "https://github.com/obo-behavior/behavior-ontology/tree/2a03b1e49e13a12dbf7565955f63a8f86072791d", "source": "https://github.com/obo-behavior/behavior-ontology.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:22.428Z" }, "tib": null, "dashboard": { "ns": "nbo", "checks": { "FP01 Open": "PASS", "FP02 Common Format": "PASS", "FP03 URIs": "PASS", "FP04 Versioning": "PASS", "FP05 Scope": "PASS", "FP06 Textual Definitions": "WARN", "FP07 Relations": "INFO", "FP08 Documented": "PASS", "FP09 Plurality of Users": "ERROR", "FP11 Locus of Authority": "PASS", "FP12 Naming Conventions": "PASS", "FP16 Maintenance": "WARN", "FP20 Responsiveness": "PASS", "ROBOT Report": "WARN" }, "robot": { "ERROR": 0, "INFO": 169, "WARN": 225 }, "consistent": true, "unsatisfiable": 0, "classes": 1022, "axioms": 7164, "owl2dl": true, "reusedPct": 11.99, "usedBy": [ "ado", "apollo_sv", "dpo", "ecto", "hp", "maxo", "mondo", "mp", "oba", "ohd", "planp", "uberon", "upheno", "xpo" ], "oboScore": null, "summary": "ERROR", "checkedVersion": "http://purl.obolibrary.org/obo/nbo/releases/2023-07-04/nbo-base.owl", "checkedAt": "2025-12-09T21:09:06.910Z", "page": "https://dashboard.obofoundry.org/dashboard/nbo/dashboard.html", "source": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "fetchedAt": "2026-10-25T19:10:20.368Z" }, "quality": null, "oops": { "error": "fetch failed", "checkedAt": "2026-10-25T19:08:03.550Z", "source": "data/quality/nbo.json" }, "releases": { "dates": [ "2018-02-02", "2018-05-10", "2018-05-11", "2019-09-09", "2020-01-23", "2020-02-10", "2021-02-19", "2023-02-19", "2023-02-21", "2023-05-02", "2023-07-04" ], "lastYear": 0, "from": "GitHub releases" }, "bioregistry": { "prefix": "nbo", "name": "Neuro Behavior Ontology", "mappings": { "aberowl": "NBO", "biocontext": "NBO", "bioportal": "NBO", "fairsharing": "FAIRsharing.pktgc6", "obofoundry": "nbo", "ols": "nbo", "ontobee": "NBO", "wikidata.entity": "Q81661716" }, "dependsOn": [], "appearsIn": [ "ecto", "maxo", "pcl", "scdo", "uberon" ], "license": "CC-BY-3.0", "version": "2023-07-04", "deprecated": false, "page": "https://bioregistry.io/nbo", "source": "https://bioregistry.io/api/registry/nbo", "fetchedAt": "2026-10-25T19:10:22.328Z" }, "artifact": { "source": "https://raw.githubusercontent.com/obo-behavior/behavior-ontology/master/nbo.owl", "versionIri": "http://purl.obolibrary.org/obo/nbo/releases/2023-07-04/nbo.owl", "versionInfo": "2023-07-04", "etag": "\"3339220079d7fff255549005caac1d78c11680b9150feac29782c7b9f87def3d\"", "contentType": "text/plain", "fetchedAt": "2026-10-25T19:10:22.851Z" }, "score": 74, "gross": 74, "earned": 74, "possible": 100, "qualityApplies": true, "penalty": { "score": 0, "reason": "active (last activity 2026-01-14)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.8 years → 4 × max(0, 0.8 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "B", "fair": 44, "breakdown": { "findable": { "score": 9, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 4, "max": 4, "detail": "purl.obolibrary.org" }, { "label": "Indexed in services (F4)", "pts": 5, "max": 5, "detail": "5: OLS, BioPortal, OBO Foundry, Bioregistry, FAIRsharing" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 12, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "download HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 3, "max": 3, "detail": "OBO Foundry, Bioregistry" } ], "notes": [] }, "interoperable": { "score": 12, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL, OBO" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL, OBO" }, { "label": "References other vocabularies (I3)", "pts": 4, "max": 4, "detail": "imports 10: bfo, bspo, chebi, cob, go, iao, ncbitaxon, pato…" } ], "notes": [] }, "reusable": { "score": 11, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "CC BY 3.0" }, { "label": "Release provenance (R1.2)", "pts": 4, "max": 4, "detail": "2023-07-04 (version IRI in the artefact)" }, { "label": "Community standards (R1.3)", "pts": 2, "max": 3, "detail": "OBO principles: 9/13 checks pass" } ], "notes": [ "Community standards (R1.3): OBO principles: 9/13 checks pass" ] }, "quality": { "score": 19, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 4, "max": 4, "detail": "imports BFO, COB" }, { "label": "Standard relations (RO)", "pts": 2, "max": 2, "detail": "imports RO" }, { "label": "Logical consistency", "pts": 6, "max": 6, "detail": "consistent, 0 unsatisfiable classes (OBO Dashboard)" }, { "label": "ROBOT report: no errors", "pts": 2, "max": 2, "detail": "0 errors" }, { "label": "ROBOT report: warning density", "pts": 1, "max": 2, "detail": "225 warnings / 1022 classes = 0.22" }, { "label": "Scaled 15/16 → 20", "pts": 4, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "ROBOT report: warning density: 225 warnings / 1022 classes = 0.22", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 5, "max": 16, "steps": [ { "label": "Recency", "pts": 5, "max": 10, "detail": "2026-01-14 → 9.3 months (≤ 1 year)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases (GitHub releases)" } ], "notes": [ "Recency: 2026-01-14 → 9.3 months (≤ 1 year)", "Release cadence (12 months): 0 releases (GitHub releases)" ] }, "adoption": { "score": 6, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 0, "max": 7, "detail": "0 projects" }, { "label": "Reused by other ontologies", "pts": 4, "max": 4, "detail": "34: ado, apollo_sv, dpo, ecto, hp, maxo…" }, { "label": "Community signal", "pts": 2, "max": 5, "detail": "max(stars 28 → 2, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 0 projects", "Community signal: max(stars 28 → 2, citations 0 → 0)" ] } }, "lastActivity": "2026-01-14T15:04:23Z", "adopterCount": 0, "reuseCount": 34, "importCount": 10, "registries": [ "OLS", "BioPortal", "OBO Foundry", "Bioregistry", "FAIRsharing" ], "evaluatedVersion": { "label": "2023-07-04", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/nbo/releases/2023-07-04/nbo.owl", "inArtefact": true, "all": [ { "label": "2023-07-04", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/nbo/releases/2023-07-04/nbo.owl", "inArtefact": true }, { "label": "2023-07-04", "from": "version info in the artefact", "value": "2023-07-04", "inArtefact": true }, { "label": "2023-07-04", "from": "OLS", "value": "http://purl.obolibrary.org/obo/nbo/releases/2023-07-04/nbo.owl" }, { "label": "v2023-07-04", "from": "latest GitHub release", "value": "https://github.com/obo-behavior/behavior-ontology/releases/tag/v2023-07-04" }, { "label": "v2023-07-04 + commit 2a03b1e", "from": "latest release tag; master evaluated at commit", "value": "2a03b1e49e13a12dbf7565955f63a8f86072791d", "release": "v2023-07-04" }, { "label": "commit 2a03b1e", "from": "master at evaluation time", "value": "2a03b1e49e13a12dbf7565955f63a8f86072791d" } ] }, "evaluatedAt": "2026-10-25T19:10:23.585Z", "runId": "2026-10-25T19-10-16Z", "adopters": [] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 73, "grade": "B", "fair": null, "version": "2023-07-04", "terms": 4546, "stars": 28, "license": "CC BY 3.0", "lastActivity": "2026-01-14T15:04:23Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 74, "grade": "B", "fair": 55, "version": "2023-07-04", "terms": 4546, "stars": 28, "license": "CC BY 3.0", "lastActivity": "2026-01-14T15:04:23Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 74, "grade": "B", "fair": 55, "version": "2023-07-04", "terms": 4546, "stars": 28, "license": "CC BY 3.0", "lastActivity": "2026-01-14T15:04:23Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 74, "grade": "B", "fair": 44, "version": "2023-07-04", "terms": 4546, "stars": 28, "license": "CC BY 3.0", "lastActivity": "2026-01-14T15:04:23Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 74, "grade": "B", "fair": 44, "version": "2023-07-04", "terms": 4546, "stars": 28, "license": "CC BY 3.0", "lastActivity": "2026-01-14T15:04:23Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 74, "grade": "B", "fair": 44, "version": "2023-07-04", "terms": 4546, "stars": 28, "license": "CC BY 3.0", "lastActivity": "2026-01-14T15:04:23Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 73 → 74 · rubric v1.0 → v2.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/nbo/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "http://purl.obolibrary.org/obo/nbo.owl", "neuroschema:evaluatedVersion": "http://purl.obolibrary.org/obo/nbo/releases/2023-07-04/nbo.owl" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://github.com/obo-behavior/behavior-ontology", "prov:atTime": "2026-10-25T19:10:22.714Z" }, { "@id": "https://github.com/obo-behavior/behavior-ontology", "prov:atTime": "2026-10-25T19:10:22.714Z" }, { "@id": "http://purl.obolibrary.org/obo/nbo.owl", "prov:atTime": "2026-10-25T19:10:23.226Z" }, { "@id": "https://raw.githubusercontent.com/obo-behavior/behavior-ontology/master/nbo.owl", "prov:atTime": "2026-10-25T19:10:22.851Z" }, { "@id": "https://github.com/obo-behavior/behavior-ontology.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:22.428Z" }, { "@id": "https://api.github.com/repos/obo-behavior/behavior-ontology", "prov:atTime": "2026-10-25T19:10:22.792Z" }, { "@id": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/nbo", "prov:atTime": "2026-10-25T19:10:22.485Z" }, { "@id": "https://obofoundry.org/registry/ontologies.jsonld", "prov:atTime": "2026-10-25T19:10:17.692Z" }, { "@id": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "prov:atTime": "2026-10-25T19:10:20.368Z" }, { "@id": "https://bioregistry.io/api/registry/nbo", "prov:atTime": "2026-10-25T19:10:22.328Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:23.585Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#nbo" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#nbo" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#nbo" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#nbo" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#nbo" } ] } }, { "id": "cogat", "acronym": "CogAt", "name": "Cognitive Atlas", "category": "behavior", "kind": "knowledge-base", "description": "A collaborative knowledge base of cognitive concepts, tasks, and the relations between them, built for annotating cognitive neuroscience experiments.", "formats": [ "Web", "JSON API", "OWL" ], "species": [ "Human" ], "maintainer": "Poldrack Lab, Stanford", "homepage": "https://www.cognitiveatlas.org/", "publications": [ { "title": "The Cognitive Atlas: Toward a Knowledge Foundation for Cognitive Neuroscience", "doi": "10.3389/fninf.2011.00017", "year": 2011 } ], "usedBy": [ { "name": "NeuroVault", "url": "https://neurovault.org/", "note": "Tagging statistical maps with cognitive tasks" } ], "tags": [ "cognition", "tasks", "fMRI" ], "url": "https://neuroschema.org/o/cogat/", "evaluation": { "links": { "homepage": { "url": "https://www.cognitiveatlas.org/", "code": 502, "state": "dead", "checkedAt": "2026-10-25T19:10:22.934Z" }, "repository": null, "download": null }, "github": null, "ols": null, "obo": null, "bioportal": null, "citations": [ { "doi": "10.3389/fninf.2011.00017", "count": 335, "source": "https://api.crossref.org/works/10.3389%2Ffninf.2011.00017", "fetchedAt": "2026-10-25T19:10:22.400Z" } ], "git": null, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [], "lastYear": 0, "from": null }, "bioregistry": null, "artifact": null, "score": 16, "gross": 21, "earned": 17, "possible": 80, "qualityApplies": false, "penalty": { "score": -5, "reason": "no commits, releases or dated files found", "steps": [ { "label": "No activity evidence", "pts": -5, "detail": "no commits, releases or dated files found" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 11, "breakdown": { "findable": { "score": 3, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 3, "max": 3, "detail": "doi:10.3389/fninf.2011.00017" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere" ] }, "accessible": { "score": 0, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 0, "max": 3, "detail": "HTTP 502" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 0, "max": 6, "detail": "no download or repository listed" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Homepage reachable: HTTP 502", "Artefact retrievable over HTTP(S) (A1): no download or repository listed", "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 0, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 0, "max": 4, "detail": "no version in artefact, registry or release tags" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): no version in artefact, registry or release tags", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Not applicable", "pts": 0, "max": 0, "detail": "knowledge-base without an OWL/OBO/RDF artefact; total scaled from 80 to 100" } ], "notes": [], "applicable": false }, "maintenance": { "score": 0, "max": 16, "steps": [ { "label": "Recency", "pts": 0, "max": 10, "detail": "no activity evidence" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases" } ], "notes": [ "Recency: no activity evidence", "Release cadence (12 months): 0 releases" ] }, "adoption": { "score": 6, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "1 project" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 4, "max": 5, "detail": "max(stars 0 → 0, citations 335 → 4)" } ], "notes": [ "Documented adopting projects: 1 project", "Reused by other ontologies: 0", "Community signal: max(stars 0 → 0, citations 335 → 4)" ] } }, "lastActivity": null, "adopterCount": 1, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": null, "evaluatedAt": "2026-10-25T19:10:22.934Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "NeuroVault", "url": "https://neurovault.org/", "note": "Tagging statistical maps with cognitive tasks", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 23, "grade": "D", "fair": null, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "dead" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 31, "grade": "D", "fair": 20, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "dead" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 26, "grade": "D", "fair": 20, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "dead" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 16, "grade": "D", "fair": 11, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "dead" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 16, "grade": "E", "fair": 11, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "dead" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 16, "grade": "E", "fair": 11, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "dead" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 26 → 16 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 31 → 26 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 23 → 31 · rubric v1.0 → v2.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/cogat/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://www.cognitiveatlas.org/", "neuroschema:evaluatedVersion": null }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://www.cognitiveatlas.org/", "prov:atTime": "2026-10-25T19:10:22.934Z" }, { "@id": "https://api.crossref.org/works/10.3389%2Ffninf.2011.00017", "prov:atTime": "2026-10-25T19:10:22.400Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:22.934Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#cogat" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#cogat" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#cogat" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#cogat" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#cogat" } ] } }, { "id": "cogpo", "acronym": "CogPO", "name": "Cognitive Paradigm Ontology", "category": "behavior", "kind": "ontology", "description": "Describes the stimuli, instructions and responses that make up cognitive experimental paradigms in neuroimaging studies.", "formats": [ "OWL" ], "species": [ "Human" ], "maintainer": "BrainMap / CogPO team", "homepage": "http://www.cogpo.org/", "bioportal": "COGPO", "publications": [ { "title": "The Cognitive Paradigm Ontology: Design and Application", "doi": "10.1007/s12021-011-9126-x", "year": 2011 } ], "usedBy": [ { "name": "BrainMap", "url": "https://www.brainmap.org/", "note": "Experiment coding scheme" } ], "tags": [ "paradigms", "tasks", "neuroimaging" ], "url": "https://neuroschema.org/o/cogpo/", "evaluation": { "links": { "homepage": { "url": "http://www.cogpo.org/", "code": 200, "state": "ok", "lastModified": "2013-05-19T19:17:32.000Z", "checkedAt": "2026-10-25T19:10:22.653Z" }, "repository": null, "download": null }, "github": null, "ols": null, "obo": null, "bioportal": null, "citations": [ { "doi": "10.1007/s12021-011-9126-x", "count": 124, "source": "https://api.crossref.org/works/10.1007%2Fs12021-011-9126-x", "fetchedAt": "2026-10-25T18:49:26.384Z", "stale": true, "staleReason": "HTTP 429", "lastAttemptAt": "2026-10-25T19:10:22.388Z" } ], "git": null, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [], "lastYear": 0, "from": null }, "bioregistry": null, "artifact": null, "score": 14, "gross": 19, "earned": 19, "possible": 100, "qualityApplies": true, "penalty": { "score": -5, "reason": "no commits, releases or dated files found", "steps": [ { "label": "No activity evidence", "pts": -5, "detail": "no commits, releases or dated files found" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 15, "breakdown": { "findable": { "score": 4, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 1, "max": 5, "detail": "1: BioPortal" }, { "label": "Citable reference (F2)", "pts": 3, "max": 3, "detail": "doi:10.1007/s12021-011-9126-x" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): 1: BioPortal" ] }, "accessible": { "score": 3, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 0, "max": 6, "detail": "no download or repository listed" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Artefact retrievable over HTTP(S) (A1): no download or repository listed", "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 0, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 0, "max": 4, "detail": "no version in artefact, registry or release tags" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): no version in artefact, registry or release tags", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 0, "max": 4, "detail": "no BFO/COB/DOLCE import found" }, { "label": "Standard relations (RO)", "pts": 0, "max": 2, "detail": "does not import the Relation Ontology" }, { "label": "Logical consistency", "pts": 0, "max": 6, "detail": "never checked by a reasoner" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "ROBOT report: warning density", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "Scaled 0/16 → 20", "pts": 0, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "Upper-ontology alignment: no BFO/COB/DOLCE import found", "Standard relations (RO): does not import the Relation Ontology", "Logical consistency: never checked by a reasoner", "ROBOT report: no errors: no ROBOT report available", "ROBOT report: warning density: no ROBOT report available", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 0, "max": 16, "steps": [ { "label": "Recency", "pts": 0, "max": 10, "detail": "no activity evidence" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases" } ], "notes": [ "Recency: no activity evidence", "Release cadence (12 months): 0 releases" ] }, "adoption": { "score": 4, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "1 project" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 2, "max": 5, "detail": "max(stars 0 → 0, citations 124 → 2)" } ], "notes": [ "Documented adopting projects: 1 project", "Reused by other ontologies: 0", "Community signal: max(stars 0 → 0, citations 124 → 2)" ] } }, "lastActivity": null, "adopterCount": 1, "reuseCount": 0, "importCount": 0, "registries": [ "BioPortal" ], "evaluatedVersion": null, "evaluatedAt": "2026-10-25T19:10:22.653Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "BrainMap", "url": "https://www.brainmap.org/", "note": "Experiment coding scheme", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 36, "grade": "D", "fair": null, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 41, "grade": "D", "fair": 30, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 36, "grade": "D", "fair": 30, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 14, "grade": "D", "fair": 15, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 14, "grade": "E", "fair": 15, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 14, "grade": "E", "fair": 15, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 1, "links": { "homepage": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 36 → 14 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 41 → 36 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 36 → 41 · rubric v1.0 → v2.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/cogpo/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "http://www.cogpo.org/", "neuroschema:evaluatedVersion": null }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "http://www.cogpo.org/", "prov:atTime": "2026-10-25T19:10:22.653Z" }, { "@id": "https://api.crossref.org/works/10.1007%2Fs12021-011-9126-x", "prov:atTime": "2026-10-25T18:49:26.384Z", "neuroschema:carriedForward": true } ] }, "prov:generatedAtTime": "2026-10-25T19:10:22.653Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#cogpo" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#cogpo" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#cogpo" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#cogpo" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#cogpo" } ] } }, { "id": "mf", "acronym": "MF", "name": "Mental Functioning Ontology", "category": "behavior", "kind": "ontology", "description": "Represents mental functioning, including mental processes such as cognition and traits such as intelligence.", "formats": [ "OWL" ], "species": [ "Human" ], "maintainer": "Janna Hastings et al.", "license": "CC BY 3.0", "homepage": "https://github.com/jannahastings/mental-functioning-ontology", "repository": "https://github.com/jannahastings/mental-functioning-ontology", "download": "http://purl.obolibrary.org/obo/mf.owl", "ols": "mf", "obo": "mf", "publications": [], "usedBy": [], "tags": [ "cognition", "mental processes", "OBO Foundry" ], "url": "https://neuroschema.org/o/mf/", "evaluation": { "links": { "homepage": { "url": "https://github.com/jannahastings/mental-functioning-ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:22.997Z" }, "repository": { "url": "https://github.com/jannahastings/mental-functioning-ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:22.997Z" }, "download": { "url": "http://purl.obolibrary.org/obo/mf.owl", "code": 200, "state": "ok", "resolvedUrl": "https://raw.githubusercontent.com/jannahastings/mental-functioning-ontology/master/ontology/MF.owl", "checkedAt": "2026-10-25T19:10:22.906Z" } }, "github": { "slug": "jannahastings/mental-functioning-ontology", "stars": 37, "forks": 12, "openIssues": 3, "pushedAt": "2026-02-06T14:32:12Z", "archived": false, "license": null, "source": "https://api.github.com/repos/jannahastings/mental-functioning-ontology", "fetchedAt": "2026-10-25T19:10:23.159Z" }, "ols": { "portal": "OLS (EMBL-EBI)", "id": "mf", "api": "v2", "title": "Mental Functioning Ontology", "iri": "http://purl.obolibrary.org/obo/MF.owl", "versionIri": "http://purl.obolibrary.org/obo/MF/2025-07-08/MF.owl", "version": "2025-07-08", "releaseDate": "2025-07-08", "terms": 400, "properties": 90, "individuals": 19, "importsFrom": [ "bfo", "dc", "dcterms", "go", "iao", "nbo", "ogms", "oio", "omo", "rdfs" ], "exportsTo": [ "addicto", "ado", "apollo_sv", "bcio", "epio", "gecko", "gmho", "gsso", "mfoem", "mfomd", "mondo", "occo", "ohd", "omrse", "oostt" ], "languages": [ "en" ], "loaded": "2026-10-25T00:09:42.228466480", "sourceFileTimestamp": "Sun Oct 25 00:09:40 UTC 2026", "obsolete": false, "status": "LOADED", "page": "https://www.ebi.ac.uk/ols4/ontologies/mf", "source": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/mf", "fetchedAt": "2026-10-25T19:10:22.783Z" }, "obo": { "id": "mf", "status": "active", "domain": "health", "license": "CC BY 3.0", "usages": [], "source": "https://obofoundry.org/registry/ontologies.jsonld", "fetchedAt": "2026-10-25T19:10:17.692Z" }, "bioportal": null, "citations": [], "git": { "commit": "ba59d2c92dfa5c3190c8cba636687c1ef2fa06f2", "ref": "master", "headTag": null, "latestTag": null, "tagCount": 0, "tagDates": [], "url": "https://github.com/jannahastings/mental-functioning-ontology/tree/ba59d2c92dfa5c3190c8cba636687c1ef2fa06f2", "source": "https://github.com/jannahastings/mental-functioning-ontology.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:22.718Z" }, "tib": null, "dashboard": { "ns": "mf", "checks": { "FP01 Open": "WARN", "FP02 Common Format": "PASS", "FP03 URIs": "ERROR", "FP04 Versioning": "ERROR", "FP05 Scope": "PASS", "FP06 Textual Definitions": "ERROR", "FP07 Relations": "PASS", "FP08 Documented": "PASS", "FP09 Plurality of Users": "ERROR", "FP11 Locus of Authority": "PASS", "FP12 Naming Conventions": "PASS", "FP16 Maintenance": "PASS", "FP20 Responsiveness": "PASS", "ROBOT Report": "ERROR" }, "robot": { "ERROR": 2, "INFO": 4, "WARN": 12 }, "consistent": true, "unsatisfiable": 0, "classes": 104, "axioms": 471, "owl2dl": false, "reusedPct": 25.78, "usedBy": [ "apollo_sv", "mfoem", "mfomd", "mondo", "occo", "ohd", "omrse" ], "oboScore": null, "summary": "ERROR", "checkedVersion": "http://purl.obolibrary.org/obo/MF/2025-07-08/MF.owl", "checkedAt": "2026-02-25T10:14:53.630Z", "page": "https://dashboard.obofoundry.org/dashboard/mf/dashboard.html", "source": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "fetchedAt": "2026-10-25T19:10:20.368Z" }, "quality": null, "oops": { "error": "fetch failed", "checkedAt": "2026-10-25T19:08:14.043Z", "source": "data/quality/mf.json" }, "releases": { "dates": [ "2025-07-08" ], "lastYear": 0, "from": "OLS version IRI" }, "bioregistry": { "prefix": "mf", "name": "Mental Functioning Ontology", "mappings": { "aberowl": "MF", "biocontext": "MF", "bioportal": "MF", "fairsharing": "FAIRsharing.4gm9gt", "obofoundry": "mf", "ols": "mf", "ontobee": "MF", "wikidata.entity": "Q55118443" }, "dependsOn": [], "appearsIn": [], "license": "CC-BY-3.0", "version": "2025-07-08", "deprecated": false, "page": "https://bioregistry.io/mf", "source": "https://bioregistry.io/api/registry/mf", "fetchedAt": "2026-10-25T19:10:22.628Z" }, "artifact": { "source": "https://raw.githubusercontent.com/jannahastings/mental-functioning-ontology/master/ontology/MF.owl", "versionIri": "&obo;MF/2025-07-08/MF.owl", "versionInfo": "2025-07-08", "etag": "\"87611f03f3bf7490bffd7863b0c3fb49de0e7b74680dd5b457ba57959b47ec71\"", "contentType": "text/plain", "fetchedAt": "2026-10-25T19:10:22.833Z" }, "score": 68, "gross": 68, "earned": 68, "possible": 100, "qualityApplies": true, "penalty": { "score": 0, "reason": "active (last activity 2026-02-06)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.7 years → 4 × max(0, 0.7 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "C", "fair": 44, "breakdown": { "findable": { "score": 9, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 4, "max": 4, "detail": "purl.obolibrary.org" }, { "label": "Indexed in services (F4)", "pts": 5, "max": 5, "detail": "5: OLS, BioPortal, OBO Foundry, Bioregistry, FAIRsharing" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 12, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "download HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 3, "max": 3, "detail": "OBO Foundry, Bioregistry" } ], "notes": [] }, "interoperable": { "score": 12, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL" }, { "label": "References other vocabularies (I3)", "pts": 4, "max": 4, "detail": "imports 6: bfo, go, iao, nbo, ogms, omo" } ], "notes": [] }, "reusable": { "score": 11, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "CC BY 3.0" }, { "label": "Release provenance (R1.2)", "pts": 4, "max": 4, "detail": "2025-07-08 (version IRI in the artefact)" }, { "label": "Community standards (R1.3)", "pts": 2, "max": 3, "detail": "OBO principles: 8/13 checks pass" } ], "notes": [ "Community standards (R1.3): OBO principles: 8/13 checks pass" ] }, "quality": { "score": 14, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 4, "max": 4, "detail": "imports BFO" }, { "label": "Standard relations (RO)", "pts": 0, "max": 2, "detail": "does not import the Relation Ontology" }, { "label": "Logical consistency", "pts": 6, "max": 6, "detail": "consistent, 0 unsatisfiable classes (OBO Dashboard)" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "2 errors" }, { "label": "ROBOT report: warning density", "pts": 1, "max": 2, "detail": "12 warnings / 104 classes = 0.12" }, { "label": "Scaled 11/16 → 20", "pts": 3, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "Standard relations (RO): does not import the Relation Ontology", "ROBOT report: no errors: 2 errors", "ROBOT report: warning density: 12 warnings / 104 classes = 0.12", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 5, "max": 16, "steps": [ { "label": "Recency", "pts": 5, "max": 10, "detail": "2026-02-06 → 8.6 months (≤ 1 year)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases (OLS version IRI)" } ], "notes": [ "Recency: 2026-02-06 → 8.6 months (≤ 1 year)", "Release cadence (12 months): 0 releases (OLS version IRI)" ] }, "adoption": { "score": 5, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 0, "max": 7, "detail": "0 projects" }, { "label": "Reused by other ontologies", "pts": 3, "max": 4, "detail": "15: apollo_sv, mfoem, mfomd, mondo, occo, ohd…" }, { "label": "Community signal", "pts": 2, "max": 5, "detail": "max(stars 37 → 2, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 0 projects", "Reused by other ontologies: 15: apollo_sv, mfoem, mfomd, mondo, occo, ohd…", "Community signal: max(stars 37 → 2, citations 0 → 0)" ] } }, "lastActivity": "2026-02-06T14:32:12Z", "adopterCount": 0, "reuseCount": 15, "importCount": 6, "registries": [ "OLS", "BioPortal", "OBO Foundry", "Bioregistry", "FAIRsharing" ], "evaluatedVersion": { "label": "2025-07-08", "from": "version IRI in the artefact", "value": "&obo;MF/2025-07-08/MF.owl", "inArtefact": true, "all": [ { "label": "2025-07-08", "from": "version IRI in the artefact", "value": "&obo;MF/2025-07-08/MF.owl", "inArtefact": true }, { "label": "2025-07-08", "from": "version info in the artefact", "value": "2025-07-08", "inArtefact": true }, { "label": "2025-07-08", "from": "OLS", "value": "http://purl.obolibrary.org/obo/MF/2025-07-08/MF.owl" }, { "label": "commit ba59d2c", "from": "master at evaluation time", "value": "ba59d2c92dfa5c3190c8cba636687c1ef2fa06f2" } ] }, "evaluatedAt": "2026-10-25T19:10:23.380Z", "runId": "2026-10-25T19-10-16Z", "adopters": [] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 73, "grade": "B", "fair": null, "version": "2025-07-08", "terms": 400, "stars": 37, "license": "CC BY 3.0", "lastActivity": "2026-02-06T14:32:12Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 74, "grade": "B", "fair": 55, "version": "2025-07-08", "terms": 400, "stars": 37, "license": "CC BY 3.0", "lastActivity": "2026-02-06T14:32:12Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 74, "grade": "B", "fair": 55, "version": "2025-07-08", "terms": 400, "stars": 37, "license": "CC BY 3.0", "lastActivity": "2026-02-06T14:32:12Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 68, "grade": "C", "fair": 44, "version": "2025-07-08", "terms": 400, "stars": 37, "license": "CC BY 3.0", "lastActivity": "2026-02-06T14:32:12Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 68, "grade": "C", "fair": 44, "version": "2025-07-08", "terms": 400, "stars": 37, "license": "CC BY 3.0", "lastActivity": "2026-02-06T14:32:12Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 65, "grade": "C", "fair": 44, "version": "2025-07-08", "terms": 400, "stars": 37, "license": "CC BY 3.0", "lastActivity": "2026-02-06T14:32:12Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 68 → 65 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 74 → 68 (grade B → C) · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 73 → 74 · rubric v1.0 → v2.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/mf/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "http://purl.obolibrary.org/obo/mf.owl", "neuroschema:evaluatedVersion": "&obo;MF/2025-07-08/MF.owl" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://github.com/jannahastings/mental-functioning-ontology", "prov:atTime": "2026-10-25T19:10:22.997Z" }, { "@id": "https://github.com/jannahastings/mental-functioning-ontology", "prov:atTime": "2026-10-25T19:10:22.997Z" }, { "@id": "http://purl.obolibrary.org/obo/mf.owl", "prov:atTime": "2026-10-25T19:10:22.906Z" }, { "@id": "https://raw.githubusercontent.com/jannahastings/mental-functioning-ontology/master/ontology/MF.owl", "prov:atTime": "2026-10-25T19:10:22.833Z" }, { "@id": "https://github.com/jannahastings/mental-functioning-ontology.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:22.718Z" }, { "@id": "https://api.github.com/repos/jannahastings/mental-functioning-ontology", "prov:atTime": "2026-10-25T19:10:23.159Z" }, { "@id": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/mf", "prov:atTime": "2026-10-25T19:10:22.783Z" }, { "@id": "https://obofoundry.org/registry/ontologies.jsonld", "prov:atTime": "2026-10-25T19:10:17.692Z" }, { "@id": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "prov:atTime": "2026-10-25T19:10:20.368Z" }, { "@id": "https://bioregistry.io/api/registry/mf", "prov:atTime": "2026-10-25T19:10:22.628Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:23.380Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#mf" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#mf" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#mf" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#mf" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#mf" } ] } }, { "id": "mfoem", "acronym": "MFOEM", "name": "Emotion Ontology", "category": "behavior", "kind": "ontology", "description": "Represents affective phenomena such as emotions, moods and appraisals, as an extension of the Mental Functioning Ontology.", "formats": [ "OWL" ], "species": [ "Human" ], "maintainer": "Janna Hastings et al.", "license": "CC BY 3.0", "homepage": "https://github.com/jannahastings/emotion-ontology", "repository": "https://github.com/jannahastings/emotion-ontology", "download": "http://purl.obolibrary.org/obo/mfoem.owl", "ols": "mfoem", "obo": "mfoem", "publications": [], "usedBy": [], "tags": [ "emotion", "affect", "OBO Foundry" ], "url": "https://neuroschema.org/o/mfoem/", "evaluation": { "links": { "homepage": { "url": "https://github.com/jannahastings/emotion-ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:23.107Z" }, "repository": { "url": "https://github.com/jannahastings/emotion-ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:23.107Z" }, "download": { "url": "http://purl.obolibrary.org/obo/mfoem.owl", "code": 200, "state": "ok", "resolvedUrl": "https://raw.githubusercontent.com/jannahastings/emotion-ontology/master/ontology/MFOEM.owl", "checkedAt": "2026-10-25T19:10:22.965Z" } }, "github": { "slug": "jannahastings/emotion-ontology", "stars": 72, "forks": 15, "openIssues": 2, "pushedAt": "2025-10-17T14:51:07Z", "archived": false, "license": null, "source": "https://api.github.com/repos/jannahastings/emotion-ontology", "fetchedAt": "2026-10-25T19:10:23.230Z" }, "ols": { "portal": "OLS (EMBL-EBI)", "id": "mfoem", "api": "v2", "title": "Emotion Ontology", "iri": "http://purl.obolibrary.org/obo/MFOEM.owl", "versionIri": "http://purl.obolibrary.org/obo/MFOEM/2025-07-31/MFOEM.owl", "version": "2025-07-31", "releaseDate": "2025-07-31", "terms": 624, "properties": 99, "individuals": 19, "importsFrom": [ "bfo", "dc", "dcterms", "go", "iao", "mf", "nbo", "ogms", "oio", "omo", "rdfs" ], "exportsTo": [ "addicto", "bcio", "epio", "valuesets" ], "languages": [ "de", "en", "es", "fr" ], "loaded": "2026-10-25T00:09:46.209602596", "sourceFileTimestamp": "Sun Oct 25 00:09:44 UTC 2026", "obsolete": false, "status": "LOADED", "page": "https://www.ebi.ac.uk/ols4/ontologies/mfoem", "source": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/mfoem", "fetchedAt": "2026-10-25T19:10:23.058Z" }, "obo": { "id": "mfoem", "status": "active", "domain": "health", "license": "CC BY 3.0", "usages": [], "source": "https://obofoundry.org/registry/ontologies.jsonld", "fetchedAt": "2026-10-25T19:10:17.692Z" }, "bioportal": null, "citations": [], "git": { "commit": "7f4bddd2dee96ef635880987315a1cf947b57ed8", "ref": "master", "headTag": null, "latestTag": null, "tagCount": 0, "tagDates": [], "url": "https://github.com/jannahastings/emotion-ontology/tree/7f4bddd2dee96ef635880987315a1cf947b57ed8", "source": "https://github.com/jannahastings/emotion-ontology.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:22.799Z" }, "tib": null, "dashboard": { "ns": "mfoem", "checks": { "FP01 Open": "WARN", "FP02 Common Format": "PASS", "FP03 URIs": "ERROR", "FP04 Versioning": "ERROR", "FP05 Scope": "PASS", "FP06 Textual Definitions": "WARN", "FP07 Relations": "INFO", "FP08 Documented": "PASS", "FP09 Plurality of Users": "ERROR", "FP11 Locus of Authority": "PASS", "FP12 Naming Conventions": "ERROR", "FP16 Maintenance": "PASS", "FP20 Responsiveness": "PASS", "ROBOT Report": "ERROR" }, "robot": { "ERROR": 67, "INFO": 1, "WARN": 79 }, "consistent": true, "unsatisfiable": 0, "classes": 230, "axioms": 1194, "owl2dl": false, "reusedPct": 11.51, "usedBy": [], "oboScore": null, "summary": "ERROR", "checkedVersion": "http://purl.obolibrary.org/obo/MFOEM/2025-07-31/MFOEM.owl", "checkedAt": "2025-12-09T20:58:39.801Z", "page": "https://dashboard.obofoundry.org/dashboard/mfoem/dashboard.html", "source": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "fetchedAt": "2026-10-25T19:10:20.368Z" }, "quality": null, "oops": { "error": "fetch failed", "checkedAt": "2026-10-25T19:08:24.536Z", "source": "data/quality/mfoem.json" }, "releases": { "dates": [ "2025-07-31" ], "lastYear": 0, "from": "OLS version IRI" }, "bioregistry": { "prefix": "mfoem", "name": "Emotion Ontology", "mappings": { "aberowl": "MFOEM", "biocontext": "MFOEM", "bioportal": "MFOEM", "fairsharing": "FAIRsharing.dx30m8", "obofoundry": "mfoem", "ols": "mfoem", "ontobee": "MFOEM", "wikidata.entity": "Q55118370" }, "dependsOn": [], "appearsIn": [], "license": "CC-BY-3.0", "version": "2025-07-31", "deprecated": false, "page": "https://bioregistry.io/mfoem", "source": "https://bioregistry.io/api/registry/mfoem", "fetchedAt": "2026-10-25T19:10:22.709Z" }, "artifact": { "source": "https://raw.githubusercontent.com/jannahastings/emotion-ontology/master/ontology/MFOEM.owl", "versionIri": "http://purl.obolibrary.org/obo/MFOEM/2025-07-31/MFOEM.owl", "versionInfo": "2025-07-31", "etag": "\"3a6ad73ffaa4035bcf3b40e63bcec0290c75abcd8b9b7833a73c0dd421db1724\"", "contentType": "text/plain", "fetchedAt": "2026-10-25T19:10:23.082Z" }, "score": 63, "gross": 63, "earned": 63, "possible": 100, "qualityApplies": true, "penalty": { "score": 0, "reason": "active (last activity 2025-10-17)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "1.0 years → 4 × max(0, 1.0 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "C", "fair": 43, "breakdown": { "findable": { "score": 9, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 4, "max": 4, "detail": "purl.obolibrary.org" }, { "label": "Indexed in services (F4)", "pts": 5, "max": 5, "detail": "5: OLS, BioPortal, OBO Foundry, Bioregistry, FAIRsharing" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 12, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "download HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 3, "max": 3, "detail": "OBO Foundry, Bioregistry" } ], "notes": [] }, "interoperable": { "score": 12, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL" }, { "label": "References other vocabularies (I3)", "pts": 4, "max": 4, "detail": "imports 7: bfo, go, iao, mf, nbo, ogms, omo" } ], "notes": [] }, "reusable": { "score": 10, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "CC BY 3.0" }, { "label": "Release provenance (R1.2)", "pts": 4, "max": 4, "detail": "2025-07-31 (version IRI in the artefact)" }, { "label": "Community standards (R1.3)", "pts": 1, "max": 3, "detail": "OBO principles: 6/13 checks pass" } ], "notes": [ "Community standards (R1.3): OBO principles: 6/13 checks pass" ] }, "quality": { "score": 14, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 4, "max": 4, "detail": "imports BFO" }, { "label": "Standard relations (RO)", "pts": 0, "max": 2, "detail": "does not import the Relation Ontology" }, { "label": "Logical consistency", "pts": 6, "max": 6, "detail": "consistent, 0 unsatisfiable classes (OBO Dashboard)" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "67 errors" }, { "label": "ROBOT report: warning density", "pts": 1, "max": 2, "detail": "79 warnings / 230 classes = 0.34" }, { "label": "Scaled 11/16 → 20", "pts": 3, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "Standard relations (RO): does not import the Relation Ontology", "ROBOT report: no errors: 67 errors", "ROBOT report: warning density: 79 warnings / 230 classes = 0.34", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 2, "max": 16, "steps": [ { "label": "Recency", "pts": 2, "max": 10, "detail": "2025-10-17 → 12.3 months (≤ 2 years)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases (OLS version IRI)" } ], "notes": [ "Recency: 2025-10-17 → 12.3 months (≤ 2 years)", "Release cadence (12 months): 0 releases (OLS version IRI)" ] }, "adoption": { "score": 4, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 0, "max": 7, "detail": "0 projects" }, { "label": "Reused by other ontologies", "pts": 2, "max": 4, "detail": "4: addicto, bcio, epio, valuesets" }, { "label": "Community signal", "pts": 2, "max": 5, "detail": "max(stars 72 → 2, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 0 projects", "Reused by other ontologies: 4: addicto, bcio, epio, valuesets", "Community signal: max(stars 72 → 2, citations 0 → 0)" ] } }, "lastActivity": "2025-10-17T14:51:07Z", "adopterCount": 0, "reuseCount": 4, "importCount": 7, "registries": [ "OLS", "BioPortal", "OBO Foundry", "Bioregistry", "FAIRsharing" ], "evaluatedVersion": { "label": "2025-07-31", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/MFOEM/2025-07-31/MFOEM.owl", "inArtefact": true, "all": [ { "label": "2025-07-31", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/MFOEM/2025-07-31/MFOEM.owl", "inArtefact": true }, { "label": "2025-07-31", "from": "version info in the artefact", "value": "2025-07-31", "inArtefact": true }, { "label": "2025-07-31", "from": "OLS", "value": "http://purl.obolibrary.org/obo/MFOEM/2025-07-31/MFOEM.owl" }, { "label": "commit 7f4bddd", "from": "master at evaluation time", "value": "7f4bddd2dee96ef635880987315a1cf947b57ed8" } ] }, "evaluatedAt": "2026-10-25T19:10:23.530Z", "runId": "2026-10-25T19-10-16Z", "adopters": [] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 69, "grade": "B", "fair": null, "version": "2025-07-31", "terms": 624, "stars": 72, "license": "CC BY 3.0", "lastActivity": "2025-10-17T14:51:07Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 71, "grade": "B", "fair": 55, "version": "2025-07-31", "terms": 624, "stars": 72, "license": "CC BY 3.0", "lastActivity": "2025-10-17T14:51:07Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 71, "grade": "B", "fair": 55, "version": "2025-07-31", "terms": 624, "stars": 72, "license": "CC BY 3.0", "lastActivity": "2025-10-17T14:51:07Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 63, "grade": "C", "fair": 43, "version": "2025-07-31", "terms": 624, "stars": 72, "license": "CC BY 3.0", "lastActivity": "2025-10-17T14:51:07Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 63, "grade": "C", "fair": 43, "version": "2025-07-31", "terms": 624, "stars": 72, "license": "CC BY 3.0", "lastActivity": "2025-10-17T14:51:07Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 56, "grade": "C", "fair": 43, "version": "2025-07-31", "terms": 624, "stars": 72, "license": "CC BY 3.0", "lastActivity": "2025-10-17T14:51:07Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 63 → 56 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 71 → 63 (grade B → C) · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 69 → 71 · rubric v1.0 → v2.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/mfoem/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "http://purl.obolibrary.org/obo/mfoem.owl", "neuroschema:evaluatedVersion": "http://purl.obolibrary.org/obo/MFOEM/2025-07-31/MFOEM.owl" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://github.com/jannahastings/emotion-ontology", "prov:atTime": "2026-10-25T19:10:23.107Z" }, { "@id": "https://github.com/jannahastings/emotion-ontology", "prov:atTime": "2026-10-25T19:10:23.107Z" }, { "@id": "http://purl.obolibrary.org/obo/mfoem.owl", "prov:atTime": "2026-10-25T19:10:22.965Z" }, { "@id": "https://raw.githubusercontent.com/jannahastings/emotion-ontology/master/ontology/MFOEM.owl", "prov:atTime": "2026-10-25T19:10:23.082Z" }, { "@id": "https://github.com/jannahastings/emotion-ontology.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:22.799Z" }, { "@id": "https://api.github.com/repos/jannahastings/emotion-ontology", "prov:atTime": "2026-10-25T19:10:23.230Z" }, { "@id": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/mfoem", "prov:atTime": "2026-10-25T19:10:23.058Z" }, { "@id": "https://obofoundry.org/registry/ontologies.jsonld", "prov:atTime": "2026-10-25T19:10:17.692Z" }, { "@id": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "prov:atTime": "2026-10-25T19:10:20.368Z" }, { "@id": "https://bioregistry.io/api/registry/mfoem", "prov:atTime": "2026-10-25T19:10:22.709Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:23.530Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#mfoem" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#mfoem" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#mfoem" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#mfoem" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#mfoem" } ] } }, { "id": "mfomd", "acronym": "MFOMD", "name": "Mental Disease Ontology", "category": "disease", "kind": "ontology", "description": "Describes and categorises mental disorders, built on the Mental Functioning Ontology.", "formats": [ "OWL" ], "species": [ "Human" ], "maintainer": "Janna Hastings et al.", "license": "CC BY 3.0", "homepage": "https://github.com/jannahastings/mental-functioning-ontology", "repository": "https://github.com/jannahastings/mental-functioning-ontology", "download": "http://purl.obolibrary.org/obo/mfomd.owl", "ols": "mfomd", "obo": "mfomd", "publications": [], "usedBy": [], "tags": [ "psychiatry", "mental disorders", "OBO Foundry" ], "url": "https://neuroschema.org/o/mfomd/", "evaluation": { "links": { "homepage": { "url": "https://github.com/jannahastings/mental-functioning-ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:22.999Z" }, "repository": { "url": "https://github.com/jannahastings/mental-functioning-ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:22.999Z" }, "download": { "url": "http://purl.obolibrary.org/obo/mfomd.owl", "code": 200, "state": "ok", "resolvedUrl": "https://raw.githubusercontent.com/jannahastings/mental-functioning-ontology/master/ontology/MFOMD.owl", "checkedAt": "2026-10-25T19:10:23.100Z" } }, "github": { "slug": "jannahastings/mental-functioning-ontology", "stars": 37, "forks": 12, "openIssues": 3, "pushedAt": "2026-02-06T14:32:12Z", "archived": false, "license": null, "source": "https://api.github.com/repos/jannahastings/mental-functioning-ontology", "fetchedAt": "2026-10-25T19:10:23.159Z" }, "ols": { "portal": "OLS (EMBL-EBI)", "id": "mfomd", "api": "v2", "title": "Mental Disease Ontology", "iri": "http://purl.obolibrary.org/obo/MFOMD.owl", "versionIri": "http://purl.obolibrary.org/obo/MFOMD/2020-04-26/MFOMD.owl", "version": "2020-04-26", "releaseDate": "2020-04-26", "terms": 1172, "properties": 378, "individuals": 73, "importsFrom": [ "bfo", "dc", "dcterms", "doid", "go", "iao", "ido", "mf", "nbo", "obi", "ogms", "oio", "omo", "owl", "rdfs" ], "exportsTo": [ "ado", "epio", "gsso", "mondo" ], "languages": [ "en", "es" ], "loaded": "2026-10-25T00:09:59.783686570", "sourceFileTimestamp": "Sun Oct 25 00:09:59 UTC 2026", "obsolete": false, "status": "LOADED", "page": "https://www.ebi.ac.uk/ols4/ontologies/mfomd", "source": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/mfomd", "fetchedAt": "2026-10-25T19:10:23.041Z" }, "obo": { "id": "mfomd", "status": "active", "domain": "health", "license": "CC BY 3.0", "usages": [], "source": "https://obofoundry.org/registry/ontologies.jsonld", "fetchedAt": "2026-10-25T19:10:17.692Z" }, "bioportal": null, "citations": [], "git": { "commit": "ba59d2c92dfa5c3190c8cba636687c1ef2fa06f2", "ref": "master", "headTag": null, "latestTag": null, "tagCount": 0, "tagDates": [], "url": "https://github.com/jannahastings/mental-functioning-ontology/tree/ba59d2c92dfa5c3190c8cba636687c1ef2fa06f2", "source": "https://github.com/jannahastings/mental-functioning-ontology.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:22.718Z" }, "tib": null, "dashboard": { "ns": "mfomd", "checks": { "FP01 Open": "ERROR", "FP02 Common Format": "PASS", "FP03 URIs": "ERROR", "FP04 Versioning": "ERROR", "FP05 Scope": "PASS", "FP06 Textual Definitions": "ERROR", "FP07 Relations": "PASS", "FP08 Documented": "PASS", "FP09 Plurality of Users": "ERROR", "FP11 Locus of Authority": "PASS", "FP12 Naming Conventions": "ERROR", "FP16 Maintenance": "WARN", "FP20 Responsiveness": "PASS", "ROBOT Report": "ERROR" }, "robot": { "ERROR": 12, "INFO": 35, "WARN": 82 }, "consistent": true, "unsatisfiable": 0, "classes": 148, "axioms": 670, "owl2dl": false, "reusedPct": 19.08, "usedBy": [ "gsso", "mondo" ], "oboScore": null, "summary": "ERROR", "checkedVersion": "http://purl.obolibrary.org/obo/MFOMD/2020-04-26/MFOMD.owl", "checkedAt": "2025-12-09T20:58:46.101Z", "page": "https://dashboard.obofoundry.org/dashboard/mfomd/dashboard.html", "source": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "fetchedAt": "2026-10-25T19:10:20.368Z" }, "quality": null, "oops": { "error": "fetch failed", "checkedAt": "2026-10-25T19:08:35.028Z", "source": "data/quality/mfomd.json" }, "releases": { "dates": [ "2020-04-26" ], "lastYear": 0, "from": "OLS version IRI" }, "bioregistry": { "prefix": "mfomd", "name": "Mental Disease Ontology", "mappings": { "aberowl": "MFOMD", "biocontext": "MFOMD", "bioportal": "MFOMD", "fairsharing": "FAIRsharing.q053vb", "obofoundry": "mfomd", "ols": "mfomd", "ontobee": "MFOMD", "wikidata.entity": "Q55118439" }, "dependsOn": [], "appearsIn": [], "license": "CC-BY-3.0", "version": "2020-04-26", "deprecated": false, "page": "https://bioregistry.io/mfomd", "source": "https://bioregistry.io/api/registry/mfomd", "fetchedAt": "2026-10-25T19:10:22.889Z" }, "artifact": { "source": "https://raw.githubusercontent.com/jannahastings/mental-functioning-ontology/master/ontology/MFOMD.owl", "versionIri": "http://purl.obolibrary.org/obo/MFOMD/2020-04-26/MFOMD.owl", "versionInfo": "2020-04-26", "etag": "\"50689e6d928dfd81dd6951849ff03b23a9e306a83be3ce091f566f88236f6f3d\"", "contentType": "text/plain", "fetchedAt": "2026-10-25T19:10:23.224Z" }, "score": 65, "gross": 65, "earned": 65, "possible": 100, "qualityApplies": true, "penalty": { "score": 0, "reason": "active (last activity 2026-02-06)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.7 years → 4 × max(0, 0.7 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "C", "fair": 43, "breakdown": { "findable": { "score": 9, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 4, "max": 4, "detail": "purl.obolibrary.org" }, { "label": "Indexed in services (F4)", "pts": 5, "max": 5, "detail": "5: OLS, BioPortal, OBO Foundry, Bioregistry, FAIRsharing" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 12, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "download HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 3, "max": 3, "detail": "OBO Foundry, Bioregistry" } ], "notes": [] }, "interoperable": { "score": 12, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL" }, { "label": "References other vocabularies (I3)", "pts": 4, "max": 4, "detail": "imports 10: bfo, doid, go, iao, ido, mf, nbo, obi…" } ], "notes": [] }, "reusable": { "score": 10, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "CC BY 3.0" }, { "label": "Release provenance (R1.2)", "pts": 4, "max": 4, "detail": "2020-04-26 (version IRI in the artefact)" }, { "label": "Community standards (R1.3)", "pts": 1, "max": 3, "detail": "OBO principles: 6/13 checks pass" } ], "notes": [ "Community standards (R1.3): OBO principles: 6/13 checks pass" ] }, "quality": { "score": 13, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 4, "max": 4, "detail": "imports BFO" }, { "label": "Standard relations (RO)", "pts": 0, "max": 2, "detail": "does not import the Relation Ontology" }, { "label": "Logical consistency", "pts": 6, "max": 6, "detail": "consistent, 0 unsatisfiable classes (OBO Dashboard)" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "12 errors" }, { "label": "ROBOT report: warning density", "pts": 0, "max": 2, "detail": "82 warnings / 148 classes = 0.55" }, { "label": "Scaled 10/16 → 20", "pts": 3, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "Standard relations (RO): does not import the Relation Ontology", "ROBOT report: no errors: 12 errors", "ROBOT report: warning density: 82 warnings / 148 classes = 0.55", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 5, "max": 16, "steps": [ { "label": "Recency", "pts": 5, "max": 10, "detail": "2026-02-06 → 8.6 months (≤ 1 year)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases (OLS version IRI)" } ], "notes": [ "Recency: 2026-02-06 → 8.6 months (≤ 1 year)", "Release cadence (12 months): 0 releases (OLS version IRI)" ] }, "adoption": { "score": 4, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 0, "max": 7, "detail": "0 projects" }, { "label": "Reused by other ontologies", "pts": 2, "max": 4, "detail": "4: gsso, mondo, ado, epio" }, { "label": "Community signal", "pts": 2, "max": 5, "detail": "max(stars 37 → 2, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 0 projects", "Reused by other ontologies: 4: gsso, mondo, ado, epio", "Community signal: max(stars 37 → 2, citations 0 → 0)" ] } }, "lastActivity": "2026-02-06T14:32:12Z", "adopterCount": 0, "reuseCount": 4, "importCount": 10, "registries": [ "OLS", "BioPortal", "OBO Foundry", "Bioregistry", "FAIRsharing" ], "evaluatedVersion": { "label": "2020-04-26", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/MFOMD/2020-04-26/MFOMD.owl", "inArtefact": true, "all": [ { "label": "2020-04-26", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/MFOMD/2020-04-26/MFOMD.owl", "inArtefact": true }, { "label": "2020-04-26", "from": "version info in the artefact", "value": "2020-04-26", "inArtefact": true }, { "label": "2020-04-26", "from": "OLS", "value": "http://purl.obolibrary.org/obo/MFOMD/2020-04-26/MFOMD.owl" }, { "label": "commit ba59d2c", "from": "master at evaluation time", "value": "ba59d2c92dfa5c3190c8cba636687c1ef2fa06f2" } ] }, "evaluatedAt": "2026-10-25T19:10:23.380Z", "runId": "2026-10-25T19-10-16Z", "adopters": [] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 73, "grade": "B", "fair": null, "version": "2020-04-26", "terms": 1172, "stars": 37, "license": "CC BY 3.0", "lastActivity": "2026-02-06T14:32:12Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 74, "grade": "B", "fair": 55, "version": "2020-04-26", "terms": 1172, "stars": 37, "license": "CC BY 3.0", "lastActivity": "2026-02-06T14:32:12Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 74, "grade": "B", "fair": 55, "version": "2020-04-26", "terms": 1172, "stars": 37, "license": "CC BY 3.0", "lastActivity": "2026-02-06T14:32:12Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 65, "grade": "C", "fair": 43, "version": "2020-04-26", "terms": 1172, "stars": 37, "license": "CC BY 3.0", "lastActivity": "2026-02-06T14:32:12Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 65, "grade": "C", "fair": 43, "version": "2020-04-26", "terms": 1172, "stars": 37, "license": "CC BY 3.0", "lastActivity": "2026-02-06T14:32:12Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 59, "grade": "C", "fair": 43, "version": "2020-04-26", "terms": 1172, "stars": 37, "license": "CC BY 3.0", "lastActivity": "2026-02-06T14:32:12Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 65 → 59 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 74 → 65 (grade B → C) · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 73 → 74 · rubric v1.0 → v2.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/mfomd/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "http://purl.obolibrary.org/obo/mfomd.owl", "neuroschema:evaluatedVersion": "http://purl.obolibrary.org/obo/MFOMD/2020-04-26/MFOMD.owl" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://github.com/jannahastings/mental-functioning-ontology", "prov:atTime": "2026-10-25T19:10:22.999Z" }, { "@id": "https://github.com/jannahastings/mental-functioning-ontology", "prov:atTime": "2026-10-25T19:10:22.999Z" }, { "@id": "http://purl.obolibrary.org/obo/mfomd.owl", "prov:atTime": "2026-10-25T19:10:23.100Z" }, { "@id": "https://raw.githubusercontent.com/jannahastings/mental-functioning-ontology/master/ontology/MFOMD.owl", "prov:atTime": "2026-10-25T19:10:23.224Z" }, { "@id": "https://github.com/jannahastings/mental-functioning-ontology.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:22.718Z" }, { "@id": "https://api.github.com/repos/jannahastings/mental-functioning-ontology", "prov:atTime": "2026-10-25T19:10:23.159Z" }, { "@id": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/mfomd", "prov:atTime": "2026-10-25T19:10:23.041Z" }, { "@id": "https://obofoundry.org/registry/ontologies.jsonld", "prov:atTime": "2026-10-25T19:10:17.692Z" }, { "@id": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "prov:atTime": "2026-10-25T19:10:20.368Z" }, { "@id": "https://bioregistry.io/api/registry/mfomd", "prov:atTime": "2026-10-25T19:10:22.889Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:23.380Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#mfomd" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#mfomd" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#mfomd" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#mfomd" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#mfomd" } ] } }, { "id": "mondo", "acronym": "MONDO", "name": "Mondo Disease Ontology", "category": "disease", "kind": "ontology", "description": "A unified disease ontology that merges many disease resources, with comprehensive coverage of neurological and neurodevelopmental disorders.", "formats": [ "OWL", "OBO", "JSON" ], "species": [ "Human", "Multi-species" ], "maintainer": "Monarch Initiative", "license": "CC BY 4.0", "homepage": "https://mondo.monarchinitiative.org/", "repository": "https://github.com/monarch-initiative/mondo", "download": "http://purl.obolibrary.org/obo/mondo.owl", "ols": "mondo", "obo": "mondo", "publications": [ { "title": "Mondo: Unifying diseases for the world, by the world", "doi": "10.1101/2022.04.13.22273750", "year": 2022 } ], "usedBy": [ { "name": "CELLxGENE", "url": "https://cellxgene.cziscience.com/", "note": "Disease annotation of datasets" } ], "tags": [ "disease", "neurology", "OBO Foundry" ], "url": "https://neuroschema.org/o/mondo/", "evaluation": { "links": { "homepage": { "url": "https://mondo.monarchinitiative.org/", "code": 200, "state": "ok", "lastModified": "2026-10-06T23:13:19.000Z", "checkedAt": "2026-10-25T19:10:23.533Z" }, "repository": { "url": "https://github.com/monarch-initiative/mondo", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:23.396Z" }, "download": { "url": "http://purl.obolibrary.org/obo/mondo.owl", "code": 200, "state": "ok", "resolvedUrl": "https://release-assets.githubusercontent.com/github-production-release-asset/104242311/628282b2-51a5-4d4e-beeb-122cde75fd5b?sp=r&sv=2018-11-09&sr=b&spr=https&se=2026-10-25T19%3A53%3A48Z&rscd=attachment%3B+filename%3Dmondo.owl&rsct=application%2Foctet-stream&skoid=96c2d410-5711-43a1-aedd-ab1947aa7ab0&sktid=398a6654-997b-47e9-b12b-9515b896b4de&skt=2026-10-25T18%3A53%3A32Z&ske=2026-10-25T19%3A53%3A48Z&sks=b&skv=2018-11-09&sig=3d%2FuE2pbABLKQNic76WO%2BuF9ltXbJNkXAqNtao8E4iQ%3D&jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmVsZWFzZS1hc3NldHMuZ2l0aHVidXNlcmNvbnRlbnQuY29tIiwia2V5Ijoia2V5MSIsImV4cCI6MTc5Mjk1OTAyMywibmJmIjoxNzkyOTU1NDIzLCJwYXRoIjoicmVsZWFzZWFzc2V0cHJvZHVjdGlvbi5ibG9iLmNvcmUud2luZG93cy5uZXQifQ.rBi2hN-LT8Q9nE4MFHmC1Dn0Wex87Q4yUbYgn2oFFQE&response-content-disposition=attachment%3B%20filename%3Dmondo.owl&response-content-type=application%2Foctet-stream", "lastModified": "2026-10-06T19:54:26.000Z", "checkedAt": "2026-10-25T19:10:23.438Z" } }, "github": { "slug": "monarch-initiative/mondo", "stars": 327, "forks": 65, "openIssues": 517, "pushedAt": "2026-10-23T18:36:36Z", "archived": false, "license": "CC-BY-4.0", "latestRelease": { "tag": "v2026-10-06", "date": "2026-10-06T19:55:40Z", "url": "https://github.com/monarch-initiative/mondo/releases/tag/v2026-10-06" }, "source": "https://api.github.com/repos/monarch-initiative/mondo", "fetchedAt": "2026-10-25T19:10:23.570Z" }, "ols": { "portal": "OLS (EMBL-EBI)", "id": "mondo", "api": "v2", "title": "Mondo Disease Ontology", "iri": "http://purl.obolibrary.org/obo/mondo/mondo-international.owl", "versionIri": "http://purl.obolibrary.org/obo/mondo/releases/2026-10-06/mondo-international.owl", "version": "2026-10-06", "releaseDate": "2026-10-06", "terms": 63511, "properties": 494, "individuals": 18, "importsFrom": [ "bfo", "bspo", "chebi", "cl", "dc", "dcterms", "ecto", "envo", "foodon", "go", "hp", "hsapdv", "iao", "maxo", "mf", "mfomd", "nbo", "ncbitaxon", "ncit", "oio", "omo", "owl", "pato", "rdfs", "ro", "semapv", "skos", "so", "uberon" ], "exportsTo": [ "ado", "afo", "bmont", "clo", "coho", "covoc", "cpont", "duo", "efo", "epio", "gecko", "genepio", "hcao", "ico", "oba", "ohmi", "ons", "oostt", "opmi", "pride", "vo" ], "languages": [ "en", "ja" ], "loaded": "2026-10-25T00:09:57.985489912", "sourceFileTimestamp": "Sun Oct 25 00:09:44 UTC 2026", "obsolete": false, "status": "LOADED", "page": "https://www.ebi.ac.uk/ols4/ontologies/mondo", "source": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/mondo", "fetchedAt": "2026-10-25T19:10:23.170Z" }, "obo": { "id": "mondo", "status": "active", "domain": "health", "license": "CC BY 4.0", "usages": [ { "user": "https://monarchinitiative.org/", "type": "annotation", "description": "Mondo is used by the Monarch Initiative for disease annotations." }, { "user": "https://www.clinicalgenome.org/", "type": "annotation", "description": "Mondo is used by the ClinGen for disease curations." }, { "user": "https://portal.kidsfirstdrc.org/", "type": "annotation", "description": "Mondo is used by the Kids First Data Resource Portal for disease annotations. Note, a login is needed to access the portal and view the Mondo-curated data." }, { "user": "https://www.ancestry.com/", "type": "annotation", "description": "Mondo is used by the Ancestory for some disease curations." }, { "user": "https://www.humancellatlas.org/", "type": "annotation", "description": "Mondo is used by the Human Cell Atlas for some disease annotations." } ], "source": "https://obofoundry.org/registry/ontologies.jsonld", "fetchedAt": "2026-10-25T19:10:17.692Z" }, "bioportal": null, "citations": [ { "doi": "10.1101/2022.04.13.22273750", "count": 91, "source": "https://api.crossref.org/works/10.1101%2F2022.04.13.22273750", "fetchedAt": "2026-10-25T19:10:23.060Z" } ], "git": { "commit": "a645ab571f5b0881a184c28b84d0f9050432dc53", "ref": "master", "headTag": null, "latestTag": { "name": "v2026-10-06", "commit": "9bfccbe9217cdfa6a225058bfa6e4bd55512b432", "url": "https://github.com/monarch-initiative/mondo/releases/tag/v2026-10-06" }, "tagCount": 127, "tagDates": [ "2017-10-18", "2017-11-10", "2017-12-15", "2018-01-05", "2018-02-19", "2018-04-15", "2018-04-29", "2018-05-18", "2018-05-20", "2018-05-29", "2018-06-01", "2018-06-08", "2018-06-25", "2018-07-16", "2018-08-03", "2018-08-19", "2018-08-24", "2018-09-04", "2018-09-10", "2018-09-26", "2018-10-14", "2018-10-26", "2018-11-01", "2018-11-21", "2018-11-30", "2018-12-02", "2019-04-06", "2019-04-29", "2019-05-28", "2019-06-29", "2019-07-28", "2019-08-28", "2019-09-30", "2019-10-25", "2019-11-25", "2020-01-27", "2020-03-05", "2020-04-05", "2020-04-29", "2020-06-01", "2020-06-30", "2020-08-10", "2020-08-13", "2020-09-00", "2020-09-01", "2020-09-09", "2020-09-14", "2020-10-03", "2020-10-21", "2020-11-06", "2020-12-02", "2020-12-18", "2021-01-15", "2021-01-29", "2021-03-03", "2021-04-07", "2021-04-30", "2021-06-01", "2021-07-12", "2021-08-02", "2021-08-03", "2021-08-11", "2021-09-01", "2021-10-01", "2021-11-01", "2021-11-07", "2021-12-01", "2021-12-30", "2022-02-04", "2022-03-01", "2022-04-04", "2022-05-02", "2022-06-01", "2022-07-01", "2022-08-01", "2022-09-06", "2022-10-03", "2022-10-11", "2022-11-01", "2022-12-01", "2023-01-04", "2023-02-06", "2023-03-01", "2023-04-04", "2023-05-01", "2023-06-01", "2023-07-03", "2023-08-02", "2023-09-12", "2023-12-12", "2024-01-03", "2024-02-06", "2024-03-04", "2024-04-02", "2024-05-08", "2024-06-04", "2024-07-02", "2024-08-06", "2024-09-03", "2024-10-01", "2024-11-05", "2024-12-03", "2025-01-07", "2025-02-04", "2025-03-04", "2025-04-01", "2025-05-06", "2025-06-03", "2025-07-01", "2025-08-05", "2025-09-02", "2025-10-07", "2025-11-04", "2025-12-02", "2026-01-06", "2026-02-03", "2026-03-03", "2026-04-07", "2026-05-05", "2026-06-02", "2026-07-06", "2026-08-04", "2026-09-01", "2026-10-06" ], "url": "https://github.com/monarch-initiative/mondo/tree/a645ab571f5b0881a184c28b84d0f9050432dc53", "source": "https://github.com/monarch-initiative/mondo.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:23.368Z" }, "tib": null, "dashboard": { "ns": "mondo", "checks": { "FP01 Open": "PASS", "FP02 Common Format": "PASS", "FP03 URIs": "PASS", "FP04 Versioning": "PASS", "FP05 Scope": "PASS", "FP06 Textual Definitions": "WARN", "FP07 Relations": "INFO", "FP08 Documented": "PASS", "FP09 Plurality of Users": "PASS", "FP11 Locus of Authority": "PASS", "FP12 Naming Conventions": "PASS", "FP16 Maintenance": "PASS", "FP20 Responsiveness": "PASS", "ROBOT Report": "WARN" }, "robot": { "ERROR": 0, "INFO": 3, "WARN": 22986 }, "consistent": true, "unsatisfiable": 0, "classes": 44290, "axioms": 719628, "owl2dl": true, "reusedPct": 18.62, "usedBy": [ "clo", "duo", "gecko", "oba", "ohmi", "oostt", "opmi", "vo" ], "oboScore": 0.495, "summary": "WARN", "checkedVersion": "http://purl.obolibrary.org/obo/mondo/releases/2026-09-01/mondo-base.owl", "checkedAt": "2026-09-16T19:56:25.030Z", "page": "https://dashboard.obofoundry.org/dashboard/mondo/dashboard.html", "source": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "fetchedAt": "2026-10-25T19:10:20.368Z" }, "quality": null, "oops": { "error": "fetch failed", "checkedAt": "2026-10-25T19:08:45.521Z", "source": "data/quality/mondo.json" }, "releases": { "dates": [ "2024-11-05", "2024-12-03", "2025-01-07", "2025-02-04", "2025-03-04", "2025-04-02", "2025-05-06", "2025-06-03", "2025-07-01", "2025-08-05", "2025-09-02", "2025-10-07", "2025-11-04", "2025-12-02", "2026-01-06", "2026-02-03", "2026-03-03", "2026-04-07", "2026-05-05", "2026-06-02", "2026-07-07", "2026-08-04", "2026-09-01", "2026-10-06" ], "lastYear": 12, "from": "GitHub releases" }, "bioregistry": { "prefix": "mondo", "name": "Mondo Disease Ontology", "mappings": { "aberowl": "MONDO", "bartoc": "20699", "biocontext": "MONDO", "bioportal": "MONDO", "fairsharing": "FAIRsharing.b2979t", "integbio": "nbdc02563", "miriam": "mondo", "obofoundry": "mondo", "ols": "mondo", "ontobee": "MONDO", "togoid": "Mondo", "wikidata.entity": "Q27468140", "wikidata.property": "P5270" }, "dependsOn": [], "appearsIn": [], "license": "CC-BY-4.0", "version": "2026-10-06", "deprecated": false, "page": "https://bioregistry.io/mondo", "source": "https://bioregistry.io/api/registry/mondo", "fetchedAt": "2026-10-25T19:10:22.989Z" }, "artifact": { "source": "https://release-assets.githubusercontent.com/github-production-release-asset/104242311/628282b2-51a5-4d4e-beeb-122cde75fd5b?sp=r&sv=2018-11-09&sr=b&spr=https&se=2026-10-25T19%3A53%3A48Z&rscd=attachment%3B+filename%3Dmondo.owl&rsct=application%2Foctet-stream&skoid=96c2d410-5711-43a1-aedd-ab1947aa7ab0&sktid=398a6654-997b-47e9-b12b-9515b896b4de&skt=2026-10-25T18%3A53%3A32Z&ske=2026-10-25T19%3A53%3A48Z&sks=b&skv=2018-11-09&sig=3d%2FuE2pbABLKQNic76WO%2BuF9ltXbJNkXAqNtao8E4iQ%3D&jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmVsZWFzZS1hc3NldHMuZ2l0aHVidXNlcmNvbnRlbnQuY29tIiwia2V5Ijoia2V5MSIsImV4cCI6MTc5Mjk1OTAyMywibmJmIjoxNzkyOTU1NDIzLCJwYXRoIjoicmVsZWFzZWFzc2V0cHJvZHVjdGlvbi5ibG9iLmNvcmUud2luZG93cy5uZXQifQ.rBi2hN-LT8Q9nE4MFHmC1Dn0Wex87Q4yUbYgn2oFFQE&response-content-disposition=attachment%3B%20filename%3Dmondo.owl&response-content-type=application%2Foctet-stream", "versionIri": "http://purl.obolibrary.org/obo/mondo/releases/2026-10-06/mondo.owl", "etag": "\"0x8DF23E3A07E3225\"", "contentType": "application/octet-stream", "fetchedAt": "2026-10-25T19:10:23.449Z" }, "score": 94, "gross": 94, "earned": 94, "possible": 100, "qualityApplies": true, "penalty": { "score": 0, "reason": "active (last activity 2026-10-23)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.0 years → 4 × max(0, 0.0 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "A", "fair": 48, "breakdown": { "findable": { "score": 12, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 4, "max": 4, "detail": "purl.obolibrary.org" }, { "label": "Indexed in services (F4)", "pts": 5, "max": 5, "detail": "5: OLS, BioPortal, OBO Foundry, Bioregistry, FAIRsharing" }, { "label": "Citable reference (F2)", "pts": 3, "max": 3, "detail": "doi:10.1101/2022.04.13.22273750" } ], "notes": [] }, "accessible": { "score": 12, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "download HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 3, "max": 3, "detail": "OBO Foundry, Bioregistry" } ], "notes": [] }, "interoperable": { "score": 12, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL, OBO" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL, OBO" }, { "label": "References other vocabularies (I3)", "pts": 4, "max": 4, "detail": "imports 23: bfo, bspo, chebi, cl, ecto, envo, foodon, go…" } ], "notes": [] }, "reusable": { "score": 12, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "CC BY 4.0" }, { "label": "Release provenance (R1.2)", "pts": 4, "max": 4, "detail": "2026-10-06 (version IRI in the artefact)" }, { "label": "Community standards (R1.3)", "pts": 3, "max": 3, "detail": "OBO principles: 11/13 checks pass" } ], "notes": [] }, "quality": { "score": 18, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 4, "max": 4, "detail": "imports BFO" }, { "label": "Standard relations (RO)", "pts": 2, "max": 2, "detail": "imports RO" }, { "label": "Logical consistency", "pts": 6, "max": 6, "detail": "consistent, 0 unsatisfiable classes (OBO Dashboard)" }, { "label": "ROBOT report: no errors", "pts": 2, "max": 2, "detail": "0 errors" }, { "label": "ROBOT report: warning density", "pts": 0, "max": 2, "detail": "22986 warnings / 44290 classes = 0.52" }, { "label": "Scaled 14/16 → 20", "pts": 4, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "ROBOT report: warning density: 22986 warnings / 44290 classes = 0.52", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 16, "max": 16, "steps": [ { "label": "Recency", "pts": 10, "max": 10, "detail": "2026-10-23 → 0.1 months (≤ 3 months)" }, { "label": "Release cadence (12 months)", "pts": 6, "max": 6, "detail": "12 releases (GitHub releases)" } ], "notes": [] }, "adoption": { "score": 12, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 5, "max": 7, "detail": "6 projects" }, { "label": "Reused by other ontologies", "pts": 3, "max": 4, "detail": "21: clo, duo, gecko, oba, ohmi, oostt…" }, { "label": "Community signal", "pts": 4, "max": 5, "detail": "max(stars 327 → 4, citations 91 → 2)" } ], "notes": [ "Documented adopting projects: 6 projects", "Reused by other ontologies: 21: clo, duo, gecko, oba, ohmi, oostt…", "Community signal: max(stars 327 → 4, citations 91 → 2)" ] } }, "lastActivity": "2026-10-23T18:36:36Z", "adopterCount": 6, "reuseCount": 21, "importCount": 23, "registries": [ "OLS", "BioPortal", "OBO Foundry", "Bioregistry", "FAIRsharing" ], "evaluatedVersion": { "label": "2026-10-06", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/mondo/releases/2026-10-06/mondo.owl", "inArtefact": true, "all": [ { "label": "2026-10-06", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/mondo/releases/2026-10-06/mondo.owl", "inArtefact": true }, { "label": "2026-10-06", "from": "OLS", "value": "http://purl.obolibrary.org/obo/mondo/releases/2026-10-06/mondo-international.owl" }, { "label": "v2026-10-06", "from": "latest GitHub release", "value": "https://github.com/monarch-initiative/mondo/releases/tag/v2026-10-06" }, { "label": "v2026-10-06 + commit a645ab5", "from": "latest release tag; master evaluated at commit", "value": "a645ab571f5b0881a184c28b84d0f9050432dc53", "release": "v2026-10-06" }, { "label": "commit a645ab5", "from": "master at evaluation time", "value": "a645ab571f5b0881a184c28b84d0f9050432dc53" }, { "label": "file of 2026-10-06", "from": "Last-Modified of the download", "value": "2026-10-06T19:54:26.000Z" } ] }, "evaluatedAt": "2026-10-25T19:10:25.719Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "CELLxGENE", "url": "https://cellxgene.cziscience.com/", "note": "Disease annotation of datasets", "source": "curated" }, { "name": "monarchinitiative.org", "url": "https://monarchinitiative.org/", "note": "Mondo is used by the Monarch Initiative for disease annotations.", "source": "OBO Foundry registry" }, { "name": "clinicalgenome.org", "url": "https://www.clinicalgenome.org/", "note": "Mondo is used by the ClinGen for disease curations.", "source": "OBO Foundry registry" }, { "name": "portal.kidsfirstdrc.org", "url": "https://portal.kidsfirstdrc.org/", "note": "Mondo is used by the Kids First Data Resource Portal for disease annotations. Note, a login is needed to access the portal and view the Mondo-curated data.", "source": "OBO Foundry registry" }, { "name": "ancestry.com", "url": "https://www.ancestry.com/", "note": "Mondo is used by the Ancestory for some disease curations.", "source": "OBO Foundry registry" }, { "name": "humancellatlas.org", "url": "https://www.humancellatlas.org/", "note": "Mondo is used by the Human Cell Atlas for some disease annotations.", "source": "OBO Foundry registry" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 100, "grade": "A", "fair": null, "version": "2026-10-06", "terms": 63511, "stars": 327, "license": "CC BY 4.0", "lastActivity": "2026-10-23T18:36:36Z", "adopters": 6, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 100, "grade": "A", "fair": 60, "version": "2026-10-06", "terms": 63511, "stars": 327, "license": "CC BY 4.0", "lastActivity": "2026-10-23T18:36:36Z", "adopters": 6, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 100, "grade": "A", "fair": 60, "version": "2026-10-06", "terms": 63511, "stars": 327, "license": "CC BY 4.0", "lastActivity": "2026-10-23T18:36:36Z", "adopters": 6, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 94, "grade": "A", "fair": 48, "version": "2026-10-06", "terms": 63511, "stars": 327, "license": "CC BY 4.0", "lastActivity": "2026-10-23T18:36:36Z", "adopters": 6, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 94, "grade": "A", "fair": 48, "version": "2026-10-06", "terms": 63511, "stars": 327, "license": "CC BY 4.0", "lastActivity": "2026-10-23T18:36:36Z", "adopters": 6, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 95, "grade": "A", "fair": 48, "version": "2026-10-06", "terms": 63511, "stars": 327, "license": "CC BY 4.0", "lastActivity": "2026-10-23T18:36:36Z", "adopters": 6, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 94 → 95 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 100 → 94 · rubric v2.2 → v3.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/mondo/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "http://purl.obolibrary.org/obo/mondo.owl", "neuroschema:evaluatedVersion": "http://purl.obolibrary.org/obo/mondo/releases/2026-10-06/mondo.owl" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://mondo.monarchinitiative.org/", "prov:atTime": "2026-10-25T19:10:23.533Z" }, { "@id": "https://github.com/monarch-initiative/mondo", "prov:atTime": "2026-10-25T19:10:23.396Z" }, { "@id": "http://purl.obolibrary.org/obo/mondo.owl", "prov:atTime": "2026-10-25T19:10:23.438Z" }, { "@id": "https://release-assets.githubusercontent.com/github-production-release-asset/104242311/628282b2-51a5-4d4e-beeb-122cde75fd5b?sp=r&sv=2018-11-09&sr=b&spr=https&se=2026-10-25T19%3A53%3A48Z&rscd=attachment%3B+filename%3Dmondo.owl&rsct=application%2Foctet-stream&skoid=96c2d410-5711-43a1-aedd-ab1947aa7ab0&sktid=398a6654-997b-47e9-b12b-9515b896b4de&skt=2026-10-25T18%3A53%3A32Z&ske=2026-10-25T19%3A53%3A48Z&sks=b&skv=2018-11-09&sig=3d%2FuE2pbABLKQNic76WO%2BuF9ltXbJNkXAqNtao8E4iQ%3D&jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmVsZWFzZS1hc3NldHMuZ2l0aHVidXNlcmNvbnRlbnQuY29tIiwia2V5Ijoia2V5MSIsImV4cCI6MTc5Mjk1OTAyMywibmJmIjoxNzkyOTU1NDIzLCJwYXRoIjoicmVsZWFzZWFzc2V0cHJvZHVjdGlvbi5ibG9iLmNvcmUud2luZG93cy5uZXQifQ.rBi2hN-LT8Q9nE4MFHmC1Dn0Wex87Q4yUbYgn2oFFQE&response-content-disposition=attachment%3B%20filename%3Dmondo.owl&response-content-type=application%2Foctet-stream", "prov:atTime": "2026-10-25T19:10:23.449Z" }, { "@id": "https://github.com/monarch-initiative/mondo.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:23.368Z" }, { "@id": "https://api.github.com/repos/monarch-initiative/mondo", "prov:atTime": "2026-10-25T19:10:23.570Z" }, { "@id": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/mondo", "prov:atTime": "2026-10-25T19:10:23.170Z" }, { "@id": "https://obofoundry.org/registry/ontologies.jsonld", "prov:atTime": "2026-10-25T19:10:17.692Z" }, { "@id": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "prov:atTime": "2026-10-25T19:10:20.368Z" }, { "@id": "https://bioregistry.io/api/registry/mondo", "prov:atTime": "2026-10-25T19:10:22.989Z" }, { "@id": "https://api.crossref.org/works/10.1101%2F2022.04.13.22273750", "prov:atTime": "2026-10-25T19:10:23.060Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:25.719Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#mondo" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#mondo" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#mondo" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#mondo" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#mondo" } ] } }, { "id": "hp", "acronym": "HPO", "name": "Human Phenotype Ontology", "category": "disease", "kind": "ontology", "description": "Standard vocabulary of phenotypic abnormalities in human disease, with a large nervous system abnormality branch used in rare-disease diagnostics.", "formats": [ "OWL", "OBO", "JSON" ], "species": [ "Human" ], "maintainer": "HPO consortium / Monarch Initiative", "homepage": "https://hpo.jax.org/", "repository": "https://github.com/obophenotype/human-phenotype-ontology", "download": "http://purl.obolibrary.org/obo/hp.owl", "ols": "hp", "obo": "hp", "publications": [ { "title": "The Human Phenotype Ontology in 2021", "doi": "10.1093/nar/gkaa1043", "year": 2021 } ], "usedBy": [ { "name": "Genomics England", "url": "https://www.genomicsengland.co.uk/", "note": "Phenotyping in rare-disease programmes" } ], "tags": [ "phenotype", "clinical", "rare disease", "OBO Foundry" ], "url": "https://neuroschema.org/o/hp/", "evaluation": { "links": { "homepage": { "url": "https://hpo.jax.org/", "code": 200, "state": "ok", "lastModified": "2026-03-04T19:14:14.000Z", "checkedAt": "2026-10-25T19:10:23.720Z" }, "repository": { "url": "https://github.com/obophenotype/human-phenotype-ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:23.887Z" }, "download": { "url": "http://purl.obolibrary.org/obo/hp.owl", "code": 200, "state": "ok", "resolvedUrl": "https://release-assets.githubusercontent.com/github-production-release-asset/41063438/f576a2b7-15d0-4bde-a12b-37f8bc94a060?sp=r&sv=2018-11-09&sr=b&spr=https&se=2026-10-25T19%3A57%3A49Z&rscd=attachment%3B+filename%3Dhp.owl&rsct=application%2Foctet-stream&skoid=96c2d410-5711-43a1-aedd-ab1947aa7ab0&sktid=398a6654-997b-47e9-b12b-9515b896b4de&skt=2026-10-25T18%3A56%3A50Z&ske=2026-10-25T19%3A57%3A49Z&sks=b&skv=2018-11-09&sig=8j%2F2%2BoL%2BdIS%2FnPgQKPHi4Hf6mcYMMZ35lpjgkL2z8Kg%3D&jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmVsZWFzZS1hc3NldHMuZ2l0aHVidXNlcmNvbnRlbnQuY29tIiwia2V5Ijoia2V5MSIsImV4cCI6MTc5Mjk1NzIyMywibmJmIjoxNzkyOTU1NDIzLCJwYXRoIjoicmVsZWFzZWFzc2V0cHJvZHVjdGlvbi5ibG9iLmNvcmUud2luZG93cy5uZXQifQ.shs8FvOY2G60LPy4k0K8P1kNVCcmicFN_ipUuIe2yRE&response-content-disposition=attachment%3B%20filename%3Dhp.owl&response-content-type=application%2Foctet-stream", "lastModified": "2026-09-02T21:13:46.000Z", "checkedAt": "2026-10-25T19:10:23.862Z" } }, "github": { "slug": "obophenotype/human-phenotype-ontology", "stars": 380, "forks": 71, "openIssues": 168, "pushedAt": "2026-10-24T14:07:32Z", "archived": false, "license": null, "latestRelease": { "tag": "v2026-09-01", "date": "2026-09-03T06:08:39Z", "url": "https://github.com/obophenotype/human-phenotype-ontology/releases/tag/v2026-09-01" }, "source": "https://api.github.com/repos/obophenotype/human-phenotype-ontology", "fetchedAt": "2026-10-25T19:10:24.070Z" }, "ols": { "portal": "OLS (EMBL-EBI)", "id": "hp", "api": "v2", "title": "Human Phenotype Ontology (HPO)", "iri": "http://purl.obolibrary.org/obo/hp/hp-international.owl", "versionIri": "http://purl.obolibrary.org/obo/hp/releases/2026-09-01/hp-international.owl", "version": "2026-09-01", "releaseDate": "2026-09-01", "terms": 32772, "properties": 373, "individuals": 0, "importsFrom": [ "bspo", "chebi", "cl", "dc", "dcterms", "go", "hsapdv", "iao", "mpath", "nbo", "oio", "omo", "owl", "pato", "pr", "rdfs", "ro", "uberon" ], "exportsTo": [ "ado", "aro", "bmont", "chiro", "cido", "coho", "covoc", "cpont", "doid", "efo", "enm", "epio", "eupath", "exmo", "genepio", "geno", "gsso", "htn", "maxo", "mondo", "oba", "obi", "ohmi", "one", "ons", "ontoneo", "oostt", "opmi", "pride", "scdo", "txpo", "upheno", "valuesets" ], "languages": [ "cs", "de", "dtp", "en", "es", "fr", "it", "ja", "nl", "nna", "pt", "tr", "tw", "zh" ], "loaded": "2026-10-25T00:12:44.116457561", "sourceFileTimestamp": "Sun Oct 25 00:12:33 UTC 2026", "obsolete": false, "status": "LOADED", "page": "https://www.ebi.ac.uk/ols4/ontologies/hp", "source": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/hp", "fetchedAt": "2026-10-25T19:10:23.766Z" }, "obo": { "id": "hp", "status": "active", "domain": "phenotype", "license": "hpo", "usages": [ { "user": "https://monarchinitiative.org/", "type": "annotation", "description": "HPO is used by the Monarch Initiative for phenotype annotations." } ], "source": "https://obofoundry.org/registry/ontologies.jsonld", "fetchedAt": "2026-10-25T19:10:17.692Z" }, "bioportal": null, "citations": [ { "doi": "10.1093/nar/gkaa1043", "count": 1185, "source": "https://api.crossref.org/works/10.1093%2Fnar%2Fgkaa1043", "fetchedAt": "2026-10-25T19:10:23.555Z" } ], "git": { "commit": "f71bdf9e3ea719fba47fa05c1016b56bd9d8941d", "ref": "master", "headTag": null, "latestTag": { "name": "v2026-09-01", "commit": "920d4eb3608b50a2c19ddb10290224ab35a759c5", "url": "https://github.com/obophenotype/human-phenotype-ontology/releases/tag/v2026-09-01" }, "tagCount": 70, "tagDates": [ "2017-03-09", "2017-04-13", "2017-06-22", "2017-06-30", "2017-10-05", "2017-12-12", "2018-01-26", "2018-03-08", "2018-06-13", "2018-07-25", "2018-10-09", "2018-12-21", "2019-02-12", "2019-04-15", "2019-06-03", "2019-09-06", "2019-11-08", "2020-02-27", "2020-03-27", "2020-06-08", "2020-08-11", "2020-10-12", "2020-12-07", "2021-02-08", "2021-04-13", "2021-06-08", "2021-06-13", "2021-08-02", "2021-10-10", "2022-01-27", "2022-02-14", "2022-04-14", "2022-06-11", "2022-10-05", "2022-12-15", "2023-01-27", "2023-04-05", "2023-06-06", "2023-06-17", "2023-07-21", "2023-09-01", "2023-10-09", "2024-01-11", "2024-01-16", "2024-02-08", "2024-03-06", "2024-04-03", "2024-04-04", "2024-04-19", "2024-04-26", "2024-06-25", "2024-07-01", "2024-08-13", "2024-12-12", "2025-01-16", "2025-03-03", "2025-05-06", "2025-08-11", "2025-09-01", "2025-10-22", "2025-11-24", "2026-01-08", "2026-02-16", "2026-06-06", "2026-06-23", "2026-09-01" ], "url": "https://github.com/obophenotype/human-phenotype-ontology/tree/f71bdf9e3ea719fba47fa05c1016b56bd9d8941d", "source": "https://github.com/obophenotype/human-phenotype-ontology.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:23.554Z" }, "tib": { "portal": "TIB Terminology Service", "id": "hp", "api": "v1", "title": "Human Phenotype Ontology", "iri": "http://purl.obolibrary.org/obo/hp.owl", "versionIri": "http://purl.obolibrary.org/obo/hp/releases/2025-10-22/hp.owl", "version": "2025-10-22", "releaseDate": "2025-10-22", "terms": 31904, "properties": 361, "individuals": 0, "importsFrom": [], "exportsTo": [], "languages": [], "loaded": "2025-10-24T22:13:14.790+0000", "status": "SKIP", "page": "https://service.tib.eu/ts4tib/ontologies/hp", "source": "https://service.tib.eu/ts4tib/api/ontologies/hp", "fetchedAt": "2026-10-25T19:10:24.898Z" }, "dashboard": { "ns": "hp", "checks": { "FP01 Open": "WARN", "FP02 Common Format": "PASS", "FP03 URIs": "PASS", "FP04 Versioning": "PASS", "FP05 Scope": "PASS", "FP06 Textual Definitions": "WARN", "FP07 Relations": "PASS", "FP08 Documented": "PASS", "FP09 Plurality of Users": "PASS", "FP11 Locus of Authority": "PASS", "FP12 Naming Conventions": "PASS", "FP16 Maintenance": "PASS", "FP20 Responsiveness": "PASS", "ROBOT Report": "WARN" }, "robot": { "ERROR": 0, "INFO": 9, "WARN": 3448 }, "consistent": true, "unsatisfiable": 0, "classes": 22670, "axioms": 178039, "owl2dl": true, "reusedPct": 9.85, "usedBy": [ "cido", "doid", "gsso", "htn", "maxo", "mondo", "oba", "obi", "ons", "scdo", "txpo" ], "oboScore": 0.495, "summary": "WARN", "checkedVersion": "http://purl.obolibrary.org/obo/hp/releases/2026-09-01/hp-base.owl", "checkedAt": "2026-09-16T20:08:26.997Z", "page": "https://dashboard.obofoundry.org/dashboard/hp/dashboard.html", "source": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "fetchedAt": "2026-10-25T19:10:20.368Z" }, "quality": null, "oops": { "error": "fetch failed", "checkedAt": "2026-10-25T19:08:56.014Z", "source": "data/quality/hp.json" }, "releases": { "dates": [ "2024-01-16", "2024-02-08", "2024-03-06", "2024-04-03", "2024-04-04", "2024-04-19", "2024-04-26", "2024-06-25", "2024-07-01", "2024-08-13", "2024-12-12", "2025-01-16", "2025-03-03", "2025-05-06", "2025-08-11", "2025-09-02", "2025-10-22", "2025-11-25", "2026-01-08", "2026-02-16", "2026-06-08", "2026-06-23", "2026-09-01", "2026-09-03" ], "lastYear": 7, "from": "GitHub releases" }, "bioregistry": { "prefix": "hp", "name": "Human Phenotype Ontology", "mappings": { "aberowl": "HPO", "bartoc": "1937", "biocontext": "HPO", "bioportal": "HP", "fairsharing": "FAIRsharing.kbtt7f", "hl7": "6.339", "integbio": "nbdc02559", "miriam": "hp", "n2t": "hp", "obofoundry": "hp", "ols": "hp", "ontobee": "HP", "tib.ts": "hp", "wikidata.entity": "Q17027854", "wikidata.property": "P3841" }, "dependsOn": [], "appearsIn": [ "chiro", "maxo", "scdo" ], "license": "hpo", "version": "2026-09-01", "deprecated": false, "page": "https://bioregistry.io/hp", "source": "https://bioregistry.io/api/registry/hp", "fetchedAt": "2026-10-25T19:10:23.441Z" }, "artifact": { "source": "https://release-assets.githubusercontent.com/github-production-release-asset/41063438/f576a2b7-15d0-4bde-a12b-37f8bc94a060?sp=r&sv=2018-11-09&sr=b&spr=https&se=2026-10-25T19%3A57%3A49Z&rscd=attachment%3B+filename%3Dhp.owl&rsct=application%2Foctet-stream&skoid=96c2d410-5711-43a1-aedd-ab1947aa7ab0&sktid=398a6654-997b-47e9-b12b-9515b896b4de&skt=2026-10-25T18%3A56%3A50Z&ske=2026-10-25T19%3A57%3A49Z&sks=b&skv=2018-11-09&sig=8j%2F2%2BoL%2BdIS%2FnPgQKPHi4Hf6mcYMMZ35lpjgkL2z8Kg%3D&jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmVsZWFzZS1hc3NldHMuZ2l0aHVidXNlcmNvbnRlbnQuY29tIiwia2V5Ijoia2V5MSIsImV4cCI6MTc5Mjk1NzIyMywibmJmIjoxNzkyOTU1NDIzLCJwYXRoIjoicmVsZWFzZWFzc2V0cHJvZHVjdGlvbi5ibG9iLmNvcmUud2luZG93cy5uZXQifQ.shs8FvOY2G60LPy4k0K8P1kNVCcmicFN_ipUuIe2yRE&response-content-disposition=attachment%3B%20filename%3Dhp.owl&response-content-type=application%2Foctet-stream", "versionIri": "http://purl.obolibrary.org/obo/hp/releases/2026-09-01/hp.owl", "etag": "\"0x8DF093713401D6C\"", "contentType": "application/octet-stream", "fetchedAt": "2026-10-25T19:10:23.868Z" }, "score": 86, "gross": 86, "earned": 86, "possible": 100, "qualityApplies": true, "penalty": { "score": 0, "reason": "active (last activity 2026-10-24)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.0 years → 4 × max(0, 0.0 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "A", "fair": 45, "breakdown": { "findable": { "score": 12, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 4, "max": 4, "detail": "purl.obolibrary.org" }, { "label": "Indexed in services (F4)", "pts": 5, "max": 5, "detail": "6: OLS, TIB, BioPortal, OBO Foundry, Bioregistry, FAIRsharing" }, { "label": "Citable reference (F2)", "pts": 3, "max": 3, "detail": "doi:10.1093/nar/gkaa1043" } ], "notes": [] }, "accessible": { "score": 12, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "download HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 3, "max": 3, "detail": "OBO Foundry, Bioregistry" } ], "notes": [] }, "interoperable": { "score": 12, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL, OBO" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL, OBO" }, { "label": "References other vocabularies (I3)", "pts": 4, "max": 4, "detail": "imports 13: bspo, chebi, cl, go, hsapdv, iao, mpath, nbo…" } ], "notes": [] }, "reusable": { "score": 9, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 2, "max": 5, "detail": "hpo (not a recognised open license)" }, { "label": "Release provenance (R1.2)", "pts": 4, "max": 4, "detail": "2026-09-01 (version IRI in the artefact)" }, { "label": "Community standards (R1.3)", "pts": 3, "max": 3, "detail": "OBO principles: 11/13 checks pass" } ], "notes": [ "Clear license (R1.1): hpo (not a recognised open license)" ] }, "quality": { "score": 14, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 0, "max": 4, "detail": "no BFO/COB/DOLCE import found" }, { "label": "Standard relations (RO)", "pts": 2, "max": 2, "detail": "imports RO" }, { "label": "Logical consistency", "pts": 6, "max": 6, "detail": "consistent, 0 unsatisfiable classes (OBO Dashboard)" }, { "label": "ROBOT report: no errors", "pts": 2, "max": 2, "detail": "0 errors" }, { "label": "ROBOT report: warning density", "pts": 1, "max": 2, "detail": "3448 warnings / 22670 classes = 0.15" }, { "label": "Scaled 11/16 → 20", "pts": 3, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "Upper-ontology alignment: no BFO/COB/DOLCE import found", "ROBOT report: warning density: 3448 warnings / 22670 classes = 0.15", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 16, "max": 16, "steps": [ { "label": "Recency", "pts": 10, "max": 10, "detail": "2026-10-24 → 0.0 months (≤ 3 months)" }, { "label": "Release cadence (12 months)", "pts": 6, "max": 6, "detail": "7 releases (GitHub releases)" } ], "notes": [] }, "adoption": { "score": 11, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "2 projects" }, { "label": "Reused by other ontologies", "pts": 4, "max": 4, "detail": "33: cido, doid, gsso, htn, maxo, mondo…" }, { "label": "Community signal", "pts": 5, "max": 5, "detail": "max(stars 380 → 4, citations 1185 → 5)" } ], "notes": [ "Documented adopting projects: 2 projects" ] } }, "lastActivity": "2026-10-24T14:07:32Z", "adopterCount": 2, "reuseCount": 33, "importCount": 13, "registries": [ "OLS", "TIB", "BioPortal", "OBO Foundry", "Bioregistry", "FAIRsharing" ], "evaluatedVersion": { "label": "2026-09-01", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/hp/releases/2026-09-01/hp.owl", "inArtefact": true, "all": [ { "label": "2026-09-01", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/hp/releases/2026-09-01/hp.owl", "inArtefact": true }, { "label": "2026-09-01", "from": "OLS", "value": "http://purl.obolibrary.org/obo/hp/releases/2026-09-01/hp-international.owl" }, { "label": "v2026-09-01", "from": "latest GitHub release", "value": "https://github.com/obophenotype/human-phenotype-ontology/releases/tag/v2026-09-01" }, { "label": "v2026-09-01 + commit f71bdf9", "from": "latest release tag; master evaluated at commit", "value": "f71bdf9e3ea719fba47fa05c1016b56bd9d8941d", "release": "v2026-09-01" }, { "label": "commit f71bdf9", "from": "master at evaluation time", "value": "f71bdf9e3ea719fba47fa05c1016b56bd9d8941d" }, { "label": "file of 2026-09-02", "from": "Last-Modified of the download", "value": "2026-09-02T21:13:46.000Z" } ] }, "evaluatedAt": "2026-10-25T19:10:25.876Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "Genomics England", "url": "https://www.genomicsengland.co.uk/", "note": "Phenotyping in rare-disease programmes", "source": "curated" }, { "name": "monarchinitiative.org", "url": "https://monarchinitiative.org/", "note": "HPO is used by the Monarch Initiative for phenotype annotations.", "source": "OBO Foundry registry" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 94, "grade": "A", "fair": null, "version": "2026-09-01", "terms": 32772, "stars": 380, "license": "hpo", "lastActivity": "2026-10-24T14:07:32Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 95, "grade": "A", "fair": 60, "version": "2026-09-01", "terms": 32772, "stars": 380, "license": "hpo", "lastActivity": "2026-10-24T14:07:32Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 95, "grade": "A", "fair": 60, "version": "2026-09-01", "terms": 32772, "stars": 380, "license": "hpo", "lastActivity": "2026-10-24T14:07:32Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 86, "grade": "A", "fair": 45, "version": "2026-09-01", "terms": 32772, "stars": 380, "license": "hpo", "lastActivity": "2026-10-24T14:07:32Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 86, "grade": "A", "fair": 45, "version": "2026-09-01", "terms": 32772, "stars": 380, "license": "hpo", "lastActivity": "2026-10-24T14:07:32Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 88, "grade": "A", "fair": 45, "version": "2026-09-01", "terms": 32772, "stars": 380, "license": "hpo", "lastActivity": "2026-10-24T14:07:32Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 86 → 88 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 95 → 86 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 94 → 95 · rubric v1.0 → v2.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/hp/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "http://purl.obolibrary.org/obo/hp.owl", "neuroschema:evaluatedVersion": "http://purl.obolibrary.org/obo/hp/releases/2026-09-01/hp.owl" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://hpo.jax.org/", "prov:atTime": "2026-10-25T19:10:23.720Z" }, { "@id": "https://github.com/obophenotype/human-phenotype-ontology", "prov:atTime": "2026-10-25T19:10:23.887Z" }, { "@id": "http://purl.obolibrary.org/obo/hp.owl", "prov:atTime": "2026-10-25T19:10:23.862Z" }, { "@id": "https://release-assets.githubusercontent.com/github-production-release-asset/41063438/f576a2b7-15d0-4bde-a12b-37f8bc94a060?sp=r&sv=2018-11-09&sr=b&spr=https&se=2026-10-25T19%3A57%3A49Z&rscd=attachment%3B+filename%3Dhp.owl&rsct=application%2Foctet-stream&skoid=96c2d410-5711-43a1-aedd-ab1947aa7ab0&sktid=398a6654-997b-47e9-b12b-9515b896b4de&skt=2026-10-25T18%3A56%3A50Z&ske=2026-10-25T19%3A57%3A49Z&sks=b&skv=2018-11-09&sig=8j%2F2%2BoL%2BdIS%2FnPgQKPHi4Hf6mcYMMZ35lpjgkL2z8Kg%3D&jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmVsZWFzZS1hc3NldHMuZ2l0aHVidXNlcmNvbnRlbnQuY29tIiwia2V5Ijoia2V5MSIsImV4cCI6MTc5Mjk1NzIyMywibmJmIjoxNzkyOTU1NDIzLCJwYXRoIjoicmVsZWFzZWFzc2V0cHJvZHVjdGlvbi5ibG9iLmNvcmUud2luZG93cy5uZXQifQ.shs8FvOY2G60LPy4k0K8P1kNVCcmicFN_ipUuIe2yRE&response-content-disposition=attachment%3B%20filename%3Dhp.owl&response-content-type=application%2Foctet-stream", "prov:atTime": "2026-10-25T19:10:23.868Z" }, { "@id": "https://github.com/obophenotype/human-phenotype-ontology.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:23.554Z" }, { "@id": "https://api.github.com/repos/obophenotype/human-phenotype-ontology", "prov:atTime": "2026-10-25T19:10:24.070Z" }, { "@id": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/hp", "prov:atTime": "2026-10-25T19:10:23.766Z" }, { "@id": "https://service.tib.eu/ts4tib/api/ontologies/hp", "prov:atTime": "2026-10-25T19:10:24.898Z" }, { "@id": "https://obofoundry.org/registry/ontologies.jsonld", "prov:atTime": "2026-10-25T19:10:17.692Z" }, { "@id": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "prov:atTime": "2026-10-25T19:10:20.368Z" }, { "@id": "https://bioregistry.io/api/registry/hp", "prov:atTime": "2026-10-25T19:10:23.441Z" }, { "@id": "https://api.crossref.org/works/10.1093%2Fnar%2Fgkaa1043", "prov:atTime": "2026-10-25T19:10:23.555Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:25.876Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#hp" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#hp" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#hp" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#hp" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#hp" } ] } }, { "id": "ado", "acronym": "ADO", "name": "Alzheimer's Disease Ontology", "category": "disease", "kind": "ontology", "description": "Covers the clinical, preclinical and molecular knowledge domains of Alzheimer's disease.", "formats": [ "OWL" ], "species": [ "Human" ], "maintainer": "Fraunhofer SCAI", "license": "CC BY 4.0", "homepage": "https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO", "repository": "https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO", "ols": "ado", "obo": "ado", "publications": [ { "title": "ADO: a disease ontology representing the domain knowledge specific to Alzheimer's disease", "doi": "10.1016/j.jalz.2013.02.009", "year": 2014 } ], "usedBy": [], "tags": [ "alzheimer's", "neurodegeneration", "OBO Foundry" ], "url": "https://neuroschema.org/o/ado/", "evaluation": { "links": { "homepage": { "url": "https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:23.888Z" }, "repository": { "url": "https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:23.888Z" }, "download": null }, "github": { "slug": "Fraunhofer-SCAI-Applied-Semantics/ADO", "stars": 1, "forks": 0, "openIssues": 7, "pushedAt": "2023-09-21T10:02:04Z", "archived": false, "license": null, "latestRelease": { "tag": "v2023-09-20", "date": "2023-09-21T08:39:54Z", "url": "https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO/releases/tag/v2023-09-20" }, "source": "https://api.github.com/repos/Fraunhofer-SCAI-Applied-Semantics/ADO", "fetchedAt": "2026-10-25T19:10:23.891Z" }, "ols": { "portal": "OLS (EMBL-EBI)", "id": "ado", "api": "v2", "title": "Alzheimer's Disease Ontology", "iri": "http://purl.obolibrary.org/obo/ado.owl", "versionIri": "http://purl.obolibrary.org/obo/ado/releases/2023-09-20/ado.owl", "version": "2.0.1", "releaseDate": "2023-09-20", "terms": 1963, "properties": 186, "individuals": 2, "importsFrom": [ "bfo", "bto", "chebi", "cl", "clo", "cmo", "dc", "dcterms", "doid", "dron", "emapa", "exo", "foodon", "fypo", "gecko", "genepio", "geno", "go", "gsso", "hp", "iao", "ico", "ino", "maxo", "mf", "mfomd", "mi", "mmo", "mod", "mondo", "mop", "mp", "mpath", "nbo", "ncbitaxon", "ncit", "oae", "oba", "obcs", "obi", "ogms", "oio", "omit", "ons", "opmi", "owl", "pato", "plana", "pr", "pw", "rdfs", "ro", "scdo", "schemaorg_https", "skos", "so", "stato", "symp", "txpo", "uberon", "vo", "xco" ], "exportsTo": [ "bmont" ], "languages": [ "en", "en-us", "zh" ], "loaded": "2026-10-25T00:07:56.071151860", "sourceFileTimestamp": "Sun Oct 25 00:07:53 UTC 2026", "obsolete": false, "status": "LOADED", "page": "https://www.ebi.ac.uk/ols4/ontologies/ado", "source": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/ado", "fetchedAt": "2026-10-25T19:10:23.596Z" }, "obo": { "id": "ado", "status": "active", "domain": "health", "license": "CC BY 4.0", "usages": [], "source": "https://obofoundry.org/registry/ontologies.jsonld", "fetchedAt": "2026-10-25T19:10:17.692Z" }, "bioportal": null, "citations": [ { "doi": "10.1016/j.jalz.2013.02.009", "count": 92, "source": "https://api.crossref.org/works/10.1016%2Fj.jalz.2013.02.009", "fetchedAt": "2026-10-25T18:49:26.944Z", "stale": true, "staleReason": "HTTP 429", "lastAttemptAt": "2026-10-25T19:10:23.533Z" } ], "git": { "commit": "4c810c83ca06bb1a9c2894fd854044370a2a223a", "ref": "main", "headTag": null, "latestTag": { "name": "v2023-09-20", "commit": "04ac04e33c3a0f69b5b93caa3b0850e3e8b65ee3", "url": "https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO/releases/tag/v2023-09-20" }, "tagCount": 2, "tagDates": [ "2022-06-11", "2023-09-20" ], "url": "https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO/tree/4c810c83ca06bb1a9c2894fd854044370a2a223a", "source": "https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:23.555Z" }, "tib": null, "dashboard": { "ns": "ado", "checks": { "FP01 Open": "PASS", "FP02 Common Format": "PASS", "FP03 URIs": "PASS", "FP04 Versioning": "PASS", "FP05 Scope": "PASS", "FP06 Textual Definitions": "ERROR", "FP07 Relations": "INFO", "FP08 Documented": "PASS", "FP09 Plurality of Users": "ERROR", "FP11 Locus of Authority": "PASS", "FP12 Naming Conventions": "PASS", "FP16 Maintenance": "WARN", "FP20 Responsiveness": "PASS", "ROBOT Report": "ERROR" }, "robot": { "ERROR": 2, "INFO": 6, "WARN": 7 }, "consistent": true, "unsatisfiable": 0, "classes": 72, "axioms": 356, "owl2dl": false, "reusedPct": 36, "usedBy": [], "oboScore": null, "summary": "ERROR", "checkedVersion": "http://purl.obolibrary.org/obo/ado/releases/2023-09-20/ado.owl", "checkedAt": "2025-12-09T20:04:05.691Z", "page": "https://dashboard.obofoundry.org/dashboard/ado/dashboard.html", "source": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "fetchedAt": "2026-10-25T19:10:20.368Z" }, "quality": null, "oops": null, "releases": { "dates": [ "2022-06-22", "2023-09-20", "2023-09-21" ], "lastYear": 0, "from": "GitHub releases" }, "bioregistry": { "prefix": "ado", "name": "Alzheimer's Disease Ontology", "mappings": { "aberowl": "ADO", "bioportal": "ADO", "fairsharing": "FAIRsharing.ckd4rf", "obofoundry": "ado", "ols": "ado", "ontobee": "ADO", "wikidata.entity": "Q54887745" }, "dependsOn": [ "bfo" ], "appearsIn": [], "license": "CC-BY-4.0", "version": "2023-09-20", "deprecated": false, "page": "https://bioregistry.io/ado", "source": "https://bioregistry.io/api/registry/ado", "fetchedAt": "2026-10-25T19:10:23.439Z" }, "artifact": null, "score": 56, "gross": 64, "earned": 64, "possible": 100, "qualityApplies": true, "penalty": { "score": -8, "reason": "3.1 years → 4 × max(0, 3.1 − 1)", "steps": [ { "label": "Time since last activity", "pts": -8, "detail": "3.1 years → 4 × max(0, 3.1 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "C", "fair": 45, "breakdown": { "findable": { "score": 12, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 4, "max": 4, "detail": "purl.obolibrary.org" }, { "label": "Indexed in services (F4)", "pts": 5, "max": 5, "detail": "5: OLS, BioPortal, OBO Foundry, Bioregistry, FAIRsharing" }, { "label": "Citable reference (F2)", "pts": 3, "max": 3, "detail": "doi:10.1016/j.jalz.2013.02.009" } ], "notes": [] }, "accessible": { "score": 12, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "repository HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 3, "max": 3, "detail": "OBO Foundry, Bioregistry" } ], "notes": [] }, "interoperable": { "score": 12, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL" }, { "label": "References other vocabularies (I3)", "pts": 4, "max": 4, "detail": "imports 56: bfo, bto, chebi, cl, clo, cmo, doid, dron…" } ], "notes": [] }, "reusable": { "score": 9, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "CC BY 4.0" }, { "label": "Release provenance (R1.2)", "pts": 2, "max": 4, "detail": "2.0.1 (OLS); not declared inside the artefact" }, { "label": "Community standards (R1.3)", "pts": 2, "max": 3, "detail": "OBO principles: 9/13 checks pass" } ], "notes": [ "Release provenance (R1.2): 2.0.1 (OLS); not declared inside the artefact", "Community standards (R1.3): OBO principles: 9/13 checks pass" ] }, "quality": { "score": 16, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 4, "max": 4, "detail": "imports BFO" }, { "label": "Standard relations (RO)", "pts": 2, "max": 2, "detail": "imports RO" }, { "label": "Logical consistency", "pts": 6, "max": 6, "detail": "consistent, 0 unsatisfiable classes (OBO Dashboard)" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "2 errors" }, { "label": "ROBOT report: warning density", "pts": 1, "max": 2, "detail": "7 warnings / 72 classes = 0.10" }, { "label": "Scaled 13/16 → 20", "pts": 3, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "ROBOT report: no errors: 2 errors", "ROBOT report: warning density: 7 warnings / 72 classes = 0.10", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 0, "max": 16, "steps": [ { "label": "Recency", "pts": 0, "max": 10, "detail": "2023-09-21 → 37.1 months (older / unknown)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases (GitHub releases)" } ], "notes": [ "Recency: 2023-09-21 → 37.1 months (older / unknown)", "Release cadence (12 months): 0 releases (GitHub releases)" ] }, "adoption": { "score": 3, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 0, "max": 7, "detail": "0 projects" }, { "label": "Reused by other ontologies", "pts": 1, "max": 4, "detail": "1: bmont" }, { "label": "Community signal", "pts": 2, "max": 5, "detail": "max(stars 1 → 0, citations 92 → 2)" } ], "notes": [ "Documented adopting projects: 0 projects", "Reused by other ontologies: 1: bmont", "Community signal: max(stars 1 → 0, citations 92 → 2)" ] } }, "lastActivity": "2023-09-21T10:02:04Z", "adopterCount": 0, "reuseCount": 1, "importCount": 56, "registries": [ "OLS", "BioPortal", "OBO Foundry", "Bioregistry", "FAIRsharing" ], "evaluatedVersion": { "label": "2.0.1", "from": "OLS", "value": "http://purl.obolibrary.org/obo/ado/releases/2023-09-20/ado.owl", "all": [ { "label": "2.0.1", "from": "OLS", "value": "http://purl.obolibrary.org/obo/ado/releases/2023-09-20/ado.owl" }, { "label": "v2023-09-20", "from": "latest GitHub release", "value": "https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO/releases/tag/v2023-09-20" }, { "label": "v2023-09-20 + commit 4c810c8", "from": "latest release tag; main evaluated at commit", "value": "4c810c83ca06bb1a9c2894fd854044370a2a223a", "release": "v2023-09-20" }, { "label": "commit 4c810c8", "from": "main at evaluation time", "value": "4c810c83ca06bb1a9c2894fd854044370a2a223a" } ] }, "evaluatedAt": "2026-10-25T19:10:24.195Z", "runId": "2026-10-25T19-10-16Z", "adopters": [] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 58, "grade": "C", "fair": null, "version": "2.0.1", "terms": 1963, "stars": 1, "license": "CC BY 4.0", "lastActivity": "2023-09-21T10:02:04Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 67, "grade": "B", "fair": 60, "version": "2.0.1", "terms": 1963, "stars": 1, "license": "CC BY 4.0", "lastActivity": "2023-09-21T10:02:04Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 59, "grade": "C", "fair": 60, "version": "2.0.1", "terms": 1963, "stars": 1, "license": "CC BY 4.0", "lastActivity": "2023-09-21T10:02:04Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 56, "grade": "C", "fair": 45, "version": "2.0.1", "terms": 1963, "stars": 1, "license": "CC BY 4.0", "lastActivity": "2023-09-21T10:02:04Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 56, "grade": "C", "fair": 45, "version": "2.0.1", "terms": 1963, "stars": 1, "license": "CC BY 4.0", "lastActivity": "2023-09-21T10:02:04Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 48, "grade": "D", "fair": 42, "version": "2.0.1", "terms": 1963, "stars": 1, "license": "CC BY 4.0", "lastActivity": "2023-09-21T10:02:04Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 56 → 48 (grade C → D) · rubric v3.0 → v3.3" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 59 → 56 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 67 → 59 (grade B → C) · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 58 → 67 (grade C → B) · rubric v1.0 → v2.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/ado/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO", "neuroschema:evaluatedVersion": "http://purl.obolibrary.org/obo/ado/releases/2023-09-20/ado.owl" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO", "prov:atTime": "2026-10-25T19:10:23.888Z" }, { "@id": "https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO", "prov:atTime": "2026-10-25T19:10:23.888Z" }, { "@id": "https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:23.555Z" }, { "@id": "https://api.github.com/repos/Fraunhofer-SCAI-Applied-Semantics/ADO", "prov:atTime": "2026-10-25T19:10:23.891Z" }, { "@id": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/ado", "prov:atTime": "2026-10-25T19:10:23.596Z" }, { "@id": "https://obofoundry.org/registry/ontologies.jsonld", "prov:atTime": "2026-10-25T19:10:17.692Z" }, { "@id": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "prov:atTime": "2026-10-25T19:10:20.368Z" }, { "@id": "https://bioregistry.io/api/registry/ado", "prov:atTime": "2026-10-25T19:10:23.439Z" }, { "@id": "https://api.crossref.org/works/10.1016%2Fj.jalz.2013.02.009", "prov:atTime": "2026-10-25T18:49:26.944Z", "neuroschema:carriedForward": true } ] }, "prov:generatedAtTime": "2026-10-25T19:10:24.195Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#ado" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#ado" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#ado" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#ado" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#ado" } ] } }, { "id": "nd", "acronym": "ND", "name": "Neurological Disease Ontology", "category": "disease", "kind": "ontology", "description": "A framework for representing neurological diseases together with their diagnosis, treatment and associated clinical findings.", "formats": [ "OWL" ], "species": [ "Human" ], "maintainer": "Alexander Diehl et al.", "homepage": "https://github.com/addiehl/neurological-disease-ontology", "repository": "https://github.com/addiehl/neurological-disease-ontology", "publications": [], "usedBy": [], "tags": [ "neurology", "disease" ], "url": "https://neuroschema.org/o/nd/", "evaluation": { "links": { "homepage": { "url": "https://github.com/addiehl/neurological-disease-ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:23.885Z" }, "repository": { "url": "https://github.com/addiehl/neurological-disease-ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:23.885Z" }, "download": null }, "github": { "slug": "addiehl/neurological-disease-ontology", "stars": 4, "forks": 4, "openIssues": 4, "pushedAt": "2024-06-04T19:08:52Z", "archived": false, "license": null, "source": "https://api.github.com/repos/addiehl/neurological-disease-ontology", "fetchedAt": "2026-10-25T19:10:24.104Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [], "git": { "commit": "756a20510fd384323d46b006891ecfe1a48cc319", "ref": "master", "headTag": null, "latestTag": null, "tagCount": 0, "tagDates": [], "url": "https://github.com/addiehl/neurological-disease-ontology/tree/756a20510fd384323d46b006891ecfe1a48cc319", "source": "https://github.com/addiehl/neurological-disease-ontology.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:23.619Z" }, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [], "lastYear": 0, "from": null }, "bioregistry": null, "artifact": null, "score": 11, "gross": 17, "earned": 17, "possible": 100, "qualityApplies": true, "penalty": { "score": -6, "reason": "2.4 years → 4 × max(0, 2.4 − 1)", "steps": [ { "label": "Time since last activity", "pts": -6, "detail": "2.4 years → 4 × max(0, 2.4 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 17, "breakdown": { "findable": { "score": 0, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere", "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "repository HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 0, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 0, "max": 4, "detail": "no version in artefact, registry or release tags" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): no version in artefact, registry or release tags", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 0, "max": 4, "detail": "no BFO/COB/DOLCE import found" }, { "label": "Standard relations (RO)", "pts": 0, "max": 2, "detail": "does not import the Relation Ontology" }, { "label": "Logical consistency", "pts": 0, "max": 6, "detail": "never checked by a reasoner" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "ROBOT report: warning density", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "Scaled 0/16 → 20", "pts": 0, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "Upper-ontology alignment: no BFO/COB/DOLCE import found", "Standard relations (RO): does not import the Relation Ontology", "Logical consistency: never checked by a reasoner", "ROBOT report: no errors: no ROBOT report available", "ROBOT report: warning density: no ROBOT report available", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 0, "max": 16, "steps": [ { "label": "Recency", "pts": 0, "max": 10, "detail": "2024-06-04 → 28.7 months (older / unknown)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases" } ], "notes": [ "Recency: 2024-06-04 → 28.7 months (older / unknown)", "Release cadence (12 months): 0 releases" ] }, "adoption": { "score": 0, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 0, "max": 7, "detail": "0 projects" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 0, "max": 5, "detail": "max(stars 4 → 0, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 0 projects", "Reused by other ontologies: 0", "Community signal: max(stars 4 → 0, citations 0 → 0)" ] } }, "lastActivity": "2024-06-04T19:08:52Z", "adopterCount": 0, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": { "label": "commit 756a205", "from": "master at evaluation time", "value": "756a20510fd384323d46b006891ecfe1a48cc319", "all": [ { "label": "commit 756a205", "from": "master at evaluation time", "value": "756a20510fd384323d46b006891ecfe1a48cc319" } ] }, "evaluatedAt": "2026-10-25T19:10:24.372Z", "runId": "2026-10-25T19-10-16Z", "adopters": [] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 35, "grade": "D", "fair": null, "version": null, "terms": null, "stars": 4, "license": null, "lastActivity": "2024-06-04T19:08:52Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 34, "grade": "D", "fair": 30, "version": "commit 756a205", "terms": null, "stars": 4, "license": null, "lastActivity": "2024-06-04T19:08:52Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 28, "grade": "D", "fair": 30, "version": "commit 756a205", "terms": null, "stars": 4, "license": null, "lastActivity": "2024-06-04T19:08:52Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 11, "grade": "D", "fair": 17, "version": "commit 756a205", "terms": null, "stars": 4, "license": null, "lastActivity": "2024-06-04T19:08:52Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 11, "grade": "E", "fair": 17, "version": "commit 756a205", "terms": null, "stars": 4, "license": null, "lastActivity": "2024-06-04T19:08:52Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 8, "grade": "E", "fair": 14, "version": "commit 756a205", "terms": null, "stars": 4, "license": null, "lastActivity": "2024-06-04T19:08:52Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 11 → 8 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 28 → 11 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 34 → 28 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 35 → 34 · rubric v1.0 → v2.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Evaluated version: — → commit 756a205" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/nd/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://github.com/addiehl/neurological-disease-ontology", "neuroschema:evaluatedVersion": "756a20510fd384323d46b006891ecfe1a48cc319" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://github.com/addiehl/neurological-disease-ontology", "prov:atTime": "2026-10-25T19:10:23.885Z" }, { "@id": "https://github.com/addiehl/neurological-disease-ontology", "prov:atTime": "2026-10-25T19:10:23.885Z" }, { "@id": "https://github.com/addiehl/neurological-disease-ontology.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:23.619Z" }, { "@id": "https://api.github.com/repos/addiehl/neurological-disease-ontology", "prov:atTime": "2026-10-25T19:10:24.104Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:24.372Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#nd" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#nd" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#nd" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#nd" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#nd" } ] } }, { "id": "epso", "acronym": "EPSO", "name": "Epilepsy and Seizure Ontology", "category": "disease", "kind": "ontology", "description": "Represents epilepsy syndromes, seizure types, EEG findings and treatments, aligned with ILAE classifications.", "formats": [ "OWL" ], "species": [ "Human" ], "maintainer": "Case Western Reserve University", "homepage": "https://bioportal.bioontology.org/ontologies/EPSO", "bioportal": "EPSO", "publications": [], "usedBy": [], "tags": [ "epilepsy", "seizure", "EEG" ], "url": "https://neuroschema.org/o/epso/", "evaluation": { "links": { "homepage": { "url": "https://bioportal.bioontology.org/ontologies/EPSO", "code": 403, "state": "blocked", "checkedAt": "2026-10-25T19:10:23.735Z" }, "repository": null, "download": null }, "github": null, "ols": null, "obo": null, "bioportal": null, "citations": [], "git": null, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [], "lastYear": 0, "from": null }, "bioregistry": null, "artifact": null, "score": 7, "gross": 12, "earned": 12, "possible": 100, "qualityApplies": true, "penalty": { "score": -5, "reason": "no commits, releases or dated files found", "steps": [ { "label": "No activity evidence", "pts": -5, "detail": "no commits, releases or dated files found" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 12, "breakdown": { "findable": { "score": 1, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 1, "max": 5, "detail": "1: BioPortal" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): 1: BioPortal", "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 3, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 403" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 0, "max": 6, "detail": "no download or repository listed" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Artefact retrievable over HTTP(S) (A1): no download or repository listed", "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 0, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 0, "max": 4, "detail": "no version in artefact, registry or release tags" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): no version in artefact, registry or release tags", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 0, "max": 4, "detail": "no BFO/COB/DOLCE import found" }, { "label": "Standard relations (RO)", "pts": 0, "max": 2, "detail": "does not import the Relation Ontology" }, { "label": "Logical consistency", "pts": 0, "max": 6, "detail": "never checked by a reasoner" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "ROBOT report: warning density", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "Scaled 0/16 → 20", "pts": 0, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "Upper-ontology alignment: no BFO/COB/DOLCE import found", "Standard relations (RO): does not import the Relation Ontology", "Logical consistency: never checked by a reasoner", "ROBOT report: no errors: no ROBOT report available", "ROBOT report: warning density: no ROBOT report available", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 0, "max": 16, "steps": [ { "label": "Recency", "pts": 0, "max": 10, "detail": "no activity evidence" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases" } ], "notes": [ "Recency: no activity evidence", "Release cadence (12 months): 0 releases" ] }, "adoption": { "score": 0, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 0, "max": 7, "detail": "0 projects" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 0, "max": 5, "detail": "max(stars 0 → 0, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 0 projects", "Reused by other ontologies: 0", "Community signal: max(stars 0 → 0, citations 0 → 0)" ] } }, "lastActivity": null, "adopterCount": 0, "reuseCount": 0, "importCount": 0, "registries": [ "BioPortal" ], "evaluatedVersion": null, "evaluatedAt": "2026-10-25T19:10:23.735Z", "runId": "2026-10-25T19-10-16Z", "adopters": [] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 23, "grade": "D", "fair": null, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "blocked" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 25, "grade": "D", "fair": 25, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "blocked" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 20, "grade": "D", "fair": 25, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "blocked" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 7, "grade": "D", "fair": 12, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "blocked" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 7, "grade": "E", "fair": 12, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "blocked" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 7, "grade": "E", "fair": 12, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "blocked" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 20 → 7 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 25 → 20 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 23 → 25 · rubric v1.0 → v2.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/epso/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://bioportal.bioontology.org/ontologies/EPSO", "neuroschema:evaluatedVersion": null }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://bioportal.bioontology.org/ontologies/EPSO", "prov:atTime": "2026-10-25T19:10:23.735Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:23.735Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#epso" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#epso" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#epso" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#epso" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#epso" } ] } }, { "id": "pdon", "acronym": "PDON", "name": "Parkinson's Disease Ontology", "category": "disease", "kind": "ontology", "description": "Models knowledge about Parkinson's disease, including etiology, symptoms, diagnosis and treatment, for literature mining and data integration.", "formats": [ "OWL" ], "species": [ "Human" ], "maintainer": "Fraunhofer SCAI", "homepage": "https://bioportal.bioontology.org/ontologies/PDON", "bioportal": "PDON", "publications": [], "usedBy": [], "tags": [ "parkinson's", "neurodegeneration" ], "url": "https://neuroschema.org/o/pdon/", "evaluation": { "links": { "homepage": { "url": "https://bioportal.bioontology.org/ontologies/PDON", "code": 403, "state": "blocked", "checkedAt": "2026-10-25T19:10:23.755Z" }, "repository": null, "download": null }, "github": null, "ols": null, "obo": null, "bioportal": null, "citations": [], "git": null, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [], "lastYear": 0, "from": null }, "bioregistry": null, "artifact": null, "score": 7, "gross": 12, "earned": 12, "possible": 100, "qualityApplies": true, "penalty": { "score": -5, "reason": "no commits, releases or dated files found", "steps": [ { "label": "No activity evidence", "pts": -5, "detail": "no commits, releases or dated files found" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 12, "breakdown": { "findable": { "score": 1, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 1, "max": 5, "detail": "1: BioPortal" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): 1: BioPortal", "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 3, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 403" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 0, "max": 6, "detail": "no download or repository listed" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Artefact retrievable over HTTP(S) (A1): no download or repository listed", "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 0, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 0, "max": 4, "detail": "no version in artefact, registry or release tags" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): no version in artefact, registry or release tags", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 0, "max": 4, "detail": "no BFO/COB/DOLCE import found" }, { "label": "Standard relations (RO)", "pts": 0, "max": 2, "detail": "does not import the Relation Ontology" }, { "label": "Logical consistency", "pts": 0, "max": 6, "detail": "never checked by a reasoner" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "ROBOT report: warning density", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "Scaled 0/16 → 20", "pts": 0, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "Upper-ontology alignment: no BFO/COB/DOLCE import found", "Standard relations (RO): does not import the Relation Ontology", "Logical consistency: never checked by a reasoner", "ROBOT report: no errors: no ROBOT report available", "ROBOT report: warning density: no ROBOT report available", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 0, "max": 16, "steps": [ { "label": "Recency", "pts": 0, "max": 10, "detail": "no activity evidence" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases" } ], "notes": [ "Recency: no activity evidence", "Release cadence (12 months): 0 releases" ] }, "adoption": { "score": 0, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 0, "max": 7, "detail": "0 projects" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 0, "max": 5, "detail": "max(stars 0 → 0, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 0 projects", "Reused by other ontologies: 0", "Community signal: max(stars 0 → 0, citations 0 → 0)" ] } }, "lastActivity": null, "adopterCount": 0, "reuseCount": 0, "importCount": 0, "registries": [ "BioPortal" ], "evaluatedVersion": null, "evaluatedAt": "2026-10-25T19:10:23.755Z", "runId": "2026-10-25T19-10-16Z", "adopters": [] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 23, "grade": "D", "fair": null, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "blocked" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 25, "grade": "D", "fair": 25, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "blocked" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 20, "grade": "D", "fair": 25, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "blocked" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 7, "grade": "D", "fair": 12, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "blocked" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 7, "grade": "E", "fair": 12, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "blocked" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 7, "grade": "E", "fair": 12, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "blocked" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 20 → 7 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 25 → 20 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 23 → 25 · rubric v1.0 → v2.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/pdon/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://bioportal.bioontology.org/ontologies/PDON", "neuroschema:evaluatedVersion": null }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://bioportal.bioontology.org/ontologies/PDON", "prov:atTime": "2026-10-25T19:10:23.755Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:23.755Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#pdon" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#pdon" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#pdon" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#pdon" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#pdon" } ] } }, { "id": "go", "acronym": "GO", "name": "Gene Ontology", "category": "molecular", "kind": "ontology", "description": "Describes gene product functions, processes and locations, including synaptic transmission, neurotransmitter release and neuron development.", "formats": [ "OWL", "OBO", "JSON" ], "species": [ "Multi-species" ], "maintainer": "Gene Ontology Consortium", "license": "CC BY 4.0", "homepage": "https://geneontology.org/", "repository": "https://github.com/geneontology/go-ontology", "download": "http://purl.obolibrary.org/obo/go.owl", "ols": "go", "obo": "go", "publications": [ { "title": "The Gene Ontology knowledgebase in 2023", "doi": "10.1093/genetics/iyad031", "year": 2023 } ], "usedBy": [ { "name": "SynGO", "url": "https://syngoportal.org/", "note": "Synaptic annotations built on GO terms" } ], "tags": [ "genes", "synapse", "function", "OBO Foundry" ], "url": "https://neuroschema.org/o/go/", "evaluation": { "links": { "homepage": { "url": "https://geneontology.org/", "code": 200, "state": "ok", "lastModified": "2026-10-16T00:54:30.000Z", "checkedAt": "2026-10-25T19:10:24.379Z" }, "repository": { "url": "https://github.com/geneontology/go-ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:24.323Z" }, "download": { "url": "http://purl.obolibrary.org/obo/go.owl", "code": 200, "state": "ok", "resolvedUrl": "https://current.geneontology.org/ontology/go.owl", "lastModified": "2026-08-08T22:26:56.000Z", "checkedAt": "2026-10-25T19:10:24.420Z" } }, "github": { "slug": "geneontology/go-ontology", "stars": 255, "forks": 47, "openIssues": 735, "pushedAt": "2026-10-25T06:06:53Z", "archived": false, "license": "CC-BY-4.0", "source": "https://api.github.com/repos/geneontology/go-ontology", "fetchedAt": "2026-10-25T19:10:24.317Z" }, "ols": { "portal": "OLS (EMBL-EBI)", "id": "go", "api": "v2", "title": "Gene Ontology", "iri": "http://purl.obolibrary.org/obo/go/extensions/go-plus.ofn", "versionIri": "http://purl.obolibrary.org/obo/go/releases/2026-07-26/extensions/go-plus.ofn", "version": "2026-07-26", "releaseDate": "2026-07-26", "terms": 85169, "properties": 484, "individuals": 48, "importsFrom": [ "bfo", "bspo", "chebi", "cl", "cob", "dc", "dcterms", "ddanat", "envo", "fao", "iao", "ido", "mod", "nbo", "ncbitaxon", "oba", "obi", "oio", "omo", "opl", "owl", "pato", "po", "pr", "rdfs", "ro", "skos", "so", "taxrank", "uberon" ], "exportsTo": [ "ado", "agro", "aism", "amphx", "apollo_sv", "bao", "bcgo", "bcio", "bco", "bmont", "bspo", "caro", "cco", "ceph", "cheminf", "chiro", "chmo", "cido", "cl", "clo", "clyh", "cmpo", "cob", "coho", "covoc", "cteno", "dideo", "dpo", "dron", "ec", "ecao", "eco", "ecocore", "ecto", "efo", "emro", "enm", "envo", "epio", "eupath", "exmo", "fbbi", "fbbt", "fbdv", "flopo", "foodon", "fovt", "fypo", "gallont", "gecko", "genepio", "geno", "gexo", "gsso", "hcao", "hgnc", "hgnc.genegroup", "hp", "htn", "iceo", "ico", "ido", "idocovid19", "idomal", "ino", "maxo", "mco", "mf", "mfmo", "mfoem", "mfomd", "micro", "miro", "mondo", "mp", "mpio", "mro", "msio", "nbo", "ncro", "oae", "oba", "obcs", "obi", "obib", "ogsf", "ohd", "ohmi", "ohpi", "omiabis", "omit", "omp", "omrse", "one", "ons", "ontoneo", "oostt", "opl", "opmi", "ornaseq", "pain", "pato", "pbpko", "pcl", "pco", "pdro", "peco", "phipo", "plana", "planp", "po", "poro", "ppo", "pr", "prefer", "pride", "proco", "psdo", "pso", "pw", "rbo", "reto", "rexo", "ro", "sepio", "slso", "stato", "swo", "tao", "to", "txpo", "uberon", "upa", "upheno", "valuesets", "vbo", "vo", "vsao", "wbbt", "wbls", "wbphenotype", "xpo", "zp" ], "languages": [ "en" ], "loaded": "2026-10-25T00:09:08.883312515", "sourceFileTimestamp": "Sun Oct 25 00:08:58 UTC 2026", "obsolete": false, "status": "LOADED", "page": "https://www.ebi.ac.uk/ols4/ontologies/go", "source": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/go", "fetchedAt": "2026-10-25T19:10:23.971Z" }, "obo": { "id": "go", "status": "active", "domain": "biological systems", "license": "CC BY 4.0", "usages": [ { "user": "http://geneontology.org", "type": "annotation", "description": "The GO ontology is used by the GO consortium for functional annotation of genes" }, { "user": "https://www.uniprot.org", "type": "annotation", "description": "Uniprot uses GO to show the function of proteins" }, { "user": "https://reactome.org", "type": "annotation", "description": "Reactome annotates activities, pathways, and cellular localization using GO" }, { "user": "https://www.alliancegenome.org", "type": "annotation", "description": "The Alliance of Genome Resources uses GO for model organism gene function annotation" }, { "user": "https://www.rhea-db.org", "type": "mapping", "description": "Rhea uses GO to describe individual biochemical reactions" } ], "source": "https://obofoundry.org/registry/ontologies.jsonld", "fetchedAt": "2026-10-25T19:10:17.692Z" }, "bioportal": null, "citations": [ { "doi": "10.1093/genetics/iyad031", "count": 2624, "source": "https://api.crossref.org/works/10.1093%2Fgenetics%2Fiyad031", "fetchedAt": "2026-10-25T19:10:23.872Z" } ], "git": { "commit": "325856eea99660d02585bfb3d20d938c8d1b1371", "ref": "master", "headTag": null, "latestTag": null, "tagCount": 0, "tagDates": [], "url": "https://github.com/geneontology/go-ontology/tree/325856eea99660d02585bfb3d20d938c8d1b1371", "source": "https://github.com/geneontology/go-ontology.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:24.314Z" }, "tib": { "portal": "TIB Terminology Service", "id": "go", "api": "v1", "title": "Gene Ontology", "iri": "http://purl.obolibrary.org/obo/go.owl", "versionIri": "http://purl.obolibrary.org/obo/go/releases/2025-10-10/go.owl", "version": "2025-10-10", "releaseDate": "2025-10-10", "terms": 51842, "properties": 72, "individuals": 0, "importsFrom": [], "exportsTo": [], "languages": [], "loaded": "2025-10-18T22:17:10.339+0000", "status": "SKIP", "page": "https://service.tib.eu/ts4tib/ontologies/go", "source": "https://service.tib.eu/ts4tib/api/ontologies/go", "fetchedAt": "2026-10-25T19:10:25.642Z" }, "dashboard": { "ns": "go", "checks": { "FP01 Open": "PASS", "FP02 Common Format": "PASS", "FP03 URIs": "PASS", "FP04 Versioning": "ERROR", "FP05 Scope": "PASS", "FP06 Textual Definitions": "WARN", "FP07 Relations": "PASS", "FP08 Documented": "PASS", "FP09 Plurality of Users": "PASS", "FP11 Locus of Authority": "PASS", "FP12 Naming Conventions": "PASS", "FP16 Maintenance": "PASS", "FP20 Responsiveness": "PASS", "ROBOT Report": "WARN" }, "robot": { "ERROR": 0, "INFO": 8, "WARN": 3 }, "consistent": true, "unsatisfiable": 0, "classes": 51986, "axioms": 608324, "owl2dl": false, "reusedPct": 0.09, "usedBy": [ "ado", "amphx", "apollo_sv", "bmont", "cido", "cl", "clo", "clyh", "cteno", "ddpheno", "dideo", "dpo", "ecao", "ecocore", "ecto", "emro", "envo", "fbbt", "fbdv", "flopo", "fovt", "fypo", "gecko", "geno", "gsso", "hp", "iceo", "ido", "ino", "mf", "mfoem", "mondo", "mp", "mro", "nbo", "ncro", "oae", "oba", "obi", "ohd", "ohmi", "omit", "omp", "omrse", "ons", "ontoneo", "opl", "pain", "pato", "pbpko", "pcl", "pco", "phipo", "plana", "poro", "ppo", "prefer", "rbo", "ro", "stato", "to", "txpo", "uberon", "upheno", "vo", "wbphenotype", "xpo", "zp" ], "oboScore": 0.587, "summary": "ERROR", "checkedVersion": "http://purl.obolibrary.org/obo/go/releases/2026-07-26/go.owl", "checkedAt": "2026-09-16T19:47:33.284Z", "page": "https://dashboard.obofoundry.org/dashboard/go/dashboard.html", "source": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "fetchedAt": "2026-10-25T19:10:20.368Z" }, "quality": null, "oops": { "error": "fetch failed", "checkedAt": "2026-10-25T19:09:06.507Z", "source": "data/quality/go.json" }, "releases": { "dates": [ "2026-07-26" ], "lastYear": 1, "from": "OLS version IRI" }, "bioregistry": { "prefix": "go", "name": "Gene Ontology", "mappings": { "aberowl": "GO", "agroportal": "GO", "bartoc": "572", "biocontext": "GO", "bioportal": "GO", "edam.data": "1176", "fairsharing": "FAIRsharing.6xq0ee", "go.resource": "GO", "hl7": "6.128", "integbio": "nbdc00074", "miriam": "go", "n2t": "go", "ncbi.resource": "GO", "obofoundry": "go", "ols": "go", "ontobee": "GO", "pathguide": "272", "prefixcommons": "go", "re3data": "r3d100014165", "tib.ts": "go", "togoid": "Go", "uniprot.resource": "DB-0037", "wikidata.entity": "Q135085", "wikidata.property": "P686" }, "dependsOn": [ "cl", "ncbitaxon", "ro", "uberon" ], "appearsIn": [ "agro", "chiro", "cl", "ecocore", "ecto", "envo", "maxo", "pcl", "pco", "planp", "uberon", "xpo", "zp" ], "license": "CC-BY-4.0", "version": "2026-07-26", "deprecated": false, "page": "https://bioregistry.io/go", "source": "https://bioregistry.io/api/registry/go", "fetchedAt": "2026-10-25T19:10:23.793Z" }, "artifact": { "source": "https://current.geneontology.org/ontology/go.owl", "versionIri": "http://purl.obolibrary.org/obo/go/releases/2026-07-26/go.owl", "versionInfo": "2026-07-26", "etag": "\"7e34dd727630cc70eeba4bf5692dd90e-16\"", "contentType": "application/rdf+xml", "fetchedAt": "2026-10-25T19:10:24.439Z" }, "score": 94, "gross": 94, "earned": 94, "possible": 100, "qualityApplies": true, "penalty": { "score": 0, "reason": "active (last activity 2026-10-25)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.0 years → 4 × max(0, 0.0 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "A", "fair": 48, "breakdown": { "findable": { "score": 12, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 4, "max": 4, "detail": "purl.obolibrary.org" }, { "label": "Indexed in services (F4)", "pts": 5, "max": 5, "detail": "6: OLS, TIB, BioPortal, OBO Foundry, Bioregistry, FAIRsharing" }, { "label": "Citable reference (F2)", "pts": 3, "max": 3, "detail": "doi:10.1093/genetics/iyad031" } ], "notes": [] }, "accessible": { "score": 12, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "download HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 3, "max": 3, "detail": "OBO Foundry, Bioregistry" } ], "notes": [] }, "interoperable": { "score": 12, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL, OBO" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL, OBO" }, { "label": "References other vocabularies (I3)", "pts": 4, "max": 4, "detail": "imports 24: bfo, bspo, chebi, cl, cob, ddanat, envo, fao…" } ], "notes": [] }, "reusable": { "score": 12, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "CC BY 4.0" }, { "label": "Release provenance (R1.2)", "pts": 4, "max": 4, "detail": "2026-07-26 (version IRI in the artefact)" }, { "label": "Community standards (R1.3)", "pts": 3, "max": 3, "detail": "OBO principles: 11/13 checks pass" } ], "notes": [] }, "quality": { "score": 20, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 4, "max": 4, "detail": "imports BFO, COB" }, { "label": "Standard relations (RO)", "pts": 2, "max": 2, "detail": "imports RO" }, { "label": "Logical consistency", "pts": 6, "max": 6, "detail": "consistent, 0 unsatisfiable classes (OBO Dashboard)" }, { "label": "ROBOT report: no errors", "pts": 2, "max": 2, "detail": "0 errors" }, { "label": "ROBOT report: warning density", "pts": 2, "max": 2, "detail": "3 warnings / 51986 classes = 0.00" }, { "label": "Scaled 16/16 → 20", "pts": 4, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 12, "max": 16, "steps": [ { "label": "Recency", "pts": 10, "max": 10, "detail": "2026-10-25 → 0.0 months (≤ 3 months)" }, { "label": "Release cadence (12 months)", "pts": 2, "max": 6, "detail": "1 release (OLS version IRI)" } ], "notes": [ "Release cadence (12 months): 1 release (OLS version IRI)" ] }, "adoption": { "score": 14, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 5, "max": 7, "detail": "6 projects" }, { "label": "Reused by other ontologies", "pts": 4, "max": 4, "detail": "144: ado, amphx, apollo_sv, bmont, cido, cl…" }, { "label": "Community signal", "pts": 5, "max": 5, "detail": "max(stars 255 → 4, citations 2624 → 5)" } ], "notes": [ "Documented adopting projects: 6 projects" ] } }, "lastActivity": "2026-10-25T06:06:53Z", "adopterCount": 6, "reuseCount": 144, "importCount": 24, "registries": [ "OLS", "TIB", "BioPortal", "OBO Foundry", "Bioregistry", "FAIRsharing" ], "evaluatedVersion": { "label": "2026-07-26", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/go/releases/2026-07-26/go.owl", "inArtefact": true, "all": [ { "label": "2026-07-26", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/go/releases/2026-07-26/go.owl", "inArtefact": true }, { "label": "2026-07-26", "from": "version info in the artefact", "value": "2026-07-26", "inArtefact": true }, { "label": "2026-07-26", "from": "OLS", "value": "http://purl.obolibrary.org/obo/go/releases/2026-07-26/extensions/go-plus.ofn" }, { "label": "commit 325856e", "from": "master at evaluation time", "value": "325856eea99660d02585bfb3d20d938c8d1b1371" }, { "label": "file of 2026-08-08", "from": "Last-Modified of the download", "value": "2026-08-08T22:26:56.000Z" } ] }, "evaluatedAt": "2026-10-25T19:10:25.879Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "SynGO", "url": "https://syngoportal.org/", "note": "Synaptic annotations built on GO terms", "source": "curated" }, { "name": "geneontology.org", "url": "http://geneontology.org", "note": "The GO ontology is used by the GO consortium for functional annotation of genes", "source": "OBO Foundry registry" }, { "name": "uniprot.org", "url": "https://www.uniprot.org", "note": "Uniprot uses GO to show the function of proteins", "source": "OBO Foundry registry" }, { "name": "reactome.org", "url": "https://reactome.org", "note": "Reactome annotates activities, pathways, and cellular localization using GO", "source": "OBO Foundry registry" }, { "name": "alliancegenome.org", "url": "https://www.alliancegenome.org", "note": "The Alliance of Genome Resources uses GO for model organism gene function annotation", "source": "OBO Foundry registry" }, { "name": "rhea-db.org", "url": "https://www.rhea-db.org", "note": "Rhea uses GO to describe individual biochemical reactions", "source": "OBO Foundry registry" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 100, "grade": "A", "fair": null, "version": "2026-07-26", "terms": 85169, "stars": 255, "license": "CC BY 4.0", "lastActivity": "2026-10-25T06:06:53Z", "adopters": 6, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 100, "grade": "A", "fair": 60, "version": "2026-07-26", "terms": 85169, "stars": 255, "license": "CC BY 4.0", "lastActivity": "2026-10-25T06:06:53Z", "adopters": 6, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 100, "grade": "A", "fair": 60, "version": "2026-07-26", "terms": 85169, "stars": 255, "license": "CC BY 4.0", "lastActivity": "2026-10-25T06:06:53Z", "adopters": 6, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 94, "grade": "A", "fair": 48, "version": "2026-07-26", "terms": 85169, "stars": 255, "license": "CC BY 4.0", "lastActivity": "2026-10-25T06:06:53Z", "adopters": 6, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 94, "grade": "A", "fair": 48, "version": "2026-07-26", "terms": 85169, "stars": 255, "license": "CC BY 4.0", "lastActivity": "2026-10-25T06:06:53Z", "adopters": 6, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 92, "grade": "A", "fair": 48, "version": "2026-07-26", "terms": 85169, "stars": 255, "license": "CC BY 4.0", "lastActivity": "2026-10-25T06:06:53Z", "adopters": 6, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 94 → 92 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 100 → 94 · rubric v2.2 → v3.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/go/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "http://purl.obolibrary.org/obo/go.owl", "neuroschema:evaluatedVersion": "http://purl.obolibrary.org/obo/go/releases/2026-07-26/go.owl" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://geneontology.org/", "prov:atTime": "2026-10-25T19:10:24.379Z" }, { "@id": "https://github.com/geneontology/go-ontology", "prov:atTime": "2026-10-25T19:10:24.323Z" }, { "@id": "http://purl.obolibrary.org/obo/go.owl", "prov:atTime": "2026-10-25T19:10:24.420Z" }, { "@id": "https://current.geneontology.org/ontology/go.owl", "prov:atTime": "2026-10-25T19:10:24.439Z" }, { "@id": "https://github.com/geneontology/go-ontology.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:24.314Z" }, { "@id": "https://api.github.com/repos/geneontology/go-ontology", "prov:atTime": "2026-10-25T19:10:24.317Z" }, { "@id": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/go", "prov:atTime": "2026-10-25T19:10:23.971Z" }, { "@id": "https://service.tib.eu/ts4tib/api/ontologies/go", "prov:atTime": "2026-10-25T19:10:25.642Z" }, { "@id": "https://obofoundry.org/registry/ontologies.jsonld", "prov:atTime": "2026-10-25T19:10:17.692Z" }, { "@id": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "prov:atTime": "2026-10-25T19:10:20.368Z" }, { "@id": "https://bioregistry.io/api/registry/go", "prov:atTime": "2026-10-25T19:10:23.793Z" }, { "@id": "https://api.crossref.org/works/10.1093%2Fgenetics%2Fiyad031", "prov:atTime": "2026-10-25T19:10:23.872Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:25.879Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#go" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#go" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#go" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#go" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#go" } ] } }, { "id": "syngo", "acronym": "SynGO", "name": "SynGO – Synaptic Gene Ontologies and Annotations", "category": "molecular", "kind": "knowledge-base", "description": "Expert-curated, evidence-based annotations of synaptic gene functions and locations, organised with Gene Ontology terms.", "formats": [ "Web", "Spreadsheet", "GO annotation" ], "species": [ "Human", "Mouse", "Rat" ], "maintainer": "SynGO consortium", "homepage": "https://syngoportal.org/", "publications": [ { "title": "SynGO: An Evidence-Based, Expert-Curated Knowledge Base for the Synapse", "doi": "10.1016/j.neuron.2019.05.002", "year": 2019 } ], "usedBy": [], "tags": [ "synapse", "genes", "annotation" ], "url": "https://neuroschema.org/o/syngo/", "evaluation": { "links": { "homepage": { "url": "https://syngoportal.org/", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:24.122Z" }, "repository": null, "download": null }, "github": null, "ols": null, "obo": null, "bioportal": null, "citations": [ { "doi": "10.1016/j.neuron.2019.05.002", "count": 1019, "source": "https://api.crossref.org/works/10.1016%2Fj.neuron.2019.05.002", "fetchedAt": "2026-10-25T19:10:23.826Z" } ], "git": null, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [], "lastYear": 0, "from": null }, "bioregistry": null, "artifact": null, "score": 9, "gross": 14, "earned": 11, "possible": 80, "qualityApplies": false, "penalty": { "score": -5, "reason": "no commits, releases or dated files found", "steps": [ { "label": "No activity evidence", "pts": -5, "detail": "no commits, releases or dated files found" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 6, "breakdown": { "findable": { "score": 3, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 3, "max": 3, "detail": "doi:10.1016/j.neuron.2019.05.002" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere" ] }, "accessible": { "score": 3, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 0, "max": 6, "detail": "no download or repository listed" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Artefact retrievable over HTTP(S) (A1): no download or repository listed", "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 0, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 0, "max": 5, "detail": "none of: Web, Spreadsheet, GO annotation" }, { "label": "Semantic-web IRIs (I2)", "pts": 0, "max": 3, "detail": "no RDF/OWL/JSON-LD representation" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "Formal machine-readable format (I1): none of: Web, Spreadsheet, GO annotation", "Semantic-web IRIs (I2): no RDF/OWL/JSON-LD representation", "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 0, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 0, "max": 4, "detail": "no version in artefact, registry or release tags" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): no version in artefact, registry or release tags", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Not applicable", "pts": 0, "max": 0, "detail": "knowledge-base without an OWL/OBO/RDF artefact; total scaled from 80 to 100" } ], "notes": [], "applicable": false }, "maintenance": { "score": 0, "max": 16, "steps": [ { "label": "Recency", "pts": 0, "max": 10, "detail": "no activity evidence" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases" } ], "notes": [ "Recency: no activity evidence", "Release cadence (12 months): 0 releases" ] }, "adoption": { "score": 5, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 0, "max": 7, "detail": "0 projects" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 5, "max": 5, "detail": "max(stars 0 → 0, citations 1019 → 5)" } ], "notes": [ "Documented adopting projects: 0 projects", "Reused by other ontologies: 0" ] } }, "lastActivity": null, "adopterCount": 0, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": null, "evaluatedAt": "2026-10-25T19:10:24.122Z", "runId": "2026-10-25T19-10-16Z", "adopters": [] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 18, "grade": "D", "fair": null, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 18, "grade": "D", "fair": 10, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 13, "grade": "D", "fair": 10, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 9, "grade": "D", "fair": 6, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 9, "grade": "E", "fair": 6, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 9, "grade": "E", "fair": 6, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 13 → 9 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 18 → 13 · rubric v2.0 → v2.2" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/syngo/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://syngoportal.org/", "neuroschema:evaluatedVersion": null }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://syngoportal.org/", "prov:atTime": "2026-10-25T19:10:24.122Z" }, { "@id": "https://api.crossref.org/works/10.1016%2Fj.neuron.2019.05.002", "prov:atTime": "2026-10-25T19:10:23.826Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:24.122Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#syngo" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#syngo" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#syngo" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#syngo" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#syngo" } ] } }, { "id": "chebi", "acronym": "ChEBI", "name": "Chemical Entities of Biological Interest", "category": "molecular", "kind": "ontology", "description": "An ontology of small molecules, including neurotransmitters, neuromodulators and neuroactive drugs, with their chemical roles.", "formats": [ "OWL", "OBO", "SDF" ], "species": [ "N/A" ], "maintainer": "EMBL-EBI", "license": "CC BY 4.0", "homepage": "https://www.ebi.ac.uk/chebi/", "repository": "https://github.com/ebi-chebi/ChEBI", "download": "http://purl.obolibrary.org/obo/chebi.owl", "ols": "chebi", "obo": "chebi", "publications": [ { "title": "ChEBI in 2016: Improved services and an expanding collection of metabolites", "doi": "10.1093/nar/gkv1031", "year": 2016 } ], "usedBy": [], "tags": [ "chemistry", "neurotransmitters", "drugs", "OBO Foundry" ], "url": "https://neuroschema.org/o/chebi/", "evaluation": { "links": { "homepage": { "url": "https://www.ebi.ac.uk/chebi/", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:24.327Z" }, "repository": { "url": "https://github.com/ebi-chebi/ChEBI", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:24.649Z" }, "download": { "url": "http://purl.obolibrary.org/obo/chebi.owl", "code": 200, "state": "ok", "resolvedUrl": "http://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi.owl", "lastModified": "2026-10-06T10:30:42.000Z", "checkedAt": "2026-10-25T19:10:25.251Z" } }, "github": { "slug": "ebi-chebi/ChEBI", "stars": 51, "forks": 11, "openIssues": 487, "pushedAt": "2022-04-20T13:01:36Z", "archived": false, "license": "CC-BY-4.0", "source": "https://api.github.com/repos/ebi-chebi/ChEBI", "fetchedAt": "2026-10-25T19:10:24.678Z" }, "ols": { "portal": "OLS (EMBL-EBI)", "id": "chebi", "api": "v2", "title": "Chemical Entities of Biological Interest", "iri": "http://purl.obolibrary.org/obo/chebi.owl", "versionIri": "http://purl.obolibrary.org/obo/chebi/256/chebi.owl", "version": "256", "releaseDate": null, "terms": 238150, "properties": 48, "individuals": 0, "importsFrom": [ "dcterms", "iao", "oio", "ro" ], "exportsTo": [ "addicto", "ado", "afo", "agro", "aism", "apollo_sv", "bao", "bcgo", "bco", "bmont", "cao", "caro", "cdno", "cheminf", "chiro", "chmo", "cido", "cl", "clo", "cmpo", "cob", "covoc", "cteno", "dideo", "disdriv", "doid", "dpo", "dron", "ecao", "eco", "ecocore", "ecto", "efo", "enm", "envo", "eupath", "exmo", "fbcv", "fideo", "flopo", "fobi", "foodon", "fovt", "fypo", "genepio", "geno", "go", "gsso", "hcao", "hp", "iceo", "ico", "ido", "idocovid19", "idomal", "ino", "maxo", "mco", "mfmo", "micro", "mondo", "mop", "mp", "msio", "nbo", "ncro", "ngbo", "oba", "obcs", "obi", "obib", "ogsf", "ohd", "ohmi", "ohpi", "omiabis", "omit", "omp", "one", "ons", "opmi", "ornaseq", "ovae", "pato", "pbpko", "pcl", "pdro", "peco", "phipo", "poro", "pr", "prefer", "pride", "proco", "psdo", "rbo", "ro", "rxno", "scdo", "slm", "slso", "stato", "to", "txpo", "uberon", "upheno", "valuesets", "vbo", "vo", "wbphenotype", "xco", "xpo", "zp" ], "languages": [ "en" ], "loaded": "2026-10-25T00:08:25.138926230", "sourceFileTimestamp": "Sun Oct 25 00:07:59 UTC 2026", "obsolete": false, "status": "LOADED", "page": "https://www.ebi.ac.uk/ols4/ontologies/chebi", "source": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/chebi", "fetchedAt": "2026-10-25T19:10:24.337Z" }, "obo": { "id": "chebi", "status": "active", "domain": "chemistry and biochemistry", "license": "CC BY 4.0", "usages": [ { "user": "https://www.rhea-db.org/", "type": null, "description": "Rhea uses CHEBI to annotate reaction participants" }, { "user": "http://zfin.org", "type": null, "description": "ZFIN uses CHEBI to annotate experiments" } ], "source": "https://obofoundry.org/registry/ontologies.jsonld", "fetchedAt": "2026-10-25T19:10:17.692Z" }, "bioportal": null, "citations": [ { "doi": "10.1093/nar/gkv1031", "count": 1084, "source": "https://api.crossref.org/works/10.1093%2Fnar%2Fgkv1031", "fetchedAt": "2026-10-25T19:10:24.328Z" } ], "git": { "commit": "7b28409008fdc8bdb22c1368a650b96b4372c55d", "ref": "master", "headTag": null, "latestTag": null, "tagCount": 0, "tagDates": [], "url": "https://github.com/ebi-chebi/ChEBI/tree/7b28409008fdc8bdb22c1368a650b96b4372c55d", "source": "https://github.com/ebi-chebi/ChEBI.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:24.324Z" }, "tib": { "portal": "TIB Terminology Service", "id": "chebi", "api": "v1", "title": "Chemical Entities of Biological Interest", "iri": "http://purl.obolibrary.org/obo/chebi", "versionIri": null, "version": null, "releaseDate": null, "terms": 0, "properties": 0, "individuals": 0, "importsFrom": [], "exportsTo": [], "languages": [], "loaded": null, "status": "SKIP", "page": "https://service.tib.eu/ts4tib/ontologies/chebi", "source": "https://service.tib.eu/ts4tib/api/ontologies/chebi", "fetchedAt": "2026-10-25T19:10:26.736Z" }, "dashboard": { "ns": "chebi", "checks": { "FP01 Open": "PASS", "FP02 Common Format": "PASS", "FP03 URIs": "PASS", "FP04 Versioning": "ERROR", "FP05 Scope": "PASS", "FP06 Textual Definitions": "WARN", "FP07 Relations": "PASS", "FP08 Documented": "PASS", "FP09 Plurality of Users": "PASS", "FP11 Locus of Authority": "PASS", "FP12 Naming Conventions": "PASS", "FP16 Maintenance": "INFO", "FP20 Responsiveness": "PASS", "ROBOT Report": "WARN" }, "robot": { "ERROR": 0, "INFO": 964, "WARN": 400509 }, "consistent": true, "unsatisfiable": 0, "classes": 224691, "axioms": 3808597, "owl2dl": false, "reusedPct": 0.02, "usedBy": [ "ado", "agro", "apollo_sv", "chmo", "cido", "clo", "cob", "cteno", "cto", "ddpheno", "dideo", "doid", "dpo", "dron", "ecto", "envo", "fbcv", "fobi", "foodon", "fypo", "genepio", "geno", "gsso", "hp", "ido", "ino", "maxo", "mco", "mondo", "mop", "mp", "nbo", "ncro", "oba", "obi", "obib", "ohd", "omp", "ons", "opmi", "ornaseq", "peco", "phipo", "poro", "pr", "proco", "rbo", "rxno", "scdo", "stato", "to", "txpo", "uberon", "upheno", "vo", "wbphenotype", "xpo", "zp" ], "oboScore": 0.56, "summary": "ERROR", "checkedVersion": "http://purl.obolibrary.org/obo/chebi/252/chebi.owl", "checkedAt": "2026-05-08T17:41:08.171Z", "page": "https://dashboard.obofoundry.org/dashboard/chebi/dashboard.html", "source": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "fetchedAt": "2026-10-25T19:10:20.368Z" }, "quality": null, "oops": { "error": "fetch failed", "checkedAt": "2026-10-25T19:09:16.999Z", "source": "data/quality/chebi.json" }, "releases": { "dates": [], "lastYear": 0, "from": null }, "bioregistry": { "prefix": "chebi", "name": "Chemical Entities of Biological Interest", "mappings": { "aberowl": "CHEBI", "bartoc": "558", "biocontext": "CHEBI", "biodivportal": "CHEBI", "bioportal": "CHEBI", "cellosaurus.resource": "ChEBI", "cheminf": "000407", "edam.data": "1174", "fairsharing": "FAIRsharing.62qk8w", "go.resource": "CHEBI", "integbio": "nbdc00027", "miriam": "chebi", "n2t": "chebi", "obofoundry": "chebi", "ols": "chebi", "ontobee": "CHEBI", "prefixcommons": "chebi", "re3data": "r3d100012626", "tib.ts": "chebi", "togoid": "Chebi", "wikidata.entity": "Q902623", "wikidata.property": "P683" }, "dependsOn": [ "bfo", "ro" ], "appearsIn": [ "cdno", "chiro", "ecocore", "ecto", "envo", "fobi", "foodon", "genepio", "maxo", "mco", "ons", "pcl", "proco", "scdo", "uberon", "xpo" ], "license": "CC-BY-4.0", "version": "256", "deprecated": false, "page": "https://bioregistry.io/chebi", "source": "https://bioregistry.io/api/registry/chebi", "fetchedAt": "2026-10-25T19:10:24.179Z" }, "artifact": { "source": "http://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi.owl", "versionIri": "http://purl.obolibrary.org/obo/chebi/256/chebi.owl", "versionInfo": "256", "etag": "\"33aa8777-65d297d923583\"", "contentType": null, "fetchedAt": "2026-10-25T19:10:25.747Z" }, "score": 86, "gross": 86, "earned": 86, "possible": 100, "qualityApplies": true, "penalty": { "score": 0, "reason": "active (last activity 2026-10-06)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.1 years → 4 × max(0, 0.1 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "A", "fair": 47, "breakdown": { "findable": { "score": 12, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 4, "max": 4, "detail": "purl.obolibrary.org" }, { "label": "Indexed in services (F4)", "pts": 5, "max": 5, "detail": "5: OLS, BioPortal, OBO Foundry, Bioregistry, FAIRsharing" }, { "label": "Citable reference (F2)", "pts": 3, "max": 3, "detail": "doi:10.1093/nar/gkv1031" } ], "notes": [] }, "accessible": { "score": 12, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "download HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 3, "max": 3, "detail": "OBO Foundry, Bioregistry" } ], "notes": [] }, "interoperable": { "score": 12, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL, OBO" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL, OBO" }, { "label": "References other vocabularies (I3)", "pts": 4, "max": 4, "detail": "imports 3: iao, ro, bfo" } ], "notes": [] }, "reusable": { "score": 11, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "CC BY 4.0" }, { "label": "Release provenance (R1.2)", "pts": 4, "max": 4, "detail": "256 (version IRI in the artefact)" }, { "label": "Community standards (R1.3)", "pts": 2, "max": 3, "detail": "OBO principles: 10/13 checks pass" } ], "notes": [ "Community standards (R1.3): OBO principles: 10/13 checks pass" ] }, "quality": { "score": 18, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 4, "max": 4, "detail": "imports BFO" }, { "label": "Standard relations (RO)", "pts": 2, "max": 2, "detail": "imports RO" }, { "label": "Logical consistency", "pts": 6, "max": 6, "detail": "consistent, 0 unsatisfiable classes (OBO Dashboard)" }, { "label": "ROBOT report: no errors", "pts": 2, "max": 2, "detail": "0 errors" }, { "label": "ROBOT report: warning density", "pts": 0, "max": 2, "detail": "400509 warnings / 224691 classes = 1.78" }, { "label": "Scaled 14/16 → 20", "pts": 4, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "ROBOT report: warning density: 400509 warnings / 224691 classes = 1.78", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 10, "max": 16, "steps": [ { "label": "Recency", "pts": 10, "max": 10, "detail": "2026-10-06 → 0.6 months (≤ 3 months)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases" } ], "notes": [ "Release cadence (12 months): 0 releases" ] }, "adoption": { "score": 11, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "2 projects" }, { "label": "Reused by other ontologies", "pts": 4, "max": 4, "detail": "115: ado, agro, apollo_sv, chmo, cido, clo…" }, { "label": "Community signal", "pts": 5, "max": 5, "detail": "max(stars 51 → 2, citations 1084 → 5)" } ], "notes": [ "Documented adopting projects: 2 projects" ] } }, "lastActivity": "2026-10-06T10:30:42.000Z", "adopterCount": 2, "reuseCount": 115, "importCount": 3, "registries": [ "OLS", "BioPortal", "OBO Foundry", "Bioregistry", "FAIRsharing" ], "evaluatedVersion": { "label": "256", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/chebi/256/chebi.owl", "inArtefact": true, "all": [ { "label": "256", "from": "version IRI in the artefact", "value": "http://purl.obolibrary.org/obo/chebi/256/chebi.owl", "inArtefact": true }, { "label": "256", "from": "version info in the artefact", "value": "256", "inArtefact": true }, { "label": "256", "from": "OLS", "value": "http://purl.obolibrary.org/obo/chebi/256/chebi.owl" }, { "label": "commit 7b28409", "from": "master at evaluation time", "value": "7b28409008fdc8bdb22c1368a650b96b4372c55d" }, { "label": "file of 2026-10-06", "from": "Last-Modified of the download", "value": "2026-10-06T10:30:42.000Z" } ] }, "evaluatedAt": "2026-10-25T19:10:27.008Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "rhea-db.org", "url": "https://www.rhea-db.org/", "note": "Rhea uses CHEBI to annotate reaction participants", "source": "OBO Foundry registry" }, { "name": "zfin.org", "url": "http://zfin.org", "note": "ZFIN uses CHEBI to annotate experiments", "source": "OBO Foundry registry" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 94, "grade": "A", "fair": null, "version": "256", "terms": 238150, "stars": 51, "license": "CC BY 4.0", "lastActivity": "2026-10-06T10:30:42.000Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 95, "grade": "A", "fair": 60, "version": "http://purl.obolibrary.org/obo/chebi/256/chebi.owl", "terms": 238150, "stars": 51, "license": "CC BY 4.0", "lastActivity": "2026-10-06T10:30:42.000Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 95, "grade": "A", "fair": 60, "version": "256", "terms": 238150, "stars": 51, "license": "CC BY 4.0", "lastActivity": "2026-10-06T10:30:42.000Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 86, "grade": "A", "fair": 47, "version": "256", "terms": 238150, "stars": 51, "license": "CC BY 4.0", "lastActivity": "2026-10-06T10:30:42.000Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 86, "grade": "A", "fair": 47, "version": "256", "terms": 238150, "stars": 51, "license": "CC BY 4.0", "lastActivity": "2026-10-06T10:30:42.000Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 85, "grade": "A", "fair": 47, "version": "256", "terms": 238150, "stars": 51, "license": "CC BY 4.0", "lastActivity": "2026-10-06T10:30:42.000Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 86 → 85 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 95 → 86 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Evaluated version: http://purl.obolibrary.org/obo/chebi/256/chebi.owl → 256" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 94 → 95 · rubric v1.0 → v2.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Evaluated version: 256 → http://purl.obolibrary.org/obo/chebi/256/chebi.owl" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/chebi/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "http://purl.obolibrary.org/obo/chebi.owl", "neuroschema:evaluatedVersion": "http://purl.obolibrary.org/obo/chebi/256/chebi.owl" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://www.ebi.ac.uk/chebi/", "prov:atTime": "2026-10-25T19:10:24.327Z" }, { "@id": "https://github.com/ebi-chebi/ChEBI", "prov:atTime": "2026-10-25T19:10:24.649Z" }, { "@id": "http://purl.obolibrary.org/obo/chebi.owl", "prov:atTime": "2026-10-25T19:10:25.251Z" }, { "@id": "http://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi.owl", "prov:atTime": "2026-10-25T19:10:25.747Z" }, { "@id": "https://github.com/ebi-chebi/ChEBI.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:24.324Z" }, { "@id": "https://api.github.com/repos/ebi-chebi/ChEBI", "prov:atTime": "2026-10-25T19:10:24.678Z" }, { "@id": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/chebi", "prov:atTime": "2026-10-25T19:10:24.337Z" }, { "@id": "https://service.tib.eu/ts4tib/api/ontologies/chebi", "prov:atTime": "2026-10-25T19:10:26.736Z" }, { "@id": "https://obofoundry.org/registry/ontologies.jsonld", "prov:atTime": "2026-10-25T19:10:17.692Z" }, { "@id": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json", "prov:atTime": "2026-10-25T19:10:20.368Z" }, { "@id": "https://bioregistry.io/api/registry/chebi", "prov:atTime": "2026-10-25T19:10:24.179Z" }, { "@id": "https://api.crossref.org/works/10.1093%2Fnar%2Fgkv1031", "prov:atTime": "2026-10-25T19:10:24.328Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:27.008Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#chebi" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#chebi" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#chebi" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#chebi" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#chebi" } ] } }, { "id": "bids", "acronym": "BIDS", "name": "Brain Imaging Data Structure", "category": "imaging", "kind": "data-standard", "description": "A community standard for organising and describing neuroimaging and related data (MRI, EEG, MEG, iEEG, PET, microscopy, and more). Its rules are published as a machine-readable YAML schema.", "formats": [ "YAML schema", "JSON" ], "species": [ "Human", "Multi-species" ], "maintainer": "BIDS community", "license": "CC BY 4.0", "homepage": "https://bids.neuroimaging.io/", "repository": "https://github.com/bids-standard/bids-specification", "publications": [ { "title": "The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments", "doi": "10.1038/sdata.2016.44", "year": 2016 } ], "usedBy": [ { "name": "OpenNeuro", "url": "https://openneuro.org/", "note": "Required dataset format" }, { "name": "fMRIPrep", "url": "https://fmriprep.org/", "note": "BIDS App input" }, { "name": "MNE-BIDS", "url": "https://mne.tools/mne-bids/", "note": "EEG/MEG BIDS conversion" } ], "tags": [ "MRI", "EEG", "MEG", "data organisation" ], "url": "https://neuroschema.org/o/bids/", "evaluation": { "links": { "homepage": { "url": "https://bids.neuroimaging.io/", "code": 200, "state": "ok", "lastModified": "2026-10-22T06:17:22.000Z", "checkedAt": "2026-10-25T19:10:24.580Z" }, "repository": { "url": "https://github.com/bids-standard/bids-specification", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:24.771Z" }, "download": null }, "github": { "slug": "bids-standard/bids-specification", "stars": 370, "forks": 209, "openIssues": 367, "pushedAt": "2026-10-22T23:55:41Z", "archived": false, "license": "CC-BY-4.0", "latestRelease": { "tag": "v1.11.2", "date": "2026-09-29T19:10:37Z", "url": "https://github.com/bids-standard/bids-specification/releases/tag/v1.11.2" }, "source": "https://api.github.com/repos/bids-standard/bids-specification", "fetchedAt": "2026-10-25T19:10:24.679Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [ { "doi": "10.1038/sdata.2016.44", "count": 1845, "source": "https://api.crossref.org/works/10.1038%2Fsdata.2016.44", "fetchedAt": "2026-10-25T18:49:27.435Z", "stale": true, "staleReason": "HTTP 429", "lastAttemptAt": "2026-10-25T19:10:24.318Z" } ], "git": { "commit": "8973fdf11d3c6c8ce40fa7897dc712667b539b0e", "ref": "master", "headTag": null, "latestTag": { "name": "schema-2.0.1", "commit": "14d8b687d55d992c4cf4ac78ac117f03de61778c", "url": "https://github.com/bids-standard/bids-specification/releases/tag/schema-2.0.1" }, "tagCount": 71, "tagDates": [], "url": "https://github.com/bids-standard/bids-specification/tree/8973fdf11d3c6c8ce40fa7897dc712667b539b0e", "source": "https://github.com/bids-standard/bids-specification.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:24.665Z" }, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [ "2019-01-10", "2019-03-04", "2019-08-14", "2020-02-12", "2020-04-14", "2020-06-11", "2020-10-13", "2021-02-23", "2021-04-22", "2022-02-15", "2022-10-29", "2023-11-20", "2024-09-06", "2025-09-03", "2026-02-04", "2026-02-19", "2026-09-29" ], "lastYear": 3, "from": "GitHub releases" }, "bioregistry": null, "artifact": null, "score": 58, "gross": 58, "earned": 46, "possible": 80, "qualityApplies": false, "penalty": { "score": 0, "reason": "active (last activity 2026-10-22)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.0 years → 4 × max(0, 0.0 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "C", "fair": 24, "breakdown": { "findable": { "score": 3, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 3, "max": 3, "detail": "doi:10.1038/sdata.2016.44" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "repository HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 5, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "YAML schema" }, { "label": "Semantic-web IRIs (I2)", "pts": 0, "max": 3, "detail": "no RDF/OWL/JSON-LD representation" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "Semantic-web IRIs (I2): no RDF/OWL/JSON-LD representation", "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 7, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "CC BY 4.0" }, { "label": "Release provenance (R1.2)", "pts": 2, "max": 4, "detail": "v1.11.2 (latest GitHub release); not declared inside the artefact" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Release provenance (R1.2): v1.11.2 (latest GitHub release); not declared inside the artefact", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Not applicable", "pts": 0, "max": 0, "detail": "data-standard without an OWL/OBO/RDF artefact; total scaled from 80 to 100" } ], "notes": [], "applicable": false }, "maintenance": { "score": 13, "max": 16, "steps": [ { "label": "Recency", "pts": 10, "max": 10, "detail": "2026-10-22 → 0.1 months (≤ 3 months)" }, { "label": "Release cadence (12 months)", "pts": 3, "max": 6, "detail": "3 releases (GitHub releases)" } ], "notes": [ "Release cadence (12 months): 3 releases (GitHub releases)" ] }, "adoption": { "score": 9, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 4, "max": 7, "detail": "3 projects" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 5, "max": 5, "detail": "max(stars 370 → 4, citations 1845 → 5)" } ], "notes": [ "Documented adopting projects: 3 projects", "Reused by other ontologies: 0" ] } }, "lastActivity": "2026-10-22T23:55:41Z", "adopterCount": 3, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": { "label": "v1.11.2", "from": "latest GitHub release", "value": "https://github.com/bids-standard/bids-specification/releases/tag/v1.11.2", "all": [ { "label": "v1.11.2", "from": "latest GitHub release", "value": "https://github.com/bids-standard/bids-specification/releases/tag/v1.11.2" }, { "label": "schema-2.0.1 + commit 8973fdf", "from": "latest release tag; master evaluated at commit", "value": "8973fdf11d3c6c8ce40fa7897dc712667b539b0e", "release": "schema-2.0.1" }, { "label": "commit 8973fdf", "from": "master at evaluation time", "value": "8973fdf11d3c6c8ce40fa7897dc712667b539b0e" } ] }, "evaluatedAt": "2026-10-25T19:10:25.125Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "OpenNeuro", "url": "https://openneuro.org/", "note": "Required dataset format", "source": "curated" }, { "name": "fMRIPrep", "url": "https://fmriprep.org/", "note": "BIDS App input", "source": "curated" }, { "name": "MNE-BIDS", "url": "https://mne.tools/mne-bids/", "note": "EEG/MEG BIDS conversion", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 92, "grade": "A", "fair": null, "version": null, "terms": null, "stars": 370, "license": "CC-BY-4.0", "lastActivity": "2026-10-22T23:55:41Z", "adopters": 3, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 78, "grade": "B", "fair": 40, "version": "commit 8973fdf", "terms": null, "stars": 370, "license": "CC-BY-4.0", "lastActivity": "2026-10-22T23:55:41Z", "adopters": 3, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 83, "grade": "A", "fair": 45, "version": "v1.11.2", "terms": null, "stars": 370, "license": "CC-BY-4.0", "lastActivity": "2026-10-22T23:55:41Z", "adopters": 3, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 54, "grade": "D", "fair": 24, "version": "schema-2.0.1 + commit 8973fdf", "terms": null, "stars": 370, "license": "CC-BY-4.0", "lastActivity": "2026-10-22T23:55:41Z", "adopters": 3, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 58, "grade": "C", "fair": 24, "version": "v1.11.2", "terms": null, "stars": 370, "license": "CC-BY-4.0", "lastActivity": "2026-10-22T23:55:41Z", "adopters": 3, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 50, "grade": "D", "fair": 21, "version": "schema-2.0.1 + commit 8973fdf", "terms": null, "stars": 370, "license": "CC-BY-4.0", "lastActivity": "2026-10-22T23:55:41Z", "adopters": 3, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 58 → 50 (grade C → D) · rubric v3.0 → v3.3" }, { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Evaluated version: v1.11.2 → schema-2.0.1 + commit 8973fdf" }, { "at": "2026-10-25T19:10:30.278Z", "runId": "2026-10-25T19-10-16Z", "what": "Score: 54 → 58 (grade D → C)" }, { "at": "2026-10-25T19:10:30.278Z", "runId": "2026-10-25T19-10-16Z", "what": "Evaluated version: schema-2.0.1 + commit 8973fdf → v1.11.2" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 83 → 54 (grade A → D) · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Evaluated version: v1.11.2 → schema-2.0.1 + commit 8973fdf" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 78 → 83 (grade B → A) · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Evaluated version: commit 8973fdf → v1.11.2" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 92 → 78 (grade A → B) · rubric v1.0 → v2.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Evaluated version: — → commit 8973fdf" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/bids/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://github.com/bids-standard/bids-specification", "neuroschema:evaluatedVersion": "https://github.com/bids-standard/bids-specification/releases/tag/v1.11.2" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://bids.neuroimaging.io/", "prov:atTime": "2026-10-25T19:10:24.580Z" }, { "@id": "https://github.com/bids-standard/bids-specification", "prov:atTime": "2026-10-25T19:10:24.771Z" }, { "@id": "https://github.com/bids-standard/bids-specification.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:24.665Z" }, { "@id": "https://api.github.com/repos/bids-standard/bids-specification", "prov:atTime": "2026-10-25T19:10:24.679Z" }, { "@id": "https://api.crossref.org/works/10.1038%2Fsdata.2016.44", "prov:atTime": "2026-10-25T18:49:27.435Z", "neuroschema:carriedForward": true } ] }, "prov:generatedAtTime": "2026-10-25T19:10:25.125Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#bids" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#bids" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#bids" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#bids" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#bids" } ] } }, { "id": "nidm", "acronym": "NIDM", "name": "Neuroimaging Data Model", "category": "imaging", "kind": "schema", "description": "A family of W3C PROV-based specifications for describing neuroimaging experiments, workflows and results (NIDM-Experiment, NIDM-Workflows, NIDM-Results).", "formats": [ "RDF", "Turtle", "JSON-LD" ], "species": [ "Human" ], "maintainer": "INCF NIDASH task force", "homepage": "http://nidm.nidash.org/", "repository": "https://github.com/incf-nidash/nidm-specs", "publications": [ { "title": "Sharing brain mapping statistical results with the neuroimaging data model", "doi": "10.1038/sdata.2016.102", "year": 2016 } ], "usedBy": [ { "name": "NeuroVault", "url": "https://neurovault.org/", "note": "Accepts NIDM-Results uploads" }, { "name": "ReproNim", "url": "https://www.repronim.org/", "note": "Reproducible neuroimaging tools" } ], "tags": [ "provenance", "fMRI", "results", "RDF" ], "url": "https://neuroschema.org/o/nidm/", "evaluation": { "links": { "homepage": { "url": "http://nidm.nidash.org/", "code": 200, "state": "ok", "lastModified": "2021-07-02T17:49:59.000Z", "checkedAt": "2026-10-25T19:10:25.366Z" }, "repository": { "url": "https://github.com/incf-nidash/nidm-specs", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:24.772Z" }, "download": null }, "github": { "slug": "incf-nidash/nidm-specs", "stars": 33, "forks": 31, "openIssues": 58, "pushedAt": "2023-03-22T15:46:01Z", "archived": false, "license": null, "source": "https://api.github.com/repos/incf-nidash/nidm-specs", "fetchedAt": "2026-10-25T19:10:24.876Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [ { "doi": "10.1038/sdata.2016.102", "count": 55, "source": "https://api.crossref.org/works/10.1038%2Fsdata.2016.102", "fetchedAt": "2026-10-25T19:10:24.448Z" } ], "git": { "commit": "b568043b81e75110d63b994c00aa17275a5f4614", "ref": "master", "headTag": null, "latestTag": { "name": "NIDM-Results_1.3.0", "commit": "bd3129e9bf3acbc15e4ae7acfd7aee7ea1093b7a", "url": "https://github.com/incf-nidash/nidm-specs/releases/tag/NIDM-Results_1.3.0" }, "tagCount": 6, "tagDates": [], "url": "https://github.com/incf-nidash/nidm-specs/tree/b568043b81e75110d63b994c00aa17275a5f4614", "source": "https://github.com/incf-nidash/nidm-specs.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:24.479Z" }, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [], "lastYear": 0, "from": null }, "bioregistry": null, "artifact": null, "score": 23, "gross": 33, "earned": 26, "possible": 80, "qualityApplies": false, "penalty": { "score": -10, "reason": "3.6 years → 4 × max(0, 3.6 − 1)", "steps": [ { "label": "Time since last activity", "pts": -10, "detail": "3.6 years → 4 × max(0, 3.6 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 22, "breakdown": { "findable": { "score": 3, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 3, "max": 3, "detail": "doi:10.1038/sdata.2016.102" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "repository HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "RDF, Turtle, JSON-LD" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "RDF, Turtle, JSON-LD" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 2, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 2, "max": 4, "detail": "NIDM-Results_1.3.0 (release tag); not declared inside the artefact" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): NIDM-Results_1.3.0 (release tag); not declared inside the artefact", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Not applicable", "pts": 0, "max": 0, "detail": "schema without an OWL/OBO/RDF artefact; total scaled from 80 to 100" } ], "notes": [], "applicable": false }, "maintenance": { "score": 0, "max": 16, "steps": [ { "label": "Recency", "pts": 0, "max": 10, "detail": "2023-03-22 → 43.1 months (older / unknown)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases" } ], "notes": [ "Recency: 2023-03-22 → 43.1 months (older / unknown)", "Release cadence (12 months): 0 releases" ] }, "adoption": { "score": 4, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "2 projects" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 2, "max": 5, "detail": "max(stars 33 → 2, citations 55 → 2)" } ], "notes": [ "Documented adopting projects: 2 projects", "Reused by other ontologies: 0", "Community signal: max(stars 33 → 2, citations 55 → 2)" ] } }, "lastActivity": "2023-03-22T15:46:01Z", "adopterCount": 2, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": { "label": "NIDM-Results_1.3.0 + commit b568043", "from": "latest release tag; master evaluated at commit", "value": "b568043b81e75110d63b994c00aa17275a5f4614", "release": "NIDM-Results_1.3.0", "all": [ { "label": "NIDM-Results_1.3.0 + commit b568043", "from": "latest release tag; master evaluated at commit", "value": "b568043b81e75110d63b994c00aa17275a5f4614", "release": "NIDM-Results_1.3.0" }, { "label": "commit b568043", "from": "master at evaluation time", "value": "b568043b81e75110d63b994c00aa17275a5f4614" } ] }, "evaluatedAt": "2026-10-25T19:10:25.633Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "NeuroVault", "url": "https://neurovault.org/", "note": "Accepts NIDM-Results uploads", "source": "curated" }, { "name": "ReproNim", "url": "https://www.repronim.org/", "note": "Reproducible neuroimaging tools", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 47, "grade": "D", "fair": null, "version": null, "terms": null, "stars": 33, "license": null, "lastActivity": "2023-03-22T15:46:01Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 49, "grade": "D", "fair": 35, "version": "commit b568043", "terms": null, "stars": 33, "license": null, "lastActivity": "2023-03-22T15:46:01Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 44, "grade": "D", "fair": 40, "version": "NIDM-Results_1.3.0 + commit b568043", "terms": null, "stars": 33, "license": null, "lastActivity": "2023-03-22T15:46:01Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 23, "grade": "D", "fair": 22, "version": "NIDM-Results_1.3.0 + commit b568043", "terms": null, "stars": 33, "license": null, "lastActivity": "2023-03-22T15:46:01Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 23, "grade": "E", "fair": 22, "version": "NIDM-Results_1.3.0 + commit b568043", "terms": null, "stars": 33, "license": null, "lastActivity": "2023-03-22T15:46:01Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 19, "grade": "E", "fair": 19, "version": "NIDM-Results_1.3.0 + commit b568043", "terms": null, "stars": 33, "license": null, "lastActivity": "2023-03-22T15:46:01Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 23 → 19 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 44 → 23 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 49 → 44 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Evaluated version: commit b568043 → NIDM-Results_1.3.0 + commit b568043" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 47 → 49 · rubric v1.0 → v2.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Evaluated version: — → commit b568043" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/nidm/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://github.com/incf-nidash/nidm-specs", "neuroschema:evaluatedVersion": "b568043b81e75110d63b994c00aa17275a5f4614" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "http://nidm.nidash.org/", "prov:atTime": "2026-10-25T19:10:25.366Z" }, { "@id": "https://github.com/incf-nidash/nidm-specs", "prov:atTime": "2026-10-25T19:10:24.772Z" }, { "@id": "https://github.com/incf-nidash/nidm-specs.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:24.479Z" }, { "@id": "https://api.github.com/repos/incf-nidash/nidm-specs", "prov:atTime": "2026-10-25T19:10:24.876Z" }, { "@id": "https://api.crossref.org/works/10.1038%2Fsdata.2016.102", "prov:atTime": "2026-10-25T19:10:24.448Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:25.633Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#nidm" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#nidm" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#nidm" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#nidm" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#nidm" } ] } }, { "id": "hed", "acronym": "HED", "name": "Hierarchical Event Descriptors", "category": "imaging", "kind": "vocabulary", "description": "A structured vocabulary and annotation system for describing experimental events in time-series data such as EEG, MEG, fMRI and behavior.", "formats": [ "XML", "MediaWiki", "TSV", "OWL" ], "species": [ "Human", "Multi-species" ], "maintainer": "HED Working Group", "homepage": "https://www.hedtags.org/", "repository": "https://github.com/hed-standard/hed-schemas", "publications": [ { "title": "Building FAIR Functionality: Annotating Events in Time Series Data Using Hierarchical Event Descriptors (HED)", "doi": "10.1007/s12021-021-09537-4", "year": 2022 } ], "usedBy": [ { "name": "BIDS", "url": "https://bids.neuroimaging.io/", "note": "Event annotation in events.tsv sidecars" }, { "name": "EEGLAB", "url": "https://sccn.ucsd.edu/eeglab/", "note": "HED tools plugin" } ], "tags": [ "events", "EEG", "annotation" ], "url": "https://neuroschema.org/o/hed/", "evaluation": { "links": { "homepage": { "url": "https://www.hedtags.org/", "code": 200, "state": "ok", "lastModified": "2026-06-24T12:07:42.000Z", "checkedAt": "2026-10-25T19:10:25.615Z" }, "repository": { "url": "https://github.com/hed-standard/hed-schemas", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:25.722Z" }, "download": null }, "github": { "slug": "hed-standard/hed-schemas", "stars": 3, "forks": 10, "openIssues": 12, "pushedAt": "2026-10-25T15:39:31Z", "archived": false, "license": "CC-BY-4.0", "latestRelease": { "tag": "mouse_v1.0.0", "date": "2026-10-25T15:39:31Z", "url": "https://github.com/hed-standard/hed-schemas/releases/tag/mouse_v1.0.0" }, "source": "https://api.github.com/repos/hed-standard/hed-schemas", "fetchedAt": "2026-10-25T19:10:25.608Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [ { "doi": "10.1007/s12021-021-09537-4", "count": 12, "source": "https://api.crossref.org/works/10.1007%2Fs12021-021-09537-4", "fetchedAt": "2026-10-25T19:10:25.202Z" } ], "git": { "commit": "ffa376f57b531136ca2f444feb6339c4b3f42432", "ref": "main", "headTag": "mouse_v1.0.0", "latestTag": { "name": "v8.5.0", "commit": "19996a23d5a11bcf50af08bd5a62da32a2ca4fad", "url": "https://github.com/hed-standard/hed-schemas/releases/tag/v8.5.0" }, "tagCount": 12, "tagDates": [], "url": "https://github.com/hed-standard/hed-schemas/tree/ffa376f57b531136ca2f444feb6339c4b3f42432", "source": "https://github.com/hed-standard/hed-schemas.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:25.269Z" }, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [ "2024-06-10", "2024-07-16", "2024-09-08", "2024-10-30", "2025-06-01", "2025-06-09", "2025-06-10", "2026-10-15", "2026-10-16", "2026-10-17", "2026-10-25" ], "lastYear": 4, "from": "GitHub releases" }, "bioregistry": null, "artifact": null, "score": 45, "gross": 45, "earned": 45, "possible": 100, "qualityApplies": true, "penalty": { "score": 0, "reason": "active (last activity 2026-10-25)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.0 years → 4 × max(0, 0.0 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "D", "fair": 27, "breakdown": { "findable": { "score": 3, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 3, "max": 3, "detail": "doi:10.1007/s12021-021-09537-4" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "repository HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 7, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "CC-BY-4.0" }, { "label": "Release provenance (R1.2)", "pts": 2, "max": 4, "detail": "mouse_v1.0.0 (latest GitHub release); not declared inside the artefact" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Release provenance (R1.2): mouse_v1.0.0 (latest GitHub release); not declared inside the artefact", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 0, "max": 4, "detail": "no BFO/COB/DOLCE import found" }, { "label": "Standard relations (RO)", "pts": 0, "max": 2, "detail": "does not import the Relation Ontology" }, { "label": "Logical consistency", "pts": 0, "max": 6, "detail": "never checked by a reasoner" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "ROBOT report: warning density", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "Scaled 0/16 → 20", "pts": 0, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "Upper-ontology alignment: no BFO/COB/DOLCE import found", "Standard relations (RO): does not import the Relation Ontology", "Logical consistency: never checked by a reasoner", "ROBOT report: no errors: no ROBOT report available", "ROBOT report: warning density: no ROBOT report available", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 15, "max": 16, "steps": [ { "label": "Recency", "pts": 10, "max": 10, "detail": "2026-10-25 → 0.0 months (≤ 3 months)" }, { "label": "Release cadence (12 months)", "pts": 5, "max": 6, "detail": "4 releases (GitHub releases)" } ], "notes": [ "Release cadence (12 months): 4 releases (GitHub releases)" ] }, "adoption": { "score": 3, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "2 projects" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 1, "max": 5, "detail": "max(stars 3 → 0, citations 12 → 1)" } ], "notes": [ "Documented adopting projects: 2 projects", "Reused by other ontologies: 0", "Community signal: max(stars 3 → 0, citations 12 → 1)" ] } }, "lastActivity": "2026-10-25T15:39:31Z", "adopterCount": 2, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": { "label": "mouse_v1.0.0", "from": "latest GitHub release", "value": "https://github.com/hed-standard/hed-schemas/releases/tag/mouse_v1.0.0", "all": [ { "label": "mouse_v1.0.0", "from": "latest GitHub release", "value": "https://github.com/hed-standard/hed-schemas/releases/tag/mouse_v1.0.0" }, { "label": "mouse_v1.0.0", "from": "git tag on the evaluated commit", "value": "ffa376f57b531136ca2f444feb6339c4b3f42432" }, { "label": "v8.5.0 + commit ffa376f", "from": "latest release tag; main evaluated at commit", "value": "ffa376f57b531136ca2f444feb6339c4b3f42432", "release": "v8.5.0" }, { "label": "commit ffa376f", "from": "main at evaluation time", "value": "ffa376f57b531136ca2f444feb6339c4b3f42432" } ] }, "evaluatedAt": "2026-10-25T19:10:26.129Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "BIDS", "url": "https://bids.neuroimaging.io/", "note": "Event annotation in events.tsv sidecars", "source": "curated" }, { "name": "EEGLAB", "url": "https://sccn.ucsd.edu/eeglab/", "note": "HED tools plugin", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 79, "grade": "B", "fair": null, "version": null, "terms": null, "stars": 3, "license": "CC-BY-4.0", "lastActivity": "2026-10-25T15:39:31Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 72, "grade": "B", "fair": 45, "version": "commit ffa376f", "terms": null, "stars": 3, "license": "CC-BY-4.0", "lastActivity": "2026-10-25T15:39:31Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 77, "grade": "B", "fair": 50, "version": "mouse_v1.0.0", "terms": null, "stars": 3, "license": "CC-BY-4.0", "lastActivity": "2026-10-25T15:39:31Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 40, "grade": "D", "fair": 27, "version": "mouse_v1.0.0", "terms": null, "stars": 3, "license": "CC-BY-4.0", "lastActivity": "2026-10-25T15:39:31Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 45, "grade": "D", "fair": 27, "version": "mouse_v1.0.0", "terms": null, "stars": 3, "license": "CC-BY-4.0", "lastActivity": "2026-10-25T15:39:31Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 37, "grade": "E", "fair": 24, "version": "mouse_v1.0.0", "terms": null, "stars": 3, "license": "CC-BY-4.0", "lastActivity": "2026-10-25T15:39:31Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 45 → 37 (grade D → E) · rubric v3.0 → v3.3" }, { "at": "2026-10-25T19:10:30.278Z", "runId": "2026-10-25T19-10-16Z", "what": "Score: 40 → 45" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 77 → 40 (grade B → D) · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 72 → 77 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Evaluated version: commit ffa376f → mouse_v1.0.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 79 → 72 · rubric v1.0 → v2.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Evaluated version: — → commit ffa376f" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/hed/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://github.com/hed-standard/hed-schemas", "neuroschema:evaluatedVersion": "https://github.com/hed-standard/hed-schemas/releases/tag/mouse_v1.0.0" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://www.hedtags.org/", "prov:atTime": "2026-10-25T19:10:25.615Z" }, { "@id": "https://github.com/hed-standard/hed-schemas", "prov:atTime": "2026-10-25T19:10:25.722Z" }, { "@id": "https://github.com/hed-standard/hed-schemas.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:25.269Z" }, { "@id": "https://api.github.com/repos/hed-standard/hed-schemas", "prov:atTime": "2026-10-25T19:10:25.608Z" }, { "@id": "https://api.crossref.org/works/10.1007%2Fs12021-021-09537-4", "prov:atTime": "2026-10-25T19:10:25.202Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:26.129Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#hed" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#hed" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#hed" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#hed" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#hed" } ] } }, { "id": "nemo", "acronym": "NEMO", "name": "Neural ElectroMagnetic Ontologies", "category": "imaging", "kind": "ontology", "description": "Ontologies for event-related potential (ERP) data and analysis in EEG and MEG studies. A legacy resource.", "formats": [ "OWL" ], "species": [ "Human" ], "maintainer": "University of Oregon", "homepage": "https://bioportal.bioontology.org/ontologies/NEMO", "bioportal": "NEMO", "status": "legacy", "publications": [], "usedBy": [], "tags": [ "ERP", "EEG", "MEG" ], "url": "https://neuroschema.org/o/nemo/", "evaluation": { "links": { "homepage": { "url": "https://bioportal.bioontology.org/ontologies/NEMO", "code": 403, "state": "blocked", "checkedAt": "2026-10-25T19:10:25.660Z" }, "repository": null, "download": null }, "github": null, "ols": null, "obo": null, "bioportal": null, "citations": [], "git": null, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [], "lastYear": 0, "from": null }, "bioregistry": null, "artifact": null, "score": 0, "gross": 12, "earned": 12, "possible": 100, "qualityApplies": true, "penalty": { "score": -15, "reason": "no commits, releases or dated files found; marked legacy", "steps": [ { "label": "No activity evidence", "pts": -5, "detail": "no commits, releases or dated files found" }, { "label": "Inactive status", "pts": -10, "detail": "marked legacy" } ] }, "grade": "E", "fair": 12, "breakdown": { "findable": { "score": 1, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 1, "max": 5, "detail": "1: BioPortal" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): 1: BioPortal", "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 3, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 403" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 0, "max": 6, "detail": "no download or repository listed" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Artefact retrievable over HTTP(S) (A1): no download or repository listed", "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 0, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 0, "max": 4, "detail": "no version in artefact, registry or release tags" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): no version in artefact, registry or release tags", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 0, "max": 4, "detail": "no BFO/COB/DOLCE import found" }, { "label": "Standard relations (RO)", "pts": 0, "max": 2, "detail": "does not import the Relation Ontology" }, { "label": "Logical consistency", "pts": 0, "max": 6, "detail": "never checked by a reasoner" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "ROBOT report: warning density", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "Scaled 0/16 → 20", "pts": 0, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "Upper-ontology alignment: no BFO/COB/DOLCE import found", "Standard relations (RO): does not import the Relation Ontology", "Logical consistency: never checked by a reasoner", "ROBOT report: no errors: no ROBOT report available", "ROBOT report: warning density: no ROBOT report available", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 0, "max": 16, "steps": [ { "label": "Recency", "pts": 0, "max": 10, "detail": "no activity evidence" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases" } ], "notes": [ "Recency: no activity evidence", "Release cadence (12 months): 0 releases" ] }, "adoption": { "score": 0, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 0, "max": 7, "detail": "0 projects" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 0, "max": 5, "detail": "max(stars 0 → 0, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 0 projects", "Reused by other ontologies: 0", "Community signal: max(stars 0 → 0, citations 0 → 0)" ] } }, "lastActivity": null, "adopterCount": 0, "reuseCount": 0, "importCount": 0, "registries": [ "BioPortal" ], "evaluatedVersion": null, "evaluatedAt": "2026-10-25T19:10:25.661Z", "runId": "2026-10-25T19-10-16Z", "adopters": [] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 23, "grade": "D", "fair": null, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "blocked" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 25, "grade": "D", "fair": 25, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "blocked" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 10, "grade": "D", "fair": 25, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "blocked" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 0, "grade": "D", "fair": 12, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "blocked" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 0, "grade": "E", "fair": 12, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "blocked" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 0, "grade": "E", "fair": 12, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "blocked" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 10 → 0 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 25 → 10 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 23 → 25 · rubric v1.0 → v2.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/nemo/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://bioportal.bioontology.org/ontologies/NEMO", "neuroschema:evaluatedVersion": null }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://bioportal.bioontology.org/ontologies/NEMO", "prov:atTime": "2026-10-25T19:10:25.660Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:25.661Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#nemo" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#nemo" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#nemo" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#nemo" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#nemo" } ] } }, { "id": "nwb", "acronym": "NWB", "name": "Neurodata Without Borders Schema", "category": "physiology", "kind": "data-standard", "description": "A data standard and schema for neurophysiology: extracellular and intracellular electrophysiology, optical physiology, behavior and stimuli, extensible via neurodata extensions (NDX).", "formats": [ "YAML schema", "HDF5", "Zarr" ], "species": [ "Multi-species" ], "maintainer": "NWB team", "license": "BSD-3-Clause", "homepage": "https://www.nwb.org/", "repository": "https://github.com/NeurodataWithoutBorders/nwb-schema", "publications": [ { "title": "The Neurodata Without Borders ecosystem for neurophysiological data science", "doi": "10.7554/eLife.78362", "year": 2022 } ], "usedBy": [ { "name": "DANDI Archive", "url": "https://dandiarchive.org/", "note": "Primary data format" }, { "name": "Allen Brain Observatory", "url": "https://portal.brain-map.org/explore/circuits", "note": "Data distribution" }, { "name": "SpikeInterface", "url": "https://spikeinterface.readthedocs.io/", "note": "Read/write support" } ], "tags": [ "electrophysiology", "ophys", "behavior", "HDF5" ], "url": "https://neuroschema.org/o/nwb/", "evaluation": { "links": { "homepage": { "url": "https://www.nwb.org/", "code": 200, "state": "ok", "resolvedUrl": "https://nwb.org/", "lastModified": "2026-10-11T14:27:28.000Z", "checkedAt": "2026-10-25T19:10:26.318Z" }, "repository": { "url": "https://github.com/NeurodataWithoutBorders/nwb-schema", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:26.052Z" }, "download": null }, "github": { "slug": "NeurodataWithoutBorders/nwb-schema", "stars": 67, "forks": 16, "openIssues": 138, "pushedAt": "2026-08-21T20:14:39Z", "archived": false, "license": null, "latestRelease": { "tag": "2.11.0", "date": "2026-08-21T20:15:40Z", "url": "https://github.com/NeurodataWithoutBorders/nwb-schema/releases/tag/2.11.0" }, "source": "https://api.github.com/repos/NeurodataWithoutBorders/nwb-schema", "fetchedAt": "2026-10-25T19:10:26.111Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [ { "doi": "10.7554/eLife.78362", "count": 167, "source": "https://api.crossref.org/works/10.7554%2FeLife.78362", "fetchedAt": "2026-10-25T19:10:25.731Z" } ], "git": { "commit": "3ada52e0152847c937e168fd9565d95b37582112", "ref": "dev", "headTag": "2.11.0", "latestTag": { "name": "2.11.0", "commit": "3ada52e0152847c937e168fd9565d95b37582112", "url": "https://github.com/NeurodataWithoutBorders/nwb-schema/releases/tag/2.11.0" }, "tagCount": 17, "tagDates": [], "url": "https://github.com/NeurodataWithoutBorders/nwb-schema/tree/3ada52e0152847c937e168fd9565d95b37582112", "source": "https://github.com/NeurodataWithoutBorders/nwb-schema.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:25.784Z" }, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [ "2019-03-22", "2019-09-17", "2020-01-07", "2020-01-16", "2020-03-03", "2020-04-14", "2020-05-30", "2021-05-12", "2021-08-12", "2022-06-14", "2023-01-17", "2024-02-07", "2024-11-25", "2025-06-26", "2026-06-18", "2026-08-21" ], "lastYear": 2, "from": "GitHub releases" }, "bioregistry": null, "artifact": null, "score": 54, "gross": 54, "earned": 43, "possible": 80, "qualityApplies": false, "penalty": { "score": 0, "reason": "active (last activity 2026-08-21)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.2 years → 4 × max(0, 0.2 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "D", "fair": 24, "breakdown": { "findable": { "score": 3, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 3, "max": 3, "detail": "doi:10.7554/eLife.78362" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "repository HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 5, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "YAML schema" }, { "label": "Semantic-web IRIs (I2)", "pts": 0, "max": 3, "detail": "no RDF/OWL/JSON-LD representation" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "Semantic-web IRIs (I2): no RDF/OWL/JSON-LD representation", "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 7, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "BSD-3-Clause" }, { "label": "Release provenance (R1.2)", "pts": 2, "max": 4, "detail": "2.11.0 (latest GitHub release); not declared inside the artefact" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Release provenance (R1.2): 2.11.0 (latest GitHub release); not declared inside the artefact", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Not applicable", "pts": 0, "max": 0, "detail": "data-standard without an OWL/OBO/RDF artefact; total scaled from 80 to 100" } ], "notes": [], "applicable": false }, "maintenance": { "score": 13, "max": 16, "steps": [ { "label": "Recency", "pts": 10, "max": 10, "detail": "2026-08-21 → 2.1 months (≤ 3 months)" }, { "label": "Release cadence (12 months)", "pts": 3, "max": 6, "detail": "2 releases (GitHub releases)" } ], "notes": [ "Release cadence (12 months): 2 releases (GitHub releases)" ] }, "adoption": { "score": 6, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 4, "max": 7, "detail": "3 projects" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 2, "max": 5, "detail": "max(stars 67 → 2, citations 167 → 2)" } ], "notes": [ "Documented adopting projects: 3 projects", "Reused by other ontologies: 0", "Community signal: max(stars 67 → 2, citations 167 → 2)" ] } }, "lastActivity": "2026-08-21T20:15:40Z", "adopterCount": 3, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": { "label": "2.11.0", "from": "latest GitHub release", "value": "https://github.com/NeurodataWithoutBorders/nwb-schema/releases/tag/2.11.0", "all": [ { "label": "2.11.0", "from": "latest GitHub release", "value": "https://github.com/NeurodataWithoutBorders/nwb-schema/releases/tag/2.11.0" }, { "label": "2.11.0", "from": "git tag on the evaluated commit", "value": "3ada52e0152847c937e168fd9565d95b37582112" }, { "label": "2.11.0 + commit 3ada52e", "from": "latest release tag; dev evaluated at commit", "value": "3ada52e0152847c937e168fd9565d95b37582112", "release": "2.11.0" }, { "label": "commit 3ada52e", "from": "dev at evaluation time", "value": "3ada52e0152847c937e168fd9565d95b37582112" } ] }, "evaluatedAt": "2026-10-25T19:10:26.623Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "DANDI Archive", "url": "https://dandiarchive.org/", "note": "Primary data format", "source": "curated" }, { "name": "Allen Brain Observatory", "url": "https://portal.brain-map.org/explore/circuits", "note": "Data distribution", "source": "curated" }, { "name": "SpikeInterface", "url": "https://spikeinterface.readthedocs.io/", "note": "Read/write support", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 89, "grade": "A", "fair": null, "version": null, "terms": null, "stars": 67, "license": null, "lastActivity": "2026-08-21T20:14:39Z", "adopters": 3, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 76, "grade": "B", "fair": 40, "version": "commit 3ada52e", "terms": null, "stars": 67, "license": null, "lastActivity": "2026-08-21T20:14:39Z", "adopters": 3, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 81, "grade": "A", "fair": 45, "version": "2.11.0", "terms": null, "stars": 67, "license": null, "lastActivity": "2026-08-21T20:15:40Z", "adopters": 3, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 50, "grade": "D", "fair": 24, "version": "2.11.0", "terms": null, "stars": 67, "license": null, "lastActivity": "2026-08-21T20:14:39Z", "adopters": 3, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 54, "grade": "D", "fair": 24, "version": "2.11.0", "terms": null, "stars": 67, "license": null, "lastActivity": "2026-08-21T20:15:40Z", "adopters": 3, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 46, "grade": "D", "fair": 21, "version": "2.11.0", "terms": null, "stars": 67, "license": null, "lastActivity": "2026-08-21T20:14:39Z", "adopters": 3, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 54 → 46 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T19:10:30.278Z", "runId": "2026-10-25T19-10-16Z", "what": "Score: 50 → 54" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 81 → 50 (grade A → D) · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 76 → 81 (grade B → A) · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Evaluated version: commit 3ada52e → 2.11.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 89 → 76 (grade A → B) · rubric v1.0 → v2.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Evaluated version: — → commit 3ada52e" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/nwb/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://github.com/NeurodataWithoutBorders/nwb-schema", "neuroschema:evaluatedVersion": "https://github.com/NeurodataWithoutBorders/nwb-schema/releases/tag/2.11.0" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://www.nwb.org/", "prov:atTime": "2026-10-25T19:10:26.318Z" }, { "@id": "https://github.com/NeurodataWithoutBorders/nwb-schema", "prov:atTime": "2026-10-25T19:10:26.052Z" }, { "@id": "https://github.com/NeurodataWithoutBorders/nwb-schema.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:25.784Z" }, { "@id": "https://api.github.com/repos/NeurodataWithoutBorders/nwb-schema", "prov:atTime": "2026-10-25T19:10:26.111Z" }, { "@id": "https://api.crossref.org/works/10.7554%2FeLife.78362", "prov:atTime": "2026-10-25T19:10:25.731Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:26.623Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#nwb" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#nwb" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#nwb" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#nwb" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#nwb" } ] } }, { "id": "odml", "acronym": "odML", "name": "odML Terminologies", "category": "physiology", "kind": "vocabulary", "description": "Terminologies for the odML metadata format, giving standard keys for describing electrophysiology experiments, subjects and hardware.", "formats": [ "XML", "JSON", "YAML" ], "species": [ "Multi-species" ], "maintainer": "G-Node", "homepage": "https://g-node.github.io/python-odml/", "repository": "https://github.com/G-Node/odml-terminologies", "publications": [ { "title": "A Bottom-up Approach to Data Annotation in Neurophysiology", "doi": "10.3389/fninf.2011.00016", "year": 2011 } ], "usedBy": [ { "name": "NIX", "url": "https://github.com/G-Node/nix", "note": "Embedded metadata model" } ], "tags": [ "metadata", "electrophysiology" ], "url": "https://neuroschema.org/o/odml/", "evaluation": { "links": { "homepage": { "url": "https://g-node.github.io/python-odml/", "code": 200, "state": "ok", "lastModified": "2023-12-15T08:44:00.000Z", "checkedAt": "2026-10-25T19:10:25.925Z" }, "repository": { "url": "https://github.com/G-Node/odml-terminologies", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:26.103Z" }, "download": null }, "github": { "slug": "G-Node/odml-terminologies", "stars": 4, "forks": 7, "openIssues": 2, "pushedAt": "2019-11-15T11:22:50Z", "archived": false, "license": "BSD-3-Clause", "source": "https://api.github.com/repos/G-Node/odml-terminologies", "fetchedAt": "2026-10-25T19:10:26.237Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [ { "doi": "10.3389/fninf.2011.00016", "count": 46, "source": "https://api.crossref.org/works/10.3389%2Ffninf.2011.00016", "fetchedAt": "2026-10-25T19:10:25.785Z" } ], "git": { "commit": "ff4108be24443413438b786e5281c24d44a7f602", "ref": "master", "headTag": null, "latestTag": null, "tagCount": 0, "tagDates": [], "url": "https://github.com/G-Node/odml-terminologies/tree/ff4108be24443413438b786e5281c24d44a7f602", "source": "https://github.com/G-Node/odml-terminologies.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:25.829Z" }, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [], "lastYear": 0, "from": null }, "bioregistry": null, "artifact": null, "score": 5, "gross": 25, "earned": 20, "possible": 80, "qualityApplies": false, "penalty": { "score": -20, "reason": "6.9 years → 4 × max(0, 6.9 − 1) (capped)", "steps": [ { "label": "Time since last activity", "pts": -20, "detail": "6.9 years → 4 × max(0, 6.9 − 1) (capped)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 17, "breakdown": { "findable": { "score": 3, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 3, "max": 3, "detail": "doi:10.3389/fninf.2011.00016" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "repository HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 0, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 0, "max": 5, "detail": "none of: XML, JSON, YAML" }, { "label": "Semantic-web IRIs (I2)", "pts": 0, "max": 3, "detail": "no RDF/OWL/JSON-LD representation" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "Formal machine-readable format (I1): none of: XML, JSON, YAML", "Semantic-web IRIs (I2): no RDF/OWL/JSON-LD representation", "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 5, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "BSD-3-Clause" }, { "label": "Release provenance (R1.2)", "pts": 0, "max": 4, "detail": "no version in artefact, registry or release tags" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Release provenance (R1.2): no version in artefact, registry or release tags", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Not applicable", "pts": 0, "max": 0, "detail": "vocabulary without an OWL/OBO/RDF artefact; total scaled from 80 to 100" } ], "notes": [], "applicable": false }, "maintenance": { "score": 0, "max": 16, "steps": [ { "label": "Recency", "pts": 0, "max": 10, "detail": "2019-11-15 → 83.3 months (older / unknown)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases" } ], "notes": [ "Recency: 2019-11-15 → 83.3 months (older / unknown)", "Release cadence (12 months): 0 releases" ] }, "adoption": { "score": 3, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "1 project" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 1, "max": 5, "detail": "max(stars 4 → 0, citations 46 → 1)" } ], "notes": [ "Documented adopting projects: 1 project", "Reused by other ontologies: 0", "Community signal: max(stars 4 → 0, citations 46 → 1)" ] } }, "lastActivity": "2019-11-15T11:22:50Z", "adopterCount": 1, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": { "label": "commit ff4108b", "from": "master at evaluation time", "value": "ff4108be24443413438b786e5281c24d44a7f602", "all": [ { "label": "commit ff4108b", "from": "master at evaluation time", "value": "ff4108be24443413438b786e5281c24d44a7f602" } ] }, "evaluatedAt": "2026-10-25T19:10:26.520Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "NIX", "url": "https://github.com/G-Node/nix", "note": "Embedded metadata model", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 44, "grade": "D", "fair": null, "version": null, "terms": null, "stars": 4, "license": "BSD-3-Clause", "lastActivity": "2019-11-15T11:22:50Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 38, "grade": "D", "fair": 30, "version": "commit ff4108b", "terms": null, "stars": 4, "license": "BSD-3-Clause", "lastActivity": "2019-11-15T11:22:50Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 18, "grade": "D", "fair": 30, "version": "commit ff4108b", "terms": null, "stars": 4, "license": "BSD-3-Clause", "lastActivity": "2019-11-15T11:22:50Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 5, "grade": "D", "fair": 17, "version": "commit ff4108b", "terms": null, "stars": 4, "license": "BSD-3-Clause", "lastActivity": "2019-11-15T11:22:50Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 5, "grade": "E", "fair": 17, "version": "commit ff4108b", "terms": null, "stars": 4, "license": "BSD-3-Clause", "lastActivity": "2019-11-15T11:22:50Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 1, "grade": "E", "fair": 14, "version": "commit ff4108b", "terms": null, "stars": 4, "license": "BSD-3-Clause", "lastActivity": "2019-11-15T11:22:50Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 5 → 1 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 18 → 5 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 38 → 18 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 44 → 38 · rubric v1.0 → v2.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Evaluated version: — → commit ff4108b" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/odml/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://github.com/G-Node/odml-terminologies", "neuroschema:evaluatedVersion": "ff4108be24443413438b786e5281c24d44a7f602" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://g-node.github.io/python-odml/", "prov:atTime": "2026-10-25T19:10:25.925Z" }, { "@id": "https://github.com/G-Node/odml-terminologies", "prov:atTime": "2026-10-25T19:10:26.103Z" }, { "@id": "https://github.com/G-Node/odml-terminologies.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:25.829Z" }, { "@id": "https://api.github.com/repos/G-Node/odml-terminologies", "prov:atTime": "2026-10-25T19:10:26.237Z" }, { "@id": "https://api.crossref.org/works/10.3389%2Ffninf.2011.00016", "prov:atTime": "2026-10-25T19:10:25.785Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:26.520Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#odml" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#odml" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#odml" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#odml" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#odml" } ] } }, { "id": "neuroml", "acronym": "NeuroML", "name": "NeuroML", "category": "modeling", "kind": "schema", "description": "An XML-based language (with XSD schema) for describing detailed neuron, synapse and network models in a simulator-independent way.", "formats": [ "XSD", "XML", "LEMS" ], "species": [ "N/A" ], "maintainer": "NeuroML Editorial Board", "homepage": "https://neuroml.org/", "repository": "https://github.com/NeuroML/NeuroML2", "publications": [ { "title": "NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail", "doi": "10.1371/journal.pcbi.1000815", "year": 2010 } ], "usedBy": [ { "name": "Open Source Brain", "url": "https://www.opensourcebrain.org/", "note": "Model sharing platform" }, { "name": "NetPyNE", "url": "https://www.netpyne.org/", "note": "Import/export" } ], "tags": [ "models", "simulation", "networks" ], "url": "https://neuroschema.org/o/neuroml/", "evaluation": { "links": { "homepage": { "url": "https://neuroml.org/", "code": 200, "state": "ok", "lastModified": "2025-07-25T15:12:10.000Z", "checkedAt": "2026-10-25T19:10:26.325Z" }, "repository": { "url": "https://github.com/NeuroML/NeuroML2", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:26.321Z" }, "download": null }, "github": { "slug": "NeuroML/NeuroML2", "stars": 65, "forks": 26, "openIssues": 66, "pushedAt": "2026-09-02T20:44:39Z", "archived": false, "license": "LGPL-3.0", "latestRelease": { "tag": "NMLv2.3.1", "date": "2024-08-20T15:05:22Z", "url": "https://github.com/NeuroML/NeuroML2/releases/tag/NMLv2.3.1" }, "source": "https://api.github.com/repos/NeuroML/NeuroML2", "fetchedAt": "2026-10-25T19:10:26.362Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [ { "doi": "10.1371/journal.pcbi.1000815", "count": 295, "source": "https://api.crossref.org/works/10.1371%2Fjournal.pcbi.1000815", "fetchedAt": "2026-10-25T19:10:25.946Z" } ], "git": { "commit": "a5f5dadccd23606e683eaa0dd58dd2c3b2a7ed58", "ref": "master", "headTag": null, "latestTag": { "name": "NMLv2.3.1", "commit": "50aacc6f0b97cf4a70f6887d4beb6b3b67c32eb6", "url": "https://github.com/NeuroML/NeuroML2/releases/tag/NMLv2.3.1" }, "tagCount": 13, "tagDates": [], "url": "https://github.com/NeuroML/NeuroML2/tree/a5f5dadccd23606e683eaa0dd58dd2c3b2a7ed58", "source": "https://github.com/NeuroML/NeuroML2.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:25.968Z" }, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [ "2021-12-15", "2022-10-19", "2023-09-20", "2024-08-20" ], "lastYear": 0, "from": "GitHub releases" }, "bioregistry": null, "artifact": null, "score": 48, "gross": 48, "earned": 38, "possible": 80, "qualityApplies": false, "penalty": { "score": 0, "reason": "active (last activity 2026-09-02)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.1 years → 4 × max(0, 0.1 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "D", "fair": 24, "breakdown": { "findable": { "score": 3, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 3, "max": 3, "detail": "doi:10.1371/journal.pcbi.1000815" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "repository HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 5, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "XSD" }, { "label": "Semantic-web IRIs (I2)", "pts": 0, "max": 3, "detail": "no RDF/OWL/JSON-LD representation" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "Semantic-web IRIs (I2): no RDF/OWL/JSON-LD representation", "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 7, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "LGPL-3.0" }, { "label": "Release provenance (R1.2)", "pts": 2, "max": 4, "detail": "NMLv2.3.1 (latest GitHub release); not declared inside the artefact" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Release provenance (R1.2): NMLv2.3.1 (latest GitHub release); not declared inside the artefact", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Not applicable", "pts": 0, "max": 0, "detail": "schema without an OWL/OBO/RDF artefact; total scaled from 80 to 100" } ], "notes": [], "applicable": false }, "maintenance": { "score": 10, "max": 16, "steps": [ { "label": "Recency", "pts": 10, "max": 10, "detail": "2026-09-02 → 1.7 months (≤ 3 months)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases (GitHub releases)" } ], "notes": [ "Release cadence (12 months): 0 releases (GitHub releases)" ] }, "adoption": { "score": 4, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "2 projects" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 2, "max": 5, "detail": "max(stars 65 → 2, citations 295 → 2)" } ], "notes": [ "Documented adopting projects: 2 projects", "Reused by other ontologies: 0", "Community signal: max(stars 65 → 2, citations 295 → 2)" ] } }, "lastActivity": "2026-09-02T20:44:39Z", "adopterCount": 2, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": { "label": "NMLv2.3.1", "from": "latest GitHub release", "value": "https://github.com/NeuroML/NeuroML2/releases/tag/NMLv2.3.1", "all": [ { "label": "NMLv2.3.1", "from": "latest GitHub release", "value": "https://github.com/NeuroML/NeuroML2/releases/tag/NMLv2.3.1" }, { "label": "NMLv2.3.1 + commit a5f5dad", "from": "latest release tag; master evaluated at commit", "value": "a5f5dadccd23606e683eaa0dd58dd2c3b2a7ed58", "release": "NMLv2.3.1" }, { "label": "commit a5f5dad", "from": "master at evaluation time", "value": "a5f5dadccd23606e683eaa0dd58dd2c3b2a7ed58" } ] }, "evaluatedAt": "2026-10-25T19:10:26.653Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "Open Source Brain", "url": "https://www.opensourcebrain.org/", "note": "Model sharing platform", "source": "curated" }, { "name": "NetPyNE", "url": "https://www.netpyne.org/", "note": "Import/export", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 86, "grade": "A", "fair": null, "version": null, "terms": null, "stars": 65, "license": "LGPL-3.0", "lastActivity": "2026-09-02T20:44:39Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 73, "grade": "B", "fair": 40, "version": "commit a5f5dad", "terms": null, "stars": 65, "license": "LGPL-3.0", "lastActivity": "2026-09-02T20:44:39Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 78, "grade": "B", "fair": 45, "version": "NMLv2.3.1", "terms": null, "stars": 65, "license": "LGPL-3.0", "lastActivity": "2026-09-02T20:44:39Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 48, "grade": "D", "fair": 24, "version": "NMLv2.3.1 + commit a5f5dad", "terms": null, "stars": 65, "license": "LGPL-3.0", "lastActivity": "2026-09-02T20:44:39Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 48, "grade": "D", "fair": 24, "version": "NMLv2.3.1", "terms": null, "stars": 65, "license": "LGPL-3.0", "lastActivity": "2026-09-02T20:44:39Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 44, "grade": "D", "fair": 21, "version": "NMLv2.3.1 + commit a5f5dad", "terms": null, "stars": 65, "license": "LGPL-3.0", "lastActivity": "2026-09-02T20:44:39Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 48 → 44 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Evaluated version: NMLv2.3.1 → NMLv2.3.1 + commit a5f5dad" }, { "at": "2026-10-25T19:10:30.278Z", "runId": "2026-10-25T19-10-16Z", "what": "Evaluated version: NMLv2.3.1 + commit a5f5dad → NMLv2.3.1" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 78 → 48 (grade B → D) · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Evaluated version: NMLv2.3.1 → NMLv2.3.1 + commit a5f5dad" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 73 → 78 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Evaluated version: commit a5f5dad → NMLv2.3.1" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 86 → 73 (grade A → B) · rubric v1.0 → v2.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Evaluated version: — → commit a5f5dad" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/neuroml/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://github.com/NeuroML/NeuroML2", "neuroschema:evaluatedVersion": "https://github.com/NeuroML/NeuroML2/releases/tag/NMLv2.3.1" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://neuroml.org/", "prov:atTime": "2026-10-25T19:10:26.325Z" }, { "@id": "https://github.com/NeuroML/NeuroML2", "prov:atTime": "2026-10-25T19:10:26.321Z" }, { "@id": "https://github.com/NeuroML/NeuroML2.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:25.968Z" }, { "@id": "https://api.github.com/repos/NeuroML/NeuroML2", "prov:atTime": "2026-10-25T19:10:26.362Z" }, { "@id": "https://api.crossref.org/works/10.1371%2Fjournal.pcbi.1000815", "prov:atTime": "2026-10-25T19:10:25.946Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:26.653Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#neuroml" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#neuroml" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#neuroml" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#neuroml" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#neuroml" } ] } }, { "id": "cno", "acronym": "CNO", "name": "Computational Neuroscience Ontology", "category": "modeling", "kind": "ontology", "description": "A controlled vocabulary of terms used to describe and annotate computational neuroscience models. A legacy resource.", "formats": [ "OWL" ], "species": [ "N/A" ], "maintainer": "INCF", "homepage": "https://bioportal.bioontology.org/ontologies/CNO", "bioportal": "CNO", "status": "legacy", "publications": [], "usedBy": [], "tags": [ "models", "annotation" ], "url": "https://neuroschema.org/o/cno/", "evaluation": { "links": { "homepage": { "url": "https://bioportal.bioontology.org/ontologies/CNO", "code": 403, "state": "blocked", "checkedAt": "2026-10-25T19:10:25.903Z" }, "repository": null, "download": null }, "github": null, "ols": null, "obo": null, "bioportal": null, "citations": [], "git": null, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [], "lastYear": 0, "from": null }, "bioregistry": null, "artifact": null, "score": 0, "gross": 12, "earned": 12, "possible": 100, "qualityApplies": true, "penalty": { "score": -15, "reason": "no commits, releases or dated files found; marked legacy", "steps": [ { "label": "No activity evidence", "pts": -5, "detail": "no commits, releases or dated files found" }, { "label": "Inactive status", "pts": -10, "detail": "marked legacy" } ] }, "grade": "E", "fair": 12, "breakdown": { "findable": { "score": 1, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 1, "max": 5, "detail": "1: BioPortal" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): 1: BioPortal", "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 3, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 403" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 0, "max": 6, "detail": "no download or repository listed" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Artefact retrievable over HTTP(S) (A1): no download or repository listed", "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 0, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 0, "max": 4, "detail": "no version in artefact, registry or release tags" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): no version in artefact, registry or release tags", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 0, "max": 4, "detail": "no BFO/COB/DOLCE import found" }, { "label": "Standard relations (RO)", "pts": 0, "max": 2, "detail": "does not import the Relation Ontology" }, { "label": "Logical consistency", "pts": 0, "max": 6, "detail": "never checked by a reasoner" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "ROBOT report: warning density", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "Scaled 0/16 → 20", "pts": 0, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "Upper-ontology alignment: no BFO/COB/DOLCE import found", "Standard relations (RO): does not import the Relation Ontology", "Logical consistency: never checked by a reasoner", "ROBOT report: no errors: no ROBOT report available", "ROBOT report: warning density: no ROBOT report available", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 0, "max": 16, "steps": [ { "label": "Recency", "pts": 0, "max": 10, "detail": "no activity evidence" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases" } ], "notes": [ "Recency: no activity evidence", "Release cadence (12 months): 0 releases" ] }, "adoption": { "score": 0, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 0, "max": 7, "detail": "0 projects" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 0, "max": 5, "detail": "max(stars 0 → 0, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 0 projects", "Reused by other ontologies: 0", "Community signal: max(stars 0 → 0, citations 0 → 0)" ] } }, "lastActivity": null, "adopterCount": 0, "reuseCount": 0, "importCount": 0, "registries": [ "BioPortal" ], "evaluatedVersion": null, "evaluatedAt": "2026-10-25T19:10:25.903Z", "runId": "2026-10-25T19-10-16Z", "adopters": [] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 23, "grade": "D", "fair": null, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "blocked" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 25, "grade": "D", "fair": 25, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "blocked" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 10, "grade": "D", "fair": 25, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "blocked" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 0, "grade": "D", "fair": 12, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "blocked" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 0, "grade": "E", "fair": 12, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "blocked" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 0, "grade": "E", "fair": 12, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "blocked" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 10 → 0 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 25 → 10 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 23 → 25 · rubric v1.0 → v2.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/cno/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://bioportal.bioontology.org/ontologies/CNO", "neuroschema:evaluatedVersion": null }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://bioportal.bioontology.org/ontologies/CNO", "prov:atTime": "2026-10-25T19:10:25.903Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:25.903Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#cno" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#cno" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#cno" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#cno" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#cno" } ] } }, { "id": "openminds", "acronym": "openMINDS", "name": "openMINDS", "category": "metadata", "kind": "schema", "description": "A set of metadata models and controlled terms for neuroscience graph databases, covering datasets, subjects, methods, software, models and brain atlases (SANDS).", "formats": [ "JSON Schema", "JSON-LD" ], "species": [ "Multi-species" ], "maintainer": "Open Metadata Initiative / EBRAINS", "license": "MIT", "homepage": "https://openminds-documentation.readthedocs.io/", "repository": "https://github.com/openMetadataInitiative/openMINDS", "publications": [], "usedBy": [ { "name": "EBRAINS Knowledge Graph", "url": "https://search.kg.ebrains.eu/", "note": "Native metadata model" } ], "tags": [ "metadata", "knowledge graph", "atlases", "JSON-LD" ], "url": "https://neuroschema.org/o/openminds/", "evaluation": { "links": { "homepage": { "url": "https://openminds-documentation.readthedocs.io/", "code": 200, "state": "ok", "resolvedUrl": "https://openminds.docs.om-i.org/en/latest/", "lastModified": "2026-10-21T15:38:44.000Z", "checkedAt": "2026-10-25T19:10:27.457Z" }, "repository": { "url": "https://github.com/openMetadataInitiative/openMINDS", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:26.339Z" }, "download": null }, "github": { "slug": "openMetadataInitiative/openMINDS", "stars": 6, "forks": 5, "openIssues": 21, "pushedAt": "2026-10-21T15:09:43Z", "archived": false, "license": "MIT", "source": "https://api.github.com/repos/openMetadataInitiative/openMINDS", "fetchedAt": "2026-10-25T19:10:26.394Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [], "git": { "commit": "19412fad8f493ef33f240df4d4109ddb73966f5e", "ref": "main", "headTag": null, "latestTag": null, "tagCount": 0, "tagDates": [], "url": "https://github.com/openMetadataInitiative/openMINDS/tree/19412fad8f493ef33f240df4d4109ddb73966f5e", "source": "https://github.com/openMetadataInitiative/openMINDS.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:26.004Z" }, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [], "lastYear": 0, "from": null }, "bioregistry": null, "artifact": null, "score": 44, "gross": 44, "earned": 35, "possible": 80, "qualityApplies": false, "penalty": { "score": 0, "reason": "active (last activity 2026-10-21)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.0 years → 4 × max(0, 0.0 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "D", "fair": 22, "breakdown": { "findable": { "score": 0, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere", "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "repository HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "JSON Schema, JSON-LD" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "JSON-LD" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 5, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "MIT" }, { "label": "Release provenance (R1.2)", "pts": 0, "max": 4, "detail": "no version in artefact, registry or release tags" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Release provenance (R1.2): no version in artefact, registry or release tags", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Not applicable", "pts": 0, "max": 0, "detail": "schema without an OWL/OBO/RDF artefact; total scaled from 80 to 100" } ], "notes": [], "applicable": false }, "maintenance": { "score": 10, "max": 16, "steps": [ { "label": "Recency", "pts": 10, "max": 10, "detail": "2026-10-21 → 0.1 months (≤ 3 months)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases" } ], "notes": [ "Release cadence (12 months): 0 releases" ] }, "adoption": { "score": 3, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "1 project" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 1, "max": 5, "detail": "max(stars 6 → 1, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 1 project", "Reused by other ontologies: 0", "Community signal: max(stars 6 → 1, citations 0 → 0)" ] } }, "lastActivity": "2026-10-21T15:09:43Z", "adopterCount": 1, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": { "label": "commit 19412fa", "from": "main at evaluation time", "value": "19412fad8f493ef33f240df4d4109ddb73966f5e", "all": [ { "label": "commit 19412fa", "from": "main at evaluation time", "value": "19412fad8f493ef33f240df4d4109ddb73966f5e" } ] }, "evaluatedAt": "2026-10-25T19:10:27.696Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "EBRAINS Knowledge Graph", "url": "https://search.kg.ebrains.eu/", "note": "Native metadata model", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 76, "grade": "B", "fair": null, "version": null, "terms": null, "stars": 6, "license": "MIT", "lastActivity": "2026-10-21T15:09:43Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 65, "grade": "B", "fair": 40, "version": "commit 19412fa", "terms": null, "stars": 6, "license": "MIT", "lastActivity": "2026-10-21T15:09:43Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 65, "grade": "B", "fair": 40, "version": "commit 19412fa", "terms": null, "stars": 6, "license": "MIT", "lastActivity": "2026-10-21T15:09:43Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 44, "grade": "D", "fair": 22, "version": "commit 19412fa", "terms": null, "stars": 6, "license": "MIT", "lastActivity": "2026-10-21T15:09:43Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 44, "grade": "D", "fair": 22, "version": "commit 19412fa", "terms": null, "stars": 6, "license": "MIT", "lastActivity": "2026-10-21T15:09:43Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 40, "grade": "D", "fair": 19, "version": "commit 19412fa", "terms": null, "stars": 6, "license": "MIT", "lastActivity": "2026-10-21T15:09:43Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 44 → 40 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 65 → 44 (grade B → D) · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 76 → 65 · rubric v1.0 → v2.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Evaluated version: — → commit 19412fa" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/openminds/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://github.com/openMetadataInitiative/openMINDS", "neuroschema:evaluatedVersion": "19412fad8f493ef33f240df4d4109ddb73966f5e" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://openminds-documentation.readthedocs.io/", "prov:atTime": "2026-10-25T19:10:27.457Z" }, { "@id": "https://github.com/openMetadataInitiative/openMINDS", "prov:atTime": "2026-10-25T19:10:26.339Z" }, { "@id": "https://github.com/openMetadataInitiative/openMINDS.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:26.004Z" }, { "@id": "https://api.github.com/repos/openMetadataInitiative/openMINDS", "prov:atTime": "2026-10-25T19:10:26.394Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:27.696Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#openminds" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#openminds" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#openminds" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#openminds" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#openminds" } ] } }, { "id": "bican-models", "acronym": "BICAN models", "name": "BICAN Knowledge Graph Models", "category": "metadata", "kind": "schema", "description": "LinkML data models for the BRAIN Initiative Cell Atlas Network (BICAN) knowledgebase: taxonomies, assertions and evidence, library generation, anatomical structures, genome annotation, donors and a BICAN subset of Biolink. JSON Schema and Pydantic models are generated from the LinkML sources.", "formats": [ "LinkML", "JSON Schema", "Pydantic" ], "species": [ "Human", "Mouse", "Primate" ], "maintainer": "BICAN", "homepage": "https://brain-bican.github.io/models/", "repository": "https://github.com/brain-bican/models", "publications": [], "usedBy": [ { "name": "BICAN Knowledgebase", "url": "https://www.portal.brain-bican.org/teams/bican-knowledgebase", "note": "Knowledge graph built on these models" }, { "name": "BICAN", "url": "https://www.portal.brain-bican.org/", "note": "Knowledge graph data models" } ], "tags": [ "LinkML", "knowledge graph", "cell atlas", "BICAN" ], "modules": [ { "name": "BKE Taxonomy", "url": "https://github.com/brain-bican/models/blob/main/linkml-schema/bke_taxonomy.yaml", "note": "Types and relationships of the BKE taxonomy" }, { "name": "Cell Taxonomy", "url": "https://github.com/brain-bican/models/blob/main/linkml-schema/cell_taxonomy.yaml", "note": "Cell type taxonomy structure" }, { "name": "Assertion & Evidence", "url": "https://github.com/brain-bican/models/blob/main/linkml-schema/assertion_evidence.yaml", "note": "Assertions and the evidence supporting them" }, { "name": "Library Generation", "url": "https://github.com/brain-bican/models/blob/main/linkml-schema/library_generation.yaml", "note": "Samples and digital assets produced while generating sequencing libraries" }, { "name": "Anatomical Structure", "url": "https://github.com/brain-bican/models/blob/main/linkml-schema/anatomical_structure.yaml", "note": "Anatomical brain structures, parcellations and coordinate spaces" }, { "name": "Genome Annotation", "url": "https://github.com/brain-bican/models/blob/main/linkml-schema/genome_annotation.yaml", "note": "An organism's annotated genome" }, { "name": "Donor", "url": "https://github.com/brain-bican/models/blob/main/linkml-schema/donor.yaml", "note": "Donor and subject information" }, { "name": "BICAN Core", "url": "https://github.com/brain-bican/models/blob/main/linkml-schema/bican_core.yaml", "note": "Shared core classes and slots" }, { "name": "BICAN Biolink", "url": "https://github.com/brain-bican/models/blob/main/linkml-schema/bican_biolink.yaml", "note": "BICAN subset of classes from the Biolink model" }, { "name": "BICAN PROV", "url": "https://github.com/brain-bican/models/blob/main/linkml-schema/bican_prov.yaml", "note": "Provenance classes (W3C PROV)" }, { "name": "BICAN SKOS", "url": "https://github.com/brain-bican/models/blob/main/linkml-schema/bican_skos.yaml", "note": "SKOS concepts used by the models" } ], "tools": [ { "name": "bkbit", "url": "https://github.com/brain-bican/bkbit", "note": "Brain Knowledge Base Interaction Toolkit: Pydantic models, validation and JSON-LD conversion (pip install bkbit)" } ], "url": "https://neuroschema.org/o/bican-models/", "evaluation": { "links": { "homepage": { "url": "https://brain-bican.github.io/models/", "code": 200, "state": "ok", "lastModified": "2026-10-22T05:03:19.000Z", "checkedAt": "2026-10-25T19:10:26.377Z" }, "repository": { "url": "https://github.com/brain-bican/models", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:26.577Z" }, "download": null }, "github": { "slug": "brain-bican/models", "stars": 4, "forks": 7, "openIssues": 19, "pushedAt": "2026-10-22T05:02:59Z", "archived": false, "license": null, "latestRelease": { "tag": "0.2.0", "date": "2025-01-07T16:29:29Z", "url": "https://github.com/brain-bican/models/releases/tag/0.2.0" }, "source": "https://api.github.com/repos/brain-bican/models", "fetchedAt": "2026-10-25T19:10:26.552Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [], "git": { "commit": "f1b80c939ba0f9caf654bb453ce4fb61310776a5", "ref": "main", "headTag": null, "latestTag": { "name": "0.2.0", "commit": "87f4b322efd03e28f7b3df268ea7462c46c633ee", "url": "https://github.com/brain-bican/models/releases/tag/0.2.0" }, "tagCount": 2, "tagDates": [], "url": "https://github.com/brain-bican/models/tree/f1b80c939ba0f9caf654bb453ce4fb61310776a5", "source": "https://github.com/brain-bican/models.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:26.224Z" }, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [ "2024-06-04", "2025-01-07" ], "lastYear": 0, "from": "GitHub releases" }, "bioregistry": null, "artifact": null, "score": 35, "gross": 35, "earned": 28, "possible": 80, "qualityApplies": false, "penalty": { "score": 0, "reason": "active (last activity 2026-10-22)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.0 years → 4 × max(0, 0.0 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 16, "breakdown": { "findable": { "score": 0, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere", "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "repository HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 5, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "LinkML, JSON Schema" }, { "label": "Semantic-web IRIs (I2)", "pts": 0, "max": 3, "detail": "no RDF/OWL/JSON-LD representation" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "Semantic-web IRIs (I2): no RDF/OWL/JSON-LD representation", "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 2, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 2, "max": 4, "detail": "0.2.0 (latest GitHub release); not declared inside the artefact" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): 0.2.0 (latest GitHub release); not declared inside the artefact", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Not applicable", "pts": 0, "max": 0, "detail": "schema without an OWL/OBO/RDF artefact; total scaled from 80 to 100" } ], "notes": [], "applicable": false }, "maintenance": { "score": 10, "max": 16, "steps": [ { "label": "Recency", "pts": 10, "max": 10, "detail": "2026-10-22 → 0.1 months (≤ 3 months)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases (GitHub releases)" } ], "notes": [ "Release cadence (12 months): 0 releases (GitHub releases)" ] }, "adoption": { "score": 2, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "2 projects" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 0, "max": 5, "detail": "max(stars 4 → 0, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 2 projects", "Reused by other ontologies: 0", "Community signal: max(stars 4 → 0, citations 0 → 0)" ] } }, "lastActivity": "2026-10-22T05:02:59Z", "adopterCount": 2, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": { "label": "0.2.0", "from": "latest GitHub release", "value": "https://github.com/brain-bican/models/releases/tag/0.2.0", "all": [ { "label": "0.2.0", "from": "latest GitHub release", "value": "https://github.com/brain-bican/models/releases/tag/0.2.0" }, { "label": "0.2.0 + commit f1b80c9", "from": "latest release tag; main evaluated at commit", "value": "f1b80c939ba0f9caf654bb453ce4fb61310776a5", "release": "0.2.0" }, { "label": "commit f1b80c9", "from": "main at evaluation time", "value": "f1b80c939ba0f9caf654bb453ce4fb61310776a5" } ] }, "evaluatedAt": "2026-10-25T19:10:26.889Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "BICAN Knowledgebase", "url": "https://www.portal.brain-bican.org/teams/bican-knowledgebase", "note": "Knowledge graph built on these models", "source": "curated" }, { "name": "BICAN", "url": "https://www.portal.brain-bican.org/", "note": "Knowledge graph data models", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 61, "grade": "C", "fair": null, "version": null, "terms": null, "stars": 4, "license": null, "lastActivity": "2026-10-22T05:02:59Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 52, "grade": "C", "fair": 25, "version": "commit f1b80c9", "terms": null, "stars": 4, "license": null, "lastActivity": "2026-10-22T05:02:59Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 57, "grade": "C", "fair": 30, "version": "0.2.0", "terms": null, "stars": 4, "license": null, "lastActivity": "2026-10-22T05:02:59Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 35, "grade": "D", "fair": 16, "version": "0.2.0 + commit f1b80c9", "terms": null, "stars": 4, "license": null, "lastActivity": "2026-10-22T05:02:59Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 35, "grade": "E", "fair": 16, "version": "0.2.0", "terms": null, "stars": 4, "license": null, "lastActivity": "2026-10-22T05:02:59Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 31, "grade": "E", "fair": 13, "version": "0.2.0 + commit f1b80c9", "terms": null, "stars": 4, "license": null, "lastActivity": "2026-10-22T05:02:59Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 35 → 31 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Evaluated version: 0.2.0 → 0.2.0 + commit f1b80c9" }, { "at": "2026-10-25T19:10:30.278Z", "runId": "2026-10-25T19-10-16Z", "what": "Evaluated version: 0.2.0 + commit f1b80c9 → 0.2.0" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 57 → 35 (grade C → D) · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Evaluated version: 0.2.0 → 0.2.0 + commit f1b80c9" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 52 → 57 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Evaluated version: commit f1b80c9 → 0.2.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Documented adopters: 1 → 2" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 61 → 52 · rubric v1.0 → v2.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Evaluated version: — → commit f1b80c9" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/bican-models/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://github.com/brain-bican/models", "neuroschema:evaluatedVersion": "https://github.com/brain-bican/models/releases/tag/0.2.0" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://brain-bican.github.io/models/", "prov:atTime": "2026-10-25T19:10:26.377Z" }, { "@id": "https://github.com/brain-bican/models", "prov:atTime": "2026-10-25T19:10:26.577Z" }, { "@id": "https://github.com/brain-bican/models.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:26.224Z" }, { "@id": "https://api.github.com/repos/brain-bican/models", "prov:atTime": "2026-10-25T19:10:26.552Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:26.889Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#bican-models" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#bican-models" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#bican-models" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#bican-models" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#bican-models" } ] } }, { "id": "dandi-schema", "acronym": "DANDI schema", "name": "DANDI Archive Metadata Schema", "category": "metadata", "kind": "schema", "description": "The metadata models of the DANDI neurophysiology archive. Pydantic models in the dandischema library define Dandiset and asset metadata; versioned JSON Schemas plus a JSON-LD context are generated from them and published in the dandi/schema repository. The library also converts Dandiset metadata to DataCite for DOIs.", "formats": [ "JSON Schema", "JSON-LD", "Pydantic" ], "species": [ "Multi-species" ], "maintainer": "DANDI team", "homepage": "https://docs.dandiarchive.org/", "repository": "https://github.com/dandi/dandi-schema", "publications": [], "usedBy": [ { "name": "DANDI Archive", "url": "https://dandiarchive.org/", "note": "Dataset metadata" } ], "tags": [ "metadata", "archive", "neurophysiology", "NWB", "DataCite" ], "download": "https://github.com/dandi/schema/tree/master/releases", "modules": [ { "name": "Dandiset", "url": "https://github.com/dandi/schema/blob/master/releases/0.8.0/dandiset.json", "note": "Draft Dandiset metadata (JSON Schema, release 0.8.0)" }, { "name": "Published Dandiset", "url": "https://github.com/dandi/schema/blob/master/releases/0.8.0/published-dandiset.json", "note": "Metadata of a published, versioned Dandiset" }, { "name": "Asset", "url": "https://github.com/dandi/schema/blob/master/releases/0.8.0/asset.json", "note": "Per-file asset metadata" }, { "name": "Published Asset", "url": "https://github.com/dandi/schema/blob/master/releases/0.8.0/published-asset.json", "note": "Asset metadata within a published Dandiset" }, { "name": "JSON-LD context", "url": "https://github.com/dandi/schema/blob/master/releases/0.8.0/context.json", "note": "Maps fields to schema.org and other vocabularies" }, { "name": "Pydantic models", "url": "https://github.com/dandi/dandi-schema/blob/master/dandischema/models.py", "note": "Source of truth for all generated schemas" } ], "tools": [ { "name": "dandischema", "url": "https://pypi.org/project/dandischema/", "note": "Python library: validate, migrate and aggregate DANDI metadata" }, { "name": "dandi-cli", "url": "https://github.com/dandi/dandi-cli", "note": "Command-line client that validates uploads against the schema" } ], "url": "https://neuroschema.org/o/dandi-schema/", "evaluation": { "links": { "homepage": { "url": "https://docs.dandiarchive.org/", "code": 200, "state": "ok", "lastModified": "2026-09-24T23:16:46.000Z", "checkedAt": "2026-10-25T19:10:27.171Z" }, "repository": { "url": "https://github.com/dandi/dandi-schema", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:27.035Z" }, "download": { "url": "https://github.com/dandi/schema/tree/master/releases", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:26.922Z" } }, "github": { "slug": "dandi/dandi-schema", "stars": 7, "forks": 15, "openIssues": 100, "pushedAt": "2026-10-19T22:07:04Z", "archived": false, "license": "Apache-2.0", "latestRelease": { "tag": "0.14.0", "date": "2026-08-05T19:32:21Z", "url": "https://github.com/dandi/dandi-schema/releases/tag/0.14.0" }, "source": "https://api.github.com/repos/dandi/dandi-schema", "fetchedAt": "2026-10-25T19:10:26.981Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [], "git": { "commit": "3e8ddd7bc3169178dba467bc0bc319d1a4f274cc", "ref": "master", "headTag": null, "latestTag": { "name": "0.14.0", "commit": "510f16168f854859d981924f61ac4c44f1a1f0fd", "url": "https://github.com/dandi/dandi-schema/releases/tag/0.14.0" }, "tagCount": 69, "tagDates": [], "url": "https://github.com/dandi/dandi-schema/tree/3e8ddd7bc3169178dba467bc0bc319d1a4f274cc", "source": "https://github.com/dandi/dandi-schema.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:26.617Z" }, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [ "2022-01-11", "2022-01-15", "2022-01-31", "2022-03-07", "2022-03-17", "2022-04-06", "2022-04-28", "2023-03-06", "2023-03-16", "2023-04-17", "2023-06-16", "2024-01-22", "2024-01-30", "2024-02-12", "2024-03-18", "2024-07-10", "2024-08-12", "2024-09-05", "2025-01-07", "2025-05-15", "2025-11-20", "2025-11-26", "2026-08-03", "2026-08-05" ], "lastYear": 4, "from": "GitHub releases" }, "bioregistry": null, "artifact": null, "score": 53, "gross": 53, "earned": 42, "possible": 80, "qualityApplies": false, "penalty": { "score": 0, "reason": "active (last activity 2026-10-19)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.0 years → 4 × max(0, 0.0 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "D", "fair": 24, "breakdown": { "findable": { "score": 0, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere", "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "download HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "JSON Schema, JSON-LD" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "JSON-LD" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 7, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "Apache-2.0" }, { "label": "Release provenance (R1.2)", "pts": 2, "max": 4, "detail": "0.14.0 (latest GitHub release); not declared inside the artefact" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Release provenance (R1.2): 0.14.0 (latest GitHub release); not declared inside the artefact", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Not applicable", "pts": 0, "max": 0, "detail": "schema without an OWL/OBO/RDF artefact; total scaled from 80 to 100" } ], "notes": [], "applicable": false }, "maintenance": { "score": 15, "max": 16, "steps": [ { "label": "Recency", "pts": 10, "max": 10, "detail": "2026-10-19 → 0.2 months (≤ 3 months)" }, { "label": "Release cadence (12 months)", "pts": 5, "max": 6, "detail": "4 releases (GitHub releases)" } ], "notes": [ "Release cadence (12 months): 4 releases (GitHub releases)" ] }, "adoption": { "score": 3, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "1 project" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 1, "max": 5, "detail": "max(stars 7 → 1, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 1 project", "Reused by other ontologies: 0", "Community signal: max(stars 7 → 1, citations 0 → 0)" ] } }, "lastActivity": "2026-10-19T22:07:04Z", "adopterCount": 1, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": { "label": "0.14.0", "from": "latest GitHub release", "value": "https://github.com/dandi/dandi-schema/releases/tag/0.14.0", "all": [ { "label": "0.14.0", "from": "latest GitHub release", "value": "https://github.com/dandi/dandi-schema/releases/tag/0.14.0" }, { "label": "0.14.0 + commit 3e8ddd7", "from": "latest release tag; master evaluated at commit", "value": "3e8ddd7bc3169178dba467bc0bc319d1a4f274cc", "release": "0.14.0" }, { "label": "commit 3e8ddd7", "from": "master at evaluation time", "value": "3e8ddd7bc3169178dba467bc0bc319d1a4f274cc" } ] }, "evaluatedAt": "2026-10-25T19:10:27.555Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "DANDI Archive", "url": "https://dandiarchive.org/", "note": "Dataset metadata", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 76, "grade": "B", "fair": null, "version": null, "terms": null, "stars": 7, "license": "Apache-2.0", "lastActivity": "2026-10-19T22:07:04Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 65, "grade": "B", "fair": 40, "version": "commit 3e8ddd7", "terms": null, "stars": 7, "license": "Apache-2.0", "lastActivity": "2026-10-19T22:07:04Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 70, "grade": "B", "fair": 45, "version": "0.14.0", "terms": null, "stars": 7, "license": "Apache-2.0", "lastActivity": "2026-10-19T22:07:04Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 46, "grade": "D", "fair": 24, "version": "0.14.0 + commit 3e8ddd7", "terms": null, "stars": 7, "license": "Apache-2.0", "lastActivity": "2026-10-19T22:07:04Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 53, "grade": "D", "fair": 24, "version": "0.14.0", "terms": null, "stars": 7, "license": "Apache-2.0", "lastActivity": "2026-10-19T22:07:04Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 46, "grade": "D", "fair": 24, "version": "0.14.0 + commit 3e8ddd7", "terms": null, "stars": 7, "license": "Apache-2.0", "lastActivity": "2026-10-19T22:07:04Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 53 → 46 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Evaluated version: 0.14.0 → 0.14.0 + commit 3e8ddd7" }, { "at": "2026-10-25T19:10:30.278Z", "runId": "2026-10-25T19-10-16Z", "what": "Score: 46 → 53" }, { "at": "2026-10-25T19:10:30.278Z", "runId": "2026-10-25T19-10-16Z", "what": "Evaluated version: 0.14.0 + commit 3e8ddd7 → 0.14.0" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 70 → 46 (grade B → D) · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Evaluated version: 0.14.0 → 0.14.0 + commit 3e8ddd7" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 65 → 70 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Evaluated version: commit 3e8ddd7 → 0.14.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Download link: — → ok" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 76 → 65 · rubric v1.0 → v2.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Evaluated version: — → commit 3e8ddd7" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/dandi-schema/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://github.com/dandi/schema/tree/master/releases", "neuroschema:evaluatedVersion": "https://github.com/dandi/dandi-schema/releases/tag/0.14.0" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://docs.dandiarchive.org/", "prov:atTime": "2026-10-25T19:10:27.171Z" }, { "@id": "https://github.com/dandi/dandi-schema", "prov:atTime": "2026-10-25T19:10:27.035Z" }, { "@id": "https://github.com/dandi/schema/tree/master/releases", "prov:atTime": "2026-10-25T19:10:26.922Z" }, { "@id": "https://github.com/dandi/dandi-schema.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:26.617Z" }, { "@id": "https://api.github.com/repos/dandi/dandi-schema", "prov:atTime": "2026-10-25T19:10:26.981Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:27.555Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#dandi-schema" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#dandi-schema" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#dandi-schema" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#dandi-schema" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#dandi-schema" } ] } }, { "id": "reproschema", "acronym": "ReproSchema", "name": "ReproSchema", "category": "metadata", "kind": "schema", "description": "A JSON-LD schema for standardising assessments and questionnaires, with versioned items, scoring and provenance, plus a shared library of instruments.", "formats": [ "JSON-LD", "LinkML" ], "species": [ "Human" ], "maintainer": "ReproNim", "homepage": "https://www.repronim.org/reproschema/", "repository": "https://github.com/ReproNim/reproschema", "publications": [], "usedBy": [ { "name": "ReproNim", "url": "https://www.repronim.org/", "note": "Reproducible assessment collection" } ], "tags": [ "questionnaires", "assessments", "JSON-LD" ], "url": "https://neuroschema.org/o/reproschema/", "evaluation": { "links": { "homepage": { "url": "https://www.repronim.org/reproschema/", "code": 200, "state": "ok", "resolvedUrl": "https://repronim.org/reproschema/", "lastModified": "2025-07-27T04:09:48.000Z", "checkedAt": "2026-10-25T19:10:27.750Z" }, "repository": { "url": "https://github.com/ReproNim/reproschema", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:27.120Z" }, "download": null }, "github": { "slug": "ReproNim/reproschema", "stars": 18, "forks": 24, "openIssues": 25, "pushedAt": "2026-03-06T17:38:50Z", "archived": false, "license": null, "latestRelease": { "tag": "1.0.0", "date": "2024-06-21T15:22:23Z", "url": "https://github.com/ReproNim/reproschema/releases/tag/1.0.0" }, "source": "https://api.github.com/repos/ReproNim/reproschema", "fetchedAt": "2026-10-25T19:10:27.027Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [], "git": { "commit": "ac35394773e66e2aab8a3d26e4acce1fabb1ce63", "ref": "main", "headTag": null, "latestTag": { "name": "1.0.0", "commit": "513775be45a741c4767a1a0ac0133635c2efb0df", "url": "https://github.com/ReproNim/reproschema/releases/tag/1.0.0" }, "tagCount": 5, "tagDates": [], "url": "https://github.com/ReproNim/reproschema/tree/ac35394773e66e2aab8a3d26e4acce1fabb1ce63", "source": "https://github.com/ReproNim/reproschema.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:26.718Z" }, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [ "2020-07-26", "2020-10-03", "2021-03-18", "2021-03-21", "2024-06-21" ], "lastYear": 0, "from": "GitHub releases" }, "bioregistry": null, "artifact": null, "score": 34, "gross": 34, "earned": 27, "possible": 80, "qualityApplies": false, "penalty": { "score": 0, "reason": "active (last activity 2026-03-06)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.6 years → 4 × max(0, 0.6 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 19, "breakdown": { "findable": { "score": 0, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere", "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "repository HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "JSON-LD, LinkML" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "JSON-LD" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 2, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 2, "max": 4, "detail": "1.0.0 (latest GitHub release); not declared inside the artefact" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): 1.0.0 (latest GitHub release); not declared inside the artefact", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Not applicable", "pts": 0, "max": 0, "detail": "schema without an OWL/OBO/RDF artefact; total scaled from 80 to 100" } ], "notes": [], "applicable": false }, "maintenance": { "score": 5, "max": 16, "steps": [ { "label": "Recency", "pts": 5, "max": 10, "detail": "2026-03-06 → 7.7 months (≤ 1 year)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases (GitHub releases)" } ], "notes": [ "Recency: 2026-03-06 → 7.7 months (≤ 1 year)", "Release cadence (12 months): 0 releases (GitHub releases)" ] }, "adoption": { "score": 3, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "1 project" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 1, "max": 5, "detail": "max(stars 18 → 1, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 1 project", "Reused by other ontologies: 0", "Community signal: max(stars 18 → 1, citations 0 → 0)" ] } }, "lastActivity": "2026-03-06T17:38:50Z", "adopterCount": 1, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": { "label": "1.0.0", "from": "latest GitHub release", "value": "https://github.com/ReproNim/reproschema/releases/tag/1.0.0", "all": [ { "label": "1.0.0", "from": "latest GitHub release", "value": "https://github.com/ReproNim/reproschema/releases/tag/1.0.0" }, { "label": "1.0.0 + commit ac35394", "from": "latest release tag; main evaluated at commit", "value": "ac35394773e66e2aab8a3d26e4acce1fabb1ce63", "release": "1.0.0" }, { "label": "commit ac35394", "from": "main at evaluation time", "value": "ac35394773e66e2aab8a3d26e4acce1fabb1ce63" } ] }, "evaluatedAt": "2026-10-25T19:10:28.081Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "ReproNim", "url": "https://www.repronim.org/", "note": "Reproducible assessment collection", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 59, "grade": "C", "fair": null, "version": null, "terms": null, "stars": 18, "license": null, "lastActivity": "2026-03-06T17:38:50Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 54, "grade": "C", "fair": 30, "version": "commit ac35394", "terms": null, "stars": 18, "license": null, "lastActivity": "2026-03-06T17:38:50Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 59, "grade": "C", "fair": 35, "version": "1.0.0", "terms": null, "stars": 18, "license": null, "lastActivity": "2026-03-06T17:38:50Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 34, "grade": "D", "fair": 19, "version": "1.0.0 + commit ac35394", "terms": null, "stars": 18, "license": null, "lastActivity": "2026-03-06T17:38:50Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 34, "grade": "E", "fair": 19, "version": "1.0.0", "terms": null, "stars": 18, "license": null, "lastActivity": "2026-03-06T17:38:50Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 30, "grade": "E", "fair": 16, "version": "1.0.0 + commit ac35394", "terms": null, "stars": 18, "license": null, "lastActivity": "2026-03-06T17:38:50Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 34 → 30 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Evaluated version: 1.0.0 → 1.0.0 + commit ac35394" }, { "at": "2026-10-25T19:10:30.278Z", "runId": "2026-10-25T19-10-16Z", "what": "Evaluated version: 1.0.0 + commit ac35394 → 1.0.0" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 59 → 34 (grade C → D) · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Evaluated version: 1.0.0 → 1.0.0 + commit ac35394" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 54 → 59 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Evaluated version: commit ac35394 → 1.0.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 59 → 54 · rubric v1.0 → v2.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Evaluated version: — → commit ac35394" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/reproschema/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://github.com/ReproNim/reproschema", "neuroschema:evaluatedVersion": "https://github.com/ReproNim/reproschema/releases/tag/1.0.0" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://www.repronim.org/reproschema/", "prov:atTime": "2026-10-25T19:10:27.750Z" }, { "@id": "https://github.com/ReproNim/reproschema", "prov:atTime": "2026-10-25T19:10:27.120Z" }, { "@id": "https://github.com/ReproNim/reproschema.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:26.718Z" }, { "@id": "https://api.github.com/repos/ReproNim/reproschema", "prov:atTime": "2026-10-25T19:10:27.027Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:28.081Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#reproschema" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#reproschema" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#reproschema" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#reproschema" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#reproschema" } ] } }, { "id": "neuroshapes", "acronym": "Neuroshapes", "name": "Neuroshapes", "category": "metadata", "kind": "schema", "description": "Open SHACL schemas for neuroscience data and provenance, originally developed within INCF and used by Blue Brain Nexus.", "formats": [ "SHACL", "JSON-LD" ], "species": [ "Multi-species" ], "maintainer": "INCF / Blue Brain Project", "homepage": "https://github.com/INCF/neuroshapes", "repository": "https://github.com/INCF/neuroshapes", "publications": [], "usedBy": [ { "name": "Blue Brain Nexus", "url": "https://github.com/BlueBrain/nexus", "note": "Knowledge graph validation" } ], "tags": [ "SHACL", "knowledge graph", "provenance" ], "url": "https://neuroschema.org/o/neuroshapes/", "evaluation": { "links": { "homepage": { "url": "https://github.com/INCF/neuroshapes", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:27.025Z" }, "repository": { "url": "https://github.com/INCF/neuroshapes", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:27.025Z" }, "download": null }, "github": { "slug": "INCF/neuroshapes", "stars": 47, "forks": 42, "openIssues": 78, "pushedAt": "2024-03-22T09:49:57Z", "archived": false, "license": "CC-BY-4.0", "latestRelease": { "tag": "v0.3.15", "date": "2019-02-04T14:48:46Z", "url": "https://github.com/INCF/neuroshapes/releases/tag/v0.3.15" }, "source": "https://api.github.com/repos/INCF/neuroshapes", "fetchedAt": "2026-10-25T19:10:27.283Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [], "git": { "commit": "00b8657946eb7e8dbca3a420d6b46f4bb113f577", "ref": "master", "headTag": null, "latestTag": { "name": "v1.0.3", "commit": "d63186631348ba932a21c9320e499c69950c1938", "url": "https://github.com/INCF/neuroshapes/releases/tag/v1.0.3" }, "tagCount": 25, "tagDates": [], "url": "https://github.com/INCF/neuroshapes/tree/00b8657946eb7e8dbca3a420d6b46f4bb113f577", "source": "https://github.com/INCF/neuroshapes.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:26.805Z" }, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [ "2018-02-23", "2018-11-19", "2018-11-20", "2018-11-26", "2018-12-13", "2019-02-04" ], "lastYear": 0, "from": "GitHub releases" }, "bioregistry": null, "artifact": null, "score": 29, "gross": 35, "earned": 28, "possible": 80, "qualityApplies": false, "penalty": { "score": -6, "reason": "2.6 years → 4 × max(0, 2.6 − 1)", "steps": [ { "label": "Time since last activity", "pts": -6, "detail": "2.6 years → 4 × max(0, 2.6 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 24, "breakdown": { "findable": { "score": 0, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere", "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "repository HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "SHACL, JSON-LD" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "SHACL, JSON-LD" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 7, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "CC-BY-4.0" }, { "label": "Release provenance (R1.2)", "pts": 2, "max": 4, "detail": "v0.3.15 (latest GitHub release); not declared inside the artefact" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Release provenance (R1.2): v0.3.15 (latest GitHub release); not declared inside the artefact", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Not applicable", "pts": 0, "max": 0, "detail": "schema without an OWL/OBO/RDF artefact; total scaled from 80 to 100" } ], "notes": [], "applicable": false }, "maintenance": { "score": 0, "max": 16, "steps": [ { "label": "Recency", "pts": 0, "max": 10, "detail": "2024-03-22 → 31.1 months (older / unknown)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases (GitHub releases)" } ], "notes": [ "Recency: 2024-03-22 → 31.1 months (older / unknown)", "Release cadence (12 months): 0 releases (GitHub releases)" ] }, "adoption": { "score": 4, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "1 project" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 2, "max": 5, "detail": "max(stars 47 → 2, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 1 project", "Reused by other ontologies: 0", "Community signal: max(stars 47 → 2, citations 0 → 0)" ] } }, "lastActivity": "2024-03-22T09:49:57Z", "adopterCount": 1, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": { "label": "v0.3.15", "from": "latest GitHub release", "value": "https://github.com/INCF/neuroshapes/releases/tag/v0.3.15", "all": [ { "label": "v0.3.15", "from": "latest GitHub release", "value": "https://github.com/INCF/neuroshapes/releases/tag/v0.3.15" }, { "label": "v1.0.3 + commit 00b8657", "from": "latest release tag; master evaluated at commit", "value": "00b8657946eb7e8dbca3a420d6b46f4bb113f577", "release": "v1.0.3" }, { "label": "commit 00b8657", "from": "master at evaluation time", "value": "00b8657946eb7e8dbca3a420d6b46f4bb113f577" } ] }, "evaluatedAt": "2026-10-25T19:10:27.596Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "Blue Brain Nexus", "url": "https://github.com/BlueBrain/nexus", "note": "Knowledge graph validation", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 59, "grade": "C", "fair": null, "version": null, "terms": null, "stars": 47, "license": "CC-BY-4.0", "lastActivity": "2024-03-22T09:49:57Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 52, "grade": "C", "fair": 40, "version": "commit 00b8657", "terms": null, "stars": 47, "license": "CC-BY-4.0", "lastActivity": "2024-03-22T09:49:57Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 51, "grade": "C", "fair": 45, "version": "v0.3.15", "terms": null, "stars": 47, "license": "CC-BY-4.0", "lastActivity": "2024-03-22T09:49:57Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 29, "grade": "D", "fair": 24, "version": "v1.0.3 + commit 00b8657", "terms": null, "stars": 47, "license": "CC-BY-4.0", "lastActivity": "2024-03-22T09:49:57Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 29, "grade": "E", "fair": 24, "version": "v0.3.15", "terms": null, "stars": 47, "license": "CC-BY-4.0", "lastActivity": "2024-03-22T09:49:57Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 25, "grade": "E", "fair": 21, "version": "v1.0.3 + commit 00b8657", "terms": null, "stars": 47, "license": "CC-BY-4.0", "lastActivity": "2024-03-22T09:49:57Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 29 → 25 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Evaluated version: v0.3.15 → v1.0.3 + commit 00b8657" }, { "at": "2026-10-25T19:10:30.278Z", "runId": "2026-10-25T19-10-16Z", "what": "Evaluated version: v1.0.3 + commit 00b8657 → v0.3.15" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 51 → 29 (grade C → D) · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Evaluated version: v0.3.15 → v1.0.3 + commit 00b8657" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 52 → 51 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Evaluated version: commit 00b8657 → v0.3.15" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 59 → 52 · rubric v1.0 → v2.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Evaluated version: — → commit 00b8657" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/neuroshapes/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://github.com/INCF/neuroshapes", "neuroschema:evaluatedVersion": "https://github.com/INCF/neuroshapes/releases/tag/v0.3.15" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://github.com/INCF/neuroshapes", "prov:atTime": "2026-10-25T19:10:27.025Z" }, { "@id": "https://github.com/INCF/neuroshapes", "prov:atTime": "2026-10-25T19:10:27.025Z" }, { "@id": "https://github.com/INCF/neuroshapes.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:26.805Z" }, { "@id": "https://api.github.com/repos/INCF/neuroshapes", "prov:atTime": "2026-10-25T19:10:27.283Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:27.596Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#neuroshapes" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#neuroshapes" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#neuroshapes" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#neuroshapes" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#neuroshapes" } ] } }, { "id": "sparc-sds", "acronym": "SDS", "name": "SPARC Dataset Structure", "category": "metadata", "kind": "data-standard", "description": "File and metadata structure for datasets in the NIH SPARC programme on the peripheral nervous system, with curation tooling that maps to InterLex terms.", "formats": [ "Spreadsheet", "JSON" ], "species": [ "Multi-species" ], "maintainer": "SPARC Data and Resource Center", "homepage": "https://sparc.science/", "repository": "https://github.com/SciCrunch/sparc-curation", "publications": [], "usedBy": [ { "name": "SPARC Portal", "url": "https://sparc.science/", "note": "Required dataset structure" } ], "tags": [ "peripheral nervous system", "dataset structure" ], "url": "https://neuroschema.org/o/sparc-sds/", "evaluation": { "links": { "homepage": { "url": "https://sparc.science/", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:27.540Z" }, "repository": { "url": "https://github.com/SciCrunch/sparc-curation", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:27.397Z" }, "download": null }, "github": { "slug": "SciCrunch/sparc-curation", "stars": 18, "forks": 15, "openIssues": 59, "pushedAt": "2026-08-26T03:33:19Z", "archived": false, "license": "MIT", "latestRelease": { "tag": "0.0.1.dev5", "date": "2023-01-14T01:17:32Z", "url": "https://github.com/SciCrunch/sparc-curation/releases/tag/0.0.1.dev5" }, "source": "https://api.github.com/repos/SciCrunch/sparc-curation", "fetchedAt": "2026-10-25T19:10:27.300Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [], "git": { "commit": "54a4c7ed112bc60387e46bb61287d2092239b5c5", "ref": "master", "headTag": null, "latestTag": { "name": "dataset-template-3.0.2", "commit": "7fad4a4d8d6d41e132a76dcffa0c0d4041b58285", "url": "https://github.com/SciCrunch/sparc-curation/releases/tag/dataset-template-3.0.2" }, "tagCount": 16, "tagDates": [], "url": "https://github.com/SciCrunch/sparc-curation/tree/54a4c7ed112bc60387e46bb61287d2092239b5c5", "source": "https://github.com/SciCrunch/sparc-curation.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:26.992Z" }, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [ "2019-08-14", "2019-10-02", "2019-10-04", "2019-10-31", "2020-05-21", "2020-05-22", "2020-06-30", "2021-06-25", "2022-06-24", "2022-12-23", "2023-01-14", "2023-01-28" ], "lastYear": 0, "from": "GitHub releases" }, "bioregistry": null, "artifact": null, "score": 36, "gross": 36, "earned": 29, "possible": 80, "qualityApplies": false, "penalty": { "score": 0, "reason": "active (last activity 2026-08-26)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.2 years → 4 × max(0, 0.2 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 16, "breakdown": { "findable": { "score": 0, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere", "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "repository HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 0, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 0, "max": 5, "detail": "none of: Spreadsheet, JSON" }, { "label": "Semantic-web IRIs (I2)", "pts": 0, "max": 3, "detail": "no RDF/OWL/JSON-LD representation" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "Formal machine-readable format (I1): none of: Spreadsheet, JSON", "Semantic-web IRIs (I2): no RDF/OWL/JSON-LD representation", "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 7, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "MIT" }, { "label": "Release provenance (R1.2)", "pts": 2, "max": 4, "detail": "0.0.1.dev5 (latest GitHub release); not declared inside the artefact" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Release provenance (R1.2): 0.0.1.dev5 (latest GitHub release); not declared inside the artefact", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Not applicable", "pts": 0, "max": 0, "detail": "data-standard without an OWL/OBO/RDF artefact; total scaled from 80 to 100" } ], "notes": [], "applicable": false }, "maintenance": { "score": 10, "max": 16, "steps": [ { "label": "Recency", "pts": 10, "max": 10, "detail": "2026-08-26 → 2.0 months (≤ 3 months)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases (GitHub releases)" } ], "notes": [ "Release cadence (12 months): 0 releases (GitHub releases)" ] }, "adoption": { "score": 3, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "1 project" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 1, "max": 5, "detail": "max(stars 18 → 1, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 1 project", "Reused by other ontologies: 0", "Community signal: max(stars 18 → 1, citations 0 → 0)" ] } }, "lastActivity": "2026-08-26T03:33:19Z", "adopterCount": 1, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": { "label": "0.0.1.dev5", "from": "latest GitHub release", "value": "https://github.com/SciCrunch/sparc-curation/releases/tag/0.0.1.dev5", "all": [ { "label": "0.0.1.dev5", "from": "latest GitHub release", "value": "https://github.com/SciCrunch/sparc-curation/releases/tag/0.0.1.dev5" }, { "label": "dataset-template-3.0.2 + commit 54a4c7e", "from": "latest release tag; master evaluated at commit", "value": "54a4c7ed112bc60387e46bb61287d2092239b5c5", "release": "dataset-template-3.0.2" }, { "label": "commit 54a4c7e", "from": "master at evaluation time", "value": "54a4c7ed112bc60387e46bb61287d2092239b5c5" } ] }, "evaluatedAt": "2026-10-25T19:10:27.866Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "SPARC Portal", "url": "https://sparc.science/", "note": "Required dataset structure", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 69, "grade": "B", "fair": null, "version": null, "terms": null, "stars": 18, "license": "MIT", "lastActivity": "2026-08-26T03:33:19Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 53, "grade": "C", "fair": 25, "version": "commit 54a4c7e", "terms": null, "stars": 18, "license": "MIT", "lastActivity": "2026-08-26T03:33:19Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 58, "grade": "C", "fair": 30, "version": "0.0.1.dev5", "terms": null, "stars": 18, "license": "MIT", "lastActivity": "2026-08-26T03:33:19Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 36, "grade": "D", "fair": 16, "version": "dataset-template-3.0.2 + commit 54a4c7e", "terms": null, "stars": 18, "license": "MIT", "lastActivity": "2026-08-26T03:33:19Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 36, "grade": "E", "fair": 16, "version": "0.0.1.dev5", "terms": null, "stars": 18, "license": "MIT", "lastActivity": "2026-08-26T03:33:19Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 33, "grade": "E", "fair": 13, "version": "dataset-template-3.0.2 + commit 54a4c7e", "terms": null, "stars": 18, "license": "MIT", "lastActivity": "2026-08-26T03:33:19Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 36 → 33 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Evaluated version: 0.0.1.dev5 → dataset-template-3.0.2 + commit 54a4c7e" }, { "at": "2026-10-25T19:10:30.278Z", "runId": "2026-10-25T19-10-16Z", "what": "Evaluated version: dataset-template-3.0.2 + commit 54a4c7e → 0.0.1.dev5" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 58 → 36 (grade C → D) · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Evaluated version: 0.0.1.dev5 → dataset-template-3.0.2 + commit 54a4c7e" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 53 → 58 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Evaluated version: commit 54a4c7e → 0.0.1.dev5" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 69 → 53 (grade B → C) · rubric v1.0 → v2.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Evaluated version: — → commit 54a4c7e" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/sparc-sds/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://github.com/SciCrunch/sparc-curation", "neuroschema:evaluatedVersion": "https://github.com/SciCrunch/sparc-curation/releases/tag/0.0.1.dev5" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://sparc.science/", "prov:atTime": "2026-10-25T19:10:27.540Z" }, { "@id": "https://github.com/SciCrunch/sparc-curation", "prov:atTime": "2026-10-25T19:10:27.397Z" }, { "@id": "https://github.com/SciCrunch/sparc-curation.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:26.992Z" }, { "@id": "https://api.github.com/repos/SciCrunch/sparc-curation", "prov:atTime": "2026-10-25T19:10:27.300Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:27.866Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#sparc-sds" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#sparc-sds" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#sparc-sds" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#sparc-sds" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#sparc-sds" } ] } }, { "id": "nifstd", "acronym": "NIFSTD", "name": "NIF Standard Ontology", "category": "terminology", "kind": "ontology", "description": "The Neuroscience Information Framework ontology: a broad, modular set of neuroscience terms spanning anatomy, cells, molecules, techniques and resources.", "formats": [ "OWL", "Turtle" ], "species": [ "Multi-species" ], "maintainer": "SciCrunch / FDI Lab", "homepage": "https://github.com/SciCrunch/NIF-Ontology", "repository": "https://github.com/SciCrunch/NIF-Ontology", "bioportal": "NIFSTD", "publications": [ { "title": "The NIFSTD and BIRNLex Vocabularies: Building Comprehensive Ontologies for Neuroscience", "doi": "10.1007/s12021-008-9032-z", "year": 2008 } ], "usedBy": [ { "name": "Neuroscience Information Framework", "url": "https://neuinfo.org/", "note": "Search and resource annotation" }, { "name": "SPARC", "url": "https://sparc.science/", "note": "Via InterLex" } ], "tags": [ "neuroscience", "umbrella" ], "url": "https://neuroschema.org/o/nifstd/", "evaluation": { "links": { "homepage": { "url": "https://github.com/SciCrunch/NIF-Ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:27.066Z" }, "repository": { "url": "https://github.com/SciCrunch/NIF-Ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:27.066Z" }, "download": null }, "github": { "slug": "SciCrunch/NIF-Ontology", "stars": 64, "forks": 17, "openIssues": 153, "pushedAt": "2026-07-24T22:04:16Z", "archived": false, "license": "CC-BY-4.0", "latestRelease": { "tag": "v3.1", "date": "2018-01-15T14:40:35Z", "url": "https://github.com/SciCrunch/NIF-Ontology/releases/tag/v3.1" }, "source": "https://api.github.com/repos/SciCrunch/NIF-Ontology", "fetchedAt": "2026-10-25T19:10:21.784Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [ { "doi": "10.1007/s12021-008-9032-z", "count": 107, "source": "https://api.crossref.org/works/10.1007%2Fs12021-008-9032-z", "fetchedAt": "2026-10-25T19:10:27.088Z" } ], "git": { "commit": "e0b6941924a5dabcd62c5cab879e9b8c64571e4a", "ref": "master", "headTag": null, "latestTag": { "name": "20191210025914-4ca48f8", "commit": "4ca48f8d513c1622595c780e437cbef5fab3e061", "url": "https://github.com/SciCrunch/NIF-Ontology/releases/tag/20191210025914-4ca48f8" }, "tagCount": 44, "tagDates": [ "2023-01-17", "2023-01-23", "2023-04-12", "2023-04-29", "2023-05-05", "2023-07-28", "2023-07-31", "2023-08-04", "2024-01-30", "2024-03-05", "2024-03-26", "2024-08-02", "2024-08-27", "2024-08-28", "2024-08-29", "2024-09-21", "2025-05-02", "2025-09-14", "2026-01-10", "2026-01-16", "2026-01-30", "2026-02-11", "2026-06-23" ], "url": "https://github.com/SciCrunch/NIF-Ontology/tree/e0b6941924a5dabcd62c5cab879e9b8c64571e4a", "source": "https://github.com/SciCrunch/NIF-Ontology.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:21.311Z" }, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [ "2016-07-08", "2017-09-10", "2017-09-12", "2017-10-16", "2018-01-15" ], "lastYear": 0, "from": "GitHub releases" }, "bioregistry": null, "artifact": null, "score": 40, "gross": 40, "earned": 40, "possible": 100, "qualityApplies": true, "penalty": { "score": 0, "reason": "active (last activity 2026-07-24)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.3 years → 4 × max(0, 0.3 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "D", "fair": 28, "breakdown": { "findable": { "score": 4, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 1, "max": 5, "detail": "1: BioPortal" }, { "label": "Citable reference (F2)", "pts": 3, "max": 3, "detail": "doi:10.1007/s12021-008-9032-z" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): 1: BioPortal" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "repository HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL, Turtle" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL, Turtle" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 7, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "CC-BY-4.0" }, { "label": "Release provenance (R1.2)", "pts": 2, "max": 4, "detail": "v3.1 (latest GitHub release); not declared inside the artefact" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Release provenance (R1.2): v3.1 (latest GitHub release); not declared inside the artefact", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 0, "max": 4, "detail": "no BFO/COB/DOLCE import found" }, { "label": "Standard relations (RO)", "pts": 0, "max": 2, "detail": "does not import the Relation Ontology" }, { "label": "Logical consistency", "pts": 0, "max": 6, "detail": "never checked by a reasoner" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "ROBOT report: warning density", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "Scaled 0/16 → 20", "pts": 0, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "Upper-ontology alignment: no BFO/COB/DOLCE import found", "Standard relations (RO): does not import the Relation Ontology", "Logical consistency: never checked by a reasoner", "ROBOT report: no errors: no ROBOT report available", "ROBOT report: warning density: no ROBOT report available", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 8, "max": 16, "steps": [ { "label": "Recency", "pts": 8, "max": 10, "detail": "2026-07-24 → 3.1 months (≤ 6 months)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases (GitHub releases)" } ], "notes": [ "Recency: 2026-07-24 → 3.1 months (≤ 6 months)", "Release cadence (12 months): 0 releases (GitHub releases)" ] }, "adoption": { "score": 4, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "2 projects" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 2, "max": 5, "detail": "max(stars 64 → 2, citations 107 → 2)" } ], "notes": [ "Documented adopting projects: 2 projects", "Reused by other ontologies: 0", "Community signal: max(stars 64 → 2, citations 107 → 2)" ] } }, "lastActivity": "2026-07-24T22:04:16Z", "adopterCount": 2, "reuseCount": 0, "importCount": 0, "registries": [ "BioPortal" ], "evaluatedVersion": { "label": "v3.1", "from": "latest GitHub release", "value": "https://github.com/SciCrunch/NIF-Ontology/releases/tag/v3.1", "all": [ { "label": "v3.1", "from": "latest GitHub release", "value": "https://github.com/SciCrunch/NIF-Ontology/releases/tag/v3.1" }, { "label": "20191210025914-4ca48f8 + commit e0b6941", "from": "latest release tag; master evaluated at commit", "value": "e0b6941924a5dabcd62c5cab879e9b8c64571e4a", "release": "20191210025914-4ca48f8" }, { "label": "commit e0b6941", "from": "master at evaluation time", "value": "e0b6941924a5dabcd62c5cab879e9b8c64571e4a" } ] }, "evaluatedAt": "2026-10-25T19:10:27.089Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "Neuroscience Information Framework", "url": "https://neuinfo.org/", "note": "Search and resource annotation", "source": "curated" }, { "name": "SPARC", "url": "https://sparc.science/", "note": "Via InterLex", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 91, "grade": "A", "fair": null, "version": null, "terms": null, "stars": 64, "license": "CC-BY-4.0", "lastActivity": "2026-07-24T22:04:16Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 83, "grade": "A", "fair": 50, "version": "commit e0b6941", "terms": null, "stars": 64, "license": "CC-BY-4.0", "lastActivity": "2026-07-24T22:04:16Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 88, "grade": "A", "fair": 55, "version": "v3.1", "terms": null, "stars": 64, "license": "CC-BY-4.0", "lastActivity": "2026-07-24T22:04:16Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 45, "grade": "D", "fair": 28, "version": "20191210025914-4ca48f8 + commit e0b6941", "terms": null, "stars": 64, "license": "CC-BY-4.0", "lastActivity": "2026-07-24T22:04:16Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 40, "grade": "D", "fair": 28, "version": "v3.1", "terms": null, "stars": 64, "license": "CC-BY-4.0", "lastActivity": "2026-07-24T22:04:16Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 42, "grade": "D", "fair": 25, "version": "20191210025914-4ca48f8 + commit e0b6941", "terms": null, "stars": 64, "license": "CC-BY-4.0", "lastActivity": "2026-07-24T22:04:16Z", "adopters": 2, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 40 → 42 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Evaluated version: v3.1 → 20191210025914-4ca48f8 + commit e0b6941" }, { "at": "2026-10-25T19:10:30.278Z", "runId": "2026-10-25T19-10-16Z", "what": "Score: 45 → 40" }, { "at": "2026-10-25T19:10:30.278Z", "runId": "2026-10-25T19-10-16Z", "what": "Evaluated version: 20191210025914-4ca48f8 + commit e0b6941 → v3.1" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 88 → 45 (grade A → D) · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Evaluated version: v3.1 → 20191210025914-4ca48f8 + commit e0b6941" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 83 → 88 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Evaluated version: commit e0b6941 → v3.1" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 91 → 83 · rubric v1.0 → v2.0" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Evaluated version: — → commit e0b6941" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/nifstd/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://github.com/SciCrunch/NIF-Ontology", "neuroschema:evaluatedVersion": "https://github.com/SciCrunch/NIF-Ontology/releases/tag/v3.1" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://github.com/SciCrunch/NIF-Ontology", "prov:atTime": "2026-10-25T19:10:27.066Z" }, { "@id": "https://github.com/SciCrunch/NIF-Ontology", "prov:atTime": "2026-10-25T19:10:27.066Z" }, { "@id": "https://github.com/SciCrunch/NIF-Ontology.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:21.311Z" }, { "@id": "https://api.github.com/repos/SciCrunch/NIF-Ontology", "prov:atTime": "2026-10-25T19:10:21.784Z" }, { "@id": "https://api.crossref.org/works/10.1007%2Fs12021-008-9032-z", "prov:atTime": "2026-10-25T19:10:27.088Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:27.089Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#nifstd" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#nifstd" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#nifstd" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#nifstd" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#nifstd" } ] } }, { "id": "interlex", "acronym": "InterLex", "name": "InterLex", "category": "terminology", "kind": "vocabulary", "description": "A dynamic term registry (successor to NeuroLex) where neuroscience terms are minted, linked to existing ontologies and given stable ILX identifiers.", "formats": [ "Web", "REST API", "Turtle" ], "species": [ "Multi-species" ], "maintainer": "SciCrunch / FDI Lab", "homepage": "https://scicrunch.org/scicrunch/interlex/dashboard", "publications": [], "usedBy": [ { "name": "SPARC", "url": "https://sparc.science/", "note": "Dataset and anatomy terms" }, { "name": "RRID", "url": "https://www.rrids.org/", "note": "Resource identifiers" } ], "tags": [ "term registry", "identifiers" ], "url": "https://neuroschema.org/o/interlex/", "evaluation": { "links": { "homepage": { "url": "https://scicrunch.org/scicrunch/interlex/dashboard", "code": 403, "state": "blocked", "checkedAt": "2026-10-25T19:10:27.525Z" }, "repository": null, "download": null }, "github": null, "ols": null, "obo": null, "bioportal": null, "citations": [], "git": null, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [], "lastYear": 0, "from": null }, "bioregistry": null, "artifact": null, "score": 8, "gross": 13, "earned": 13, "possible": 100, "qualityApplies": true, "penalty": { "score": -5, "reason": "no commits, releases or dated files found", "steps": [ { "label": "No activity evidence", "pts": -5, "detail": "no commits, releases or dated files found" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 11, "breakdown": { "findable": { "score": 0, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere", "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 3, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 403" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 0, "max": 6, "detail": "no download or repository listed" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Artefact retrievable over HTTP(S) (A1): no download or repository listed", "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "Turtle" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "Turtle" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 0, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 0, "max": 4, "detail": "no version in artefact, registry or release tags" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): no version in artefact, registry or release tags", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 0, "max": 4, "detail": "no BFO/COB/DOLCE import found" }, { "label": "Standard relations (RO)", "pts": 0, "max": 2, "detail": "does not import the Relation Ontology" }, { "label": "Logical consistency", "pts": 0, "max": 6, "detail": "never checked by a reasoner" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "ROBOT report: warning density", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "Scaled 0/16 → 20", "pts": 0, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "Upper-ontology alignment: no BFO/COB/DOLCE import found", "Standard relations (RO): does not import the Relation Ontology", "Logical consistency: never checked by a reasoner", "ROBOT report: no errors: no ROBOT report available", "ROBOT report: warning density: no ROBOT report available", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 0, "max": 16, "steps": [ { "label": "Recency", "pts": 0, "max": 10, "detail": "no activity evidence" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases" } ], "notes": [ "Recency: no activity evidence", "Release cadence (12 months): 0 releases" ] }, "adoption": { "score": 2, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "2 projects" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 0, "max": 5, "detail": "max(stars 0 → 0, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 2 projects", "Reused by other ontologies: 0", "Community signal: max(stars 0 → 0, citations 0 → 0)" ] } }, "lastActivity": null, "adopterCount": 2, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": null, "evaluatedAt": "2026-10-25T19:10:27.525Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "SPARC", "url": "https://sparc.science/", "note": "Dataset and anatomy terms", "source": "curated" }, { "name": "RRID", "url": "https://www.rrids.org/", "note": "Resource identifiers", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 27, "grade": "D", "fair": null, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 2, "links": { "homepage": "blocked" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 27, "grade": "D", "fair": 20, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 2, "links": { "homepage": "blocked" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 22, "grade": "D", "fair": 20, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 2, "links": { "homepage": "blocked" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 8, "grade": "D", "fair": 11, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 2, "links": { "homepage": "blocked" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 8, "grade": "E", "fair": 11, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 2, "links": { "homepage": "blocked" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 8, "grade": "E", "fair": 11, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 2, "links": { "homepage": "blocked" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 22 → 8 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 27 → 22 · rubric v2.0 → v2.2" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/interlex/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://scicrunch.org/scicrunch/interlex/dashboard", "neuroschema:evaluatedVersion": null }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://scicrunch.org/scicrunch/interlex/dashboard", "prov:atTime": "2026-10-25T19:10:27.525Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:27.525Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#interlex" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#interlex" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#interlex" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#interlex" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#interlex" } ] } }, { "id": "bams", "acronym": "BAMS", "name": "Brain Architecture Management System", "category": "terminology", "kind": "knowledge-base", "description": "A knowledge management system for nervous system structure and connectivity data, with its own brain region nomenclatures. A legacy resource.", "formats": [ "Web", "RDF" ], "species": [ "Rat", "Mouse", "Human", "Macaque" ], "maintainer": "University of Southern California", "homepage": "https://bams1.org/", "status": "legacy", "publications": [], "usedBy": [], "tags": [ "connectivity", "brain regions" ], "url": "https://neuroschema.org/o/bams/", "evaluation": { "links": { "homepage": { "url": "https://bams1.org/", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:28.023Z" }, "repository": null, "download": null }, "github": null, "ols": null, "obo": null, "bioportal": null, "citations": [], "git": null, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [], "lastYear": 0, "from": null }, "bioregistry": null, "artifact": null, "score": 0, "gross": 14, "earned": 11, "possible": 80, "qualityApplies": false, "penalty": { "score": -15, "reason": "no commits, releases or dated files found; marked legacy", "steps": [ { "label": "No activity evidence", "pts": -5, "detail": "no commits, releases or dated files found" }, { "label": "Inactive status", "pts": -10, "detail": "marked legacy" } ] }, "grade": "E", "fair": 11, "breakdown": { "findable": { "score": 0, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere", "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 3, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 0, "max": 6, "detail": "no download or repository listed" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Artefact retrievable over HTTP(S) (A1): no download or repository listed", "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "RDF" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "RDF" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 0, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 0, "max": 4, "detail": "no version in artefact, registry or release tags" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): no version in artefact, registry or release tags", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Not applicable", "pts": 0, "max": 0, "detail": "knowledge-base without an OWL/OBO/RDF artefact; total scaled from 80 to 100" } ], "notes": [], "applicable": false }, "maintenance": { "score": 0, "max": 16, "steps": [ { "label": "Recency", "pts": 0, "max": 10, "detail": "no activity evidence" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases" } ], "notes": [ "Recency: no activity evidence", "Release cadence (12 months): 0 releases" ] }, "adoption": { "score": 0, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 0, "max": 7, "detail": "0 projects" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 0, "max": 5, "detail": "max(stars 0 → 0, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 0 projects", "Reused by other ontologies: 0", "Community signal: max(stars 0 → 0, citations 0 → 0)" ] } }, "lastActivity": null, "adopterCount": 0, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": null, "evaluatedAt": "2026-10-25T19:10:28.023Z", "runId": "2026-10-25T19-10-16Z", "adopters": [] }, "history": [ { "runId": "2026-10-25T17-55-09Z", "at": "2026-10-25T17:55:09.650Z", "score": 18, "grade": "D", "fair": null, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "ok" }, "archived": false, "rubric": "1.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json" }, { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 20, "grade": "D", "fair": 20, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 5, "grade": "D", "fair": 20, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 0, "grade": "D", "fair": 11, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 0, "grade": "E", "fair": 11, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 0, "grade": "E", "fair": 11, "version": null, "terms": null, "stars": null, "license": null, "lastActivity": null, "adopters": 0, "links": { "homepage": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 5 → 0 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 20 → 5 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:08:52.119Z", "runId": "2026-10-25T18-08-47Z", "what": "Score: 18 → 20 · rubric v1.0 → v2.0" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/bams/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://bams1.org/", "neuroschema:evaluatedVersion": null }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://bams1.org/", "prov:atTime": "2026-10-25T19:10:28.023Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:28.023Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T17-55-09Z.json#bams" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#bams" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#bams" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#bams" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#bams" } ] } }, { "id": "pbao", "acronym": "PBAO", "name": "Primate Brain Atlas Ontology", "category": "anatomy", "kind": "ontology", "description": "An application ontology of the Allen Institute Primate Brain Atlas structure graph, mapped to Uberon. Currently in draft status.", "formats": [ "OWL" ], "species": [ "Macaque" ], "maintainer": "BICAN", "homepage": "https://brain-bican.github.io/primate_brain_atlas_ontology/", "repository": "https://github.com/brain-bican/primate_brain_atlas_ontology", "download": "https://purl.brain-bican.org/ontology/pbao/pbao.owl", "publications": [], "usedBy": [], "tags": [ "brain regions", "primate", "Allen", "BICAN" ], "url": "https://neuroschema.org/o/pbao/", "evaluation": { "links": { "homepage": { "url": "https://brain-bican.github.io/primate_brain_atlas_ontology/", "code": 200, "state": "ok", "lastModified": "2024-04-30T09:04:15.000Z", "checkedAt": "2026-10-25T19:10:27.644Z" }, "repository": { "url": "https://github.com/brain-bican/primate_brain_atlas_ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:28.078Z" }, "download": { "url": "https://purl.brain-bican.org/ontology/pbao/pbao.owl", "code": 200, "state": "ok", "resolvedUrl": "https://github.com/brain-bican/purl.brain-bican.org/", "checkedAt": "2026-10-25T19:10:28.004Z" } }, "github": { "slug": "brain-bican/primate_brain_atlas_ontology", "stars": 0, "forks": 0, "openIssues": 0, "pushedAt": "2024-04-30T09:03:56Z", "archived": false, "license": null, "source": "https://api.github.com/repos/brain-bican/primate_brain_atlas_ontology", "fetchedAt": "2026-10-25T19:10:28.065Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [], "git": { "commit": "3ce25f0dd4d229851b4c734e7bfd65ffd82daa66", "ref": "main", "headTag": null, "latestTag": null, "tagCount": 0, "tagDates": [], "url": "https://github.com/brain-bican/primate_brain_atlas_ontology/tree/3ce25f0dd4d229851b4c734e7bfd65ffd82daa66", "source": "https://github.com/brain-bican/primate_brain_atlas_ontology.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:27.636Z" }, "tib": null, "dashboard": null, "quality": { "reasoner": "ELK", "robotVersion": "ROBOT version 1.9.7", "consistent": null, "reasonError": "INVALID ONTOLOGY FILE ERROR Could not load a valid ontology from file: pbao.owl\nFor details see: http://robot.obolibrary.org/errors#invalid-ontology-file-error\nUse the -vvv option to show the stack trace.\nUse the --help option to see usage information.\n", "checkedAt": "2026-10-25T19:09:20.384Z", "sha256": "c180886aab6822d494926624a380b9b79cdc3e99cf937b7bace0f9122221b6bc", "source": "data/quality/pbao.json" }, "oops": { "error": "fetch failed", "checkedAt": "2026-10-25T19:09:30.491Z", "source": "data/quality/pbao.json" }, "releases": { "dates": [], "lastYear": 0, "from": null }, "bioregistry": null, "artifact": { "source": "https://github.com/brain-bican/purl.brain-bican.org/", "etag": "W/\"0a6149fcf4a840cc913e613c206627ba\"", "contentType": "text/html", "fetchedAt": "2026-10-25T19:10:28.449Z" }, "score": 15, "gross": 21, "earned": 21, "possible": 100, "qualityApplies": true, "penalty": { "score": -6, "reason": "2.5 years → 4 × max(0, 2.5 − 1)", "steps": [ { "label": "Time since last activity", "pts": -6, "detail": "2.5 years → 4 × max(0, 2.5 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 21, "breakdown": { "findable": { "score": 4, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 4, "max": 4, "detail": "purl.brain-bican.org" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Indexed in services (F4): not indexed anywhere", "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "download HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 0, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 0, "max": 4, "detail": "no version in artefact, registry or release tags" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): no version in artefact, registry or release tags", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 0, "max": 4, "detail": "no BFO/COB/DOLCE import found" }, { "label": "Standard relations (RO)", "pts": 0, "max": 2, "detail": "does not import the Relation Ontology" }, { "label": "Logical consistency", "pts": 0, "max": 6, "detail": "never checked by a reasoner" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "ROBOT report: warning density", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "Scaled 0/16 → 20", "pts": 0, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "Upper-ontology alignment: no BFO/COB/DOLCE import found", "Standard relations (RO): does not import the Relation Ontology", "Logical consistency: never checked by a reasoner", "ROBOT report: no errors: no ROBOT report available", "ROBOT report: warning density: no ROBOT report available", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 0, "max": 16, "steps": [ { "label": "Recency", "pts": 0, "max": 10, "detail": "2024-04-30 → 29.8 months (older / unknown)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases" } ], "notes": [ "Recency: 2024-04-30 → 29.8 months (older / unknown)", "Release cadence (12 months): 0 releases" ] }, "adoption": { "score": 0, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 0, "max": 7, "detail": "0 projects" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 0, "max": 5, "detail": "max(stars 0 → 0, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 0 projects", "Reused by other ontologies: 0", "Community signal: max(stars 0 → 0, citations 0 → 0)" ] } }, "lastActivity": "2024-04-30T09:03:56Z", "adopterCount": 0, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": { "label": "commit 3ce25f0", "from": "main at evaluation time", "value": "3ce25f0dd4d229851b4c734e7bfd65ffd82daa66", "all": [ { "label": "commit 3ce25f0", "from": "main at evaluation time", "value": "3ce25f0dd4d229851b4c734e7bfd65ffd82daa66" } ] }, "evaluatedAt": "2026-10-25T19:10:28.684Z", "runId": "2026-10-25T19-10-16Z", "adopters": [] }, "history": [ { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 39, "grade": "D", "fair": 35, "version": "commit 3ce25f0", "terms": null, "stars": 0, "license": null, "lastActivity": "2024-04-30T09:03:56Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 33, "grade": "D", "fair": 35, "version": "commit 3ce25f0", "terms": null, "stars": 0, "license": null, "lastActivity": "2024-04-30T09:03:56Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 15, "grade": "D", "fair": 21, "version": "commit 3ce25f0", "terms": null, "stars": 0, "license": null, "lastActivity": "2024-04-30T09:03:56Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 15, "grade": "E", "fair": 21, "version": "commit 3ce25f0", "terms": null, "stars": 0, "license": null, "lastActivity": "2024-04-30T09:03:56Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 8, "grade": "E", "fair": 14, "version": "commit 3ce25f0", "terms": null, "stars": 0, "license": null, "lastActivity": "2024-04-30T09:03:56Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 15 → 8 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 33 → 15 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 39 → 33 · rubric v2.0 → v2.2" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/pbao/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://purl.brain-bican.org/ontology/pbao/pbao.owl", "neuroschema:evaluatedVersion": "3ce25f0dd4d229851b4c734e7bfd65ffd82daa66" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://brain-bican.github.io/primate_brain_atlas_ontology/", "prov:atTime": "2026-10-25T19:10:27.644Z" }, { "@id": "https://github.com/brain-bican/primate_brain_atlas_ontology", "prov:atTime": "2026-10-25T19:10:28.078Z" }, { "@id": "https://purl.brain-bican.org/ontology/pbao/pbao.owl", "prov:atTime": "2026-10-25T19:10:28.004Z" }, { "@id": "https://github.com/brain-bican/purl.brain-bican.org/", "prov:atTime": "2026-10-25T19:10:28.449Z" }, { "@id": "https://github.com/brain-bican/primate_brain_atlas_ontology.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:27.636Z" }, { "@id": "https://api.github.com/repos/brain-bican/primate_brain_atlas_ontology", "prov:atTime": "2026-10-25T19:10:28.065Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:28.684Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#pbao" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#pbao" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#pbao" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#pbao" } ] } }, { "id": "homba", "acronym": "HOMBA", "name": "Harmonized Ontology of Mammalian Brain Anatomy", "category": "anatomy", "kind": "ontology", "description": "A BICAN ontology that harmonizes brain anatomy terms across mammalian brain atlases. Built with the Ontology Development Kit; early-stage.", "formats": [ "OWL" ], "species": [ "Mammals" ], "maintainer": "BICAN / Cellular Semantics", "homepage": "https://github.com/brain-bican/harmonized_ontology_of_mammalian_brain_anatomy_ontology", "repository": "https://github.com/brain-bican/harmonized_ontology_of_mammalian_brain_anatomy_ontology", "download": "https://purl.brain-bican.org/ontology/homba.owl", "publications": [], "usedBy": [], "tags": [ "brain regions", "cross-species", "harmonization", "BICAN" ], "url": "https://neuroschema.org/o/homba/", "evaluation": { "links": { "homepage": { "url": "https://github.com/brain-bican/harmonized_ontology_of_mammalian_brain_anatomy_ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:28.154Z" }, "repository": { "url": "https://github.com/brain-bican/harmonized_ontology_of_mammalian_brain_anatomy_ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:28.154Z" }, "download": { "url": "https://purl.brain-bican.org/ontology/homba.owl", "code": 200, "state": "ok", "resolvedUrl": "https://github.com/brain-bican/purl.brain-bican.org/", "checkedAt": "2026-10-25T19:10:28.261Z" } }, "github": { "slug": "brain-bican/harmonized_ontology_of_mammalian_brain_anatomy_ontology", "stars": 0, "forks": 0, "openIssues": 0, "pushedAt": "2026-04-28T13:25:17Z", "archived": false, "license": null, "latestRelease": { "tag": "v2026-04-28", "date": "2026-04-28T13:25:17Z", "url": "https://github.com/brain-bican/harmonized_ontology_of_mammalian_brain_anatomy_ontology/releases/tag/v2026-04-28" }, "source": "https://api.github.com/repos/brain-bican/harmonized_ontology_of_mammalian_brain_anatomy_ontology", "fetchedAt": "2026-10-25T19:10:28.080Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [], "git": { "commit": "82829a0f30af6df608a0db21e9970397c8288326", "ref": "main", "headTag": "v2026-04-28", "latestTag": { "name": "v2026-04-28", "commit": "82829a0f30af6df608a0db21e9970397c8288326", "url": "https://github.com/brain-bican/harmonized_ontology_of_mammalian_brain_anatomy_ontology/releases/tag/v2026-04-28" }, "tagCount": 5, "tagDates": [ "2026-03-24", "2026-03-25", "2026-04-02", "2026-04-17", "2026-04-28" ], "url": "https://github.com/brain-bican/harmonized_ontology_of_mammalian_brain_anatomy_ontology/tree/82829a0f30af6df608a0db21e9970397c8288326", "source": "https://github.com/brain-bican/harmonized_ontology_of_mammalian_brain_anatomy_ontology.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:27.688Z" }, "tib": null, "dashboard": null, "quality": { "reasoner": "ELK", "robotVersion": "ROBOT version 1.9.7", "consistent": null, "reasonError": "INVALID ONTOLOGY FILE ERROR Could not load a valid ontology from file: homba.owl\nFor details see: http://robot.obolibrary.org/errors#invalid-ontology-file-error\nUse the -vvv option to show the stack trace.\nUse the --help option to see usage information.\n", "checkedAt": "2026-10-25T19:09:33.352Z", "sha256": "aeff368689a6e520c4a7611e22ea334c8d3bcc14c8782f31e7514348e2181123", "source": "data/quality/homba.json" }, "oops": { "error": "fetch failed", "checkedAt": "2026-10-25T19:09:43.485Z", "source": "data/quality/homba.json" }, "releases": { "dates": [ "2026-03-24", "2026-03-25", "2026-04-02", "2026-04-17", "2026-04-28" ], "lastYear": 5, "from": "GitHub releases" }, "bioregistry": null, "artifact": { "source": "https://github.com/brain-bican/purl.brain-bican.org/", "etag": "W/\"0a6149fcf4a840cc913e613c206627ba\"", "contentType": "text/html", "fetchedAt": "2026-10-25T19:10:28.652Z" }, "score": 36, "gross": 36, "earned": 36, "possible": 100, "qualityApplies": true, "penalty": { "score": 0, "reason": "active (last activity 2026-04-28)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.5 years → 4 × max(0, 0.5 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 23, "breakdown": { "findable": { "score": 4, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 4, "max": 4, "detail": "purl.brain-bican.org" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Indexed in services (F4): not indexed anywhere", "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "download HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 2, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 2, "max": 4, "detail": "v2026-04-28 (latest GitHub release); not declared inside the artefact" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): v2026-04-28 (latest GitHub release); not declared inside the artefact", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 0, "max": 4, "detail": "no BFO/COB/DOLCE import found" }, { "label": "Standard relations (RO)", "pts": 0, "max": 2, "detail": "does not import the Relation Ontology" }, { "label": "Logical consistency", "pts": 0, "max": 6, "detail": "never checked by a reasoner" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "ROBOT report: warning density", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "Scaled 0/16 → 20", "pts": 0, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "Upper-ontology alignment: no BFO/COB/DOLCE import found", "Standard relations (RO): does not import the Relation Ontology", "Logical consistency: never checked by a reasoner", "ROBOT report: no errors: no ROBOT report available", "ROBOT report: warning density: no ROBOT report available", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 13, "max": 16, "steps": [ { "label": "Recency", "pts": 8, "max": 10, "detail": "2026-04-28 → 5.9 months (≤ 6 months)" }, { "label": "Release cadence (12 months)", "pts": 5, "max": 6, "detail": "5 releases (GitHub releases)" } ], "notes": [ "Recency: 2026-04-28 → 5.9 months (≤ 6 months)", "Release cadence (12 months): 5 releases (GitHub releases)" ] }, "adoption": { "score": 0, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 0, "max": 7, "detail": "0 projects" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 0, "max": 5, "detail": "max(stars 0 → 0, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 0 projects", "Reused by other ontologies: 0", "Community signal: max(stars 0 → 0, citations 0 → 0)" ] } }, "lastActivity": "2026-04-28T13:25:17Z", "adopterCount": 0, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": { "label": "v2026-04-28", "from": "latest GitHub release", "value": "https://github.com/brain-bican/harmonized_ontology_of_mammalian_brain_anatomy_ontology/releases/tag/v2026-04-28", "all": [ { "label": "v2026-04-28", "from": "latest GitHub release", "value": "https://github.com/brain-bican/harmonized_ontology_of_mammalian_brain_anatomy_ontology/releases/tag/v2026-04-28" }, { "label": "v2026-04-28", "from": "git tag on the evaluated commit", "value": "82829a0f30af6df608a0db21e9970397c8288326" }, { "label": "v2026-04-28 + commit 82829a0", "from": "latest release tag; main evaluated at commit", "value": "82829a0f30af6df608a0db21e9970397c8288326", "release": "v2026-04-28" }, { "label": "commit 82829a0", "from": "main at evaluation time", "value": "82829a0f30af6df608a0db21e9970397c8288326" } ] }, "evaluatedAt": "2026-10-25T19:10:28.984Z", "runId": "2026-10-25T19-10-16Z", "adopters": [] }, "history": [ { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 55, "grade": "C", "fair": 35, "version": "commit 82829a0", "terms": null, "stars": 0, "license": null, "lastActivity": "2026-04-28T13:25:17Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 60, "grade": "C", "fair": 40, "version": "v2026-04-28", "terms": null, "stars": 0, "license": null, "lastActivity": "2026-04-28T13:25:17Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 36, "grade": "D", "fair": 23, "version": "v2026-04-28", "terms": null, "stars": 0, "license": null, "lastActivity": "2026-04-28T13:25:17Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 36, "grade": "E", "fair": 23, "version": "v2026-04-28", "terms": null, "stars": 0, "license": null, "lastActivity": "2026-04-28T13:25:17Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 29, "grade": "E", "fair": 16, "version": "v2026-04-28", "terms": null, "stars": 0, "license": null, "lastActivity": "2026-04-28T13:25:17Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 36 → 29 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 60 → 36 (grade C → D) · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 55 → 60 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Evaluated version: commit 82829a0 → v2026-04-28" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/homba/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://purl.brain-bican.org/ontology/homba.owl", "neuroschema:evaluatedVersion": "https://github.com/brain-bican/harmonized_ontology_of_mammalian_brain_anatomy_ontology/releases/tag/v2026-04-28" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://github.com/brain-bican/harmonized_ontology_of_mammalian_brain_anatomy_ontology", "prov:atTime": "2026-10-25T19:10:28.154Z" }, { "@id": "https://github.com/brain-bican/harmonized_ontology_of_mammalian_brain_anatomy_ontology", "prov:atTime": "2026-10-25T19:10:28.154Z" }, { "@id": "https://purl.brain-bican.org/ontology/homba.owl", "prov:atTime": "2026-10-25T19:10:28.261Z" }, { "@id": "https://github.com/brain-bican/purl.brain-bican.org/", "prov:atTime": "2026-10-25T19:10:28.652Z" }, { "@id": "https://github.com/brain-bican/harmonized_ontology_of_mammalian_brain_anatomy_ontology.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:27.688Z" }, { "@id": "https://api.github.com/repos/brain-bican/harmonized_ontology_of_mammalian_brain_anatomy_ontology", "prov:atTime": "2026-10-25T19:10:28.080Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:28.984Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#homba" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#homba" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#homba" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#homba" } ] } }, { "id": "scao", "acronym": "SCAO", "name": "Spinal Cord Atlas Ontology", "category": "anatomy", "kind": "ontology", "description": "An early-stage BICAN ontology repository for spinal cord atlas structures, set up with the Ontology Development Kit.", "formats": [ "OWL" ], "species": [ "Mammals" ], "maintainer": "BICAN", "homepage": "https://github.com/brain-bican/scao", "repository": "https://github.com/brain-bican/scao", "publications": [], "usedBy": [], "tags": [ "spinal cord", "BICAN" ], "url": "https://neuroschema.org/o/scao/", "evaluation": { "links": { "homepage": { "url": "https://github.com/brain-bican/scao", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:28.114Z" }, "repository": { "url": "https://github.com/brain-bican/scao", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:28.114Z" }, "download": null }, "github": { "slug": "brain-bican/scao", "stars": 0, "forks": 0, "openIssues": 0, "pushedAt": "2024-10-25T16:10:43Z", "archived": false, "license": "MIT", "source": "https://api.github.com/repos/brain-bican/scao", "fetchedAt": "2026-10-25T19:10:28.221Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [], "git": { "commit": "a5f68eef9b786825f5f4d153a27b6c30c45a40dd", "ref": "main", "headTag": null, "latestTag": null, "tagCount": 0, "tagDates": [], "url": "https://github.com/brain-bican/scao/tree/a5f68eef9b786825f5f4d153a27b6c30c45a40dd", "source": "https://github.com/brain-bican/scao.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:27.802Z" }, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [], "lastYear": 0, "from": null }, "bioregistry": null, "artifact": null, "score": 20, "gross": 24, "earned": 24, "possible": 100, "qualityApplies": true, "penalty": { "score": -4, "reason": "2.0 years → 4 × max(0, 2.0 − 1)", "steps": [ { "label": "Time since last activity", "pts": -4, "detail": "2.0 years → 4 × max(0, 2.0 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 22, "breakdown": { "findable": { "score": 0, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere", "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "repository HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 5, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "MIT" }, { "label": "Release provenance (R1.2)", "pts": 0, "max": 4, "detail": "no version in artefact, registry or release tags" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Release provenance (R1.2): no version in artefact, registry or release tags", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 0, "max": 4, "detail": "no BFO/COB/DOLCE import found" }, { "label": "Standard relations (RO)", "pts": 0, "max": 2, "detail": "does not import the Relation Ontology" }, { "label": "Logical consistency", "pts": 0, "max": 6, "detail": "never checked by a reasoner" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "ROBOT report: warning density", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "Scaled 0/16 → 20", "pts": 0, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "Upper-ontology alignment: no BFO/COB/DOLCE import found", "Standard relations (RO): does not import the Relation Ontology", "Logical consistency: never checked by a reasoner", "ROBOT report: no errors: no ROBOT report available", "ROBOT report: warning density: no ROBOT report available", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 2, "max": 16, "steps": [ { "label": "Recency", "pts": 2, "max": 10, "detail": "2024-10-25 → 24.0 months (≤ 2 years)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases" } ], "notes": [ "Recency: 2024-10-25 → 24.0 months (≤ 2 years)", "Release cadence (12 months): 0 releases" ] }, "adoption": { "score": 0, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 0, "max": 7, "detail": "0 projects" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 0, "max": 5, "detail": "max(stars 0 → 0, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 0 projects", "Reused by other ontologies: 0", "Community signal: max(stars 0 → 0, citations 0 → 0)" ] } }, "lastActivity": "2024-10-25T16:10:43Z", "adopterCount": 0, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": { "label": "commit a5f68ee", "from": "main at evaluation time", "value": "a5f68eef9b786825f5f4d153a27b6c30c45a40dd", "all": [ { "label": "commit a5f68ee", "from": "main at evaluation time", "value": "a5f68eef9b786825f5f4d153a27b6c30c45a40dd" } ] }, "evaluatedAt": "2026-10-25T19:10:28.446Z", "runId": "2026-10-25T19-10-16Z", "adopters": [] }, "history": [ { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 50, "grade": "C", "fair": 40, "version": "commit a5f68ee", "terms": null, "stars": 0, "license": "MIT", "lastActivity": "2024-10-25T16:10:43Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 46, "grade": "D", "fair": 40, "version": "commit a5f68ee", "terms": null, "stars": 0, "license": "MIT", "lastActivity": "2024-10-25T16:10:43Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 20, "grade": "D", "fair": 22, "version": "commit a5f68ee", "terms": null, "stars": 0, "license": "MIT", "lastActivity": "2024-10-25T16:10:43Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 20, "grade": "E", "fair": 22, "version": "commit a5f68ee", "terms": null, "stars": 0, "license": "MIT", "lastActivity": "2024-10-25T16:10:43Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 17, "grade": "E", "fair": 19, "version": "commit a5f68ee", "terms": null, "stars": 0, "license": "MIT", "lastActivity": "2024-10-25T16:10:43Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 20 → 17 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 46 → 20 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 50 → 46 (grade C → D) · rubric v2.0 → v2.2" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/scao/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://github.com/brain-bican/scao", "neuroschema:evaluatedVersion": "a5f68eef9b786825f5f4d153a27b6c30c45a40dd" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://github.com/brain-bican/scao", "prov:atTime": "2026-10-25T19:10:28.114Z" }, { "@id": "https://github.com/brain-bican/scao", "prov:atTime": "2026-10-25T19:10:28.114Z" }, { "@id": "https://github.com/brain-bican/scao.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:27.802Z" }, { "@id": "https://api.github.com/repos/brain-bican/scao", "prov:atTime": "2026-10-25T19:10:28.221Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:28.446Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#scao" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#scao" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#scao" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#scao" } ] } }, { "id": "bicano", "acronym": "BICANO", "name": "BICAN Application Ontology", "category": "metadata", "kind": "ontology", "description": "An application ontology covering research, research subjects and research results in BICAN, linking experimental knowledge to how data is distributed. It builds on earlier BICCN and Brain Data Standards work.", "formats": [ "OWL" ], "species": [ "Human", "Mouse", "Primate" ], "maintainer": "Allen Institute / University of Maryland", "license": "CC BY 4.0", "homepage": "https://github.com/brain-bican/bican_application_ontology", "repository": "https://github.com/brain-bican/bican_application_ontology", "download": "https://purl.brain-bican.org/ontology/bicano.owl", "publications": [], "usedBy": [ { "name": "BICAN", "url": "https://www.portal.brain-bican.org/", "note": "Application ontology for consortium data" } ], "tags": [ "application ontology", "BICAN" ], "url": "https://neuroschema.org/o/bicano/", "evaluation": { "links": { "homepage": { "url": "https://github.com/brain-bican/bican_application_ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:28.371Z" }, "repository": { "url": "https://github.com/brain-bican/bican_application_ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:28.371Z" }, "download": { "url": "https://purl.brain-bican.org/ontology/bicano.owl", "code": 200, "state": "ok", "resolvedUrl": "https://github.com/brain-bican/purl.brain-bican.org/", "checkedAt": "2026-10-25T19:10:28.265Z" } }, "github": { "slug": "brain-bican/bican_application_ontology", "stars": 0, "forks": 0, "openIssues": 2, "pushedAt": "2025-05-30T16:14:55Z", "archived": false, "license": null, "latestRelease": { "tag": "v2023-10-04", "date": "2023-10-05T02:34:10Z", "url": "https://github.com/brain-bican/bican_application_ontology/releases/tag/v2023-10-04" }, "source": "https://api.github.com/repos/brain-bican/bican_application_ontology", "fetchedAt": "2026-10-25T19:10:28.419Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [], "git": { "commit": "d175141b5a5125ada8422c224854e8cc79bbe956", "ref": "main", "headTag": null, "latestTag": { "name": "v2023-10-04", "commit": "58a63c0de7f7f72cdc33989c45a5ada8a179a521", "url": "https://github.com/brain-bican/bican_application_ontology/releases/tag/v2023-10-04" }, "tagCount": 1, "tagDates": [ "2023-10-04" ], "url": "https://github.com/brain-bican/bican_application_ontology/tree/d175141b5a5125ada8422c224854e8cc79bbe956", "source": "https://github.com/brain-bican/bican_application_ontology.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:27.969Z" }, "tib": null, "dashboard": null, "quality": { "reasoner": "ELK", "robotVersion": "ROBOT version 1.9.7", "consistent": null, "reasonError": "INVALID ONTOLOGY FILE ERROR Could not load a valid ontology from file: bicano.owl\nFor details see: http://robot.obolibrary.org/errors#invalid-ontology-file-error\nUse the -vvv option to show the stack trace.\nUse the --help option to see usage information.\n", "checkedAt": "2026-10-25T19:09:46.360Z", "sha256": "c52a926d38b3a21e8381723d3a98b1560ae30e8872d019d1a74ce1b77a3ec480", "source": "data/quality/bicano.json" }, "oops": { "error": "fetch failed", "checkedAt": "2026-10-25T19:09:56.474Z", "source": "data/quality/bicano.json" }, "releases": { "dates": [ "2023-10-05" ], "lastYear": 0, "from": "GitHub releases" }, "bioregistry": null, "artifact": { "source": "https://github.com/brain-bican/purl.brain-bican.org/", "etag": "W/\"250d95f0926c552452837cb36dca268f\"", "contentType": "text/html", "fetchedAt": "2026-10-25T19:10:28.365Z" }, "score": 30, "gross": 32, "earned": 32, "possible": 100, "qualityApplies": true, "penalty": { "score": -2, "reason": "1.4 years → 4 × max(0, 1.4 − 1)", "steps": [ { "label": "Time since last activity", "pts": -2, "detail": "1.4 years → 4 × max(0, 1.4 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 28, "breakdown": { "findable": { "score": 4, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 4, "max": 4, "detail": "purl.brain-bican.org" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Indexed in services (F4): not indexed anywhere", "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "download HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 7, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 5, "max": 5, "detail": "CC BY 4.0" }, { "label": "Release provenance (R1.2)", "pts": 2, "max": 4, "detail": "v2023-10-04 (latest GitHub release); not declared inside the artefact" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Release provenance (R1.2): v2023-10-04 (latest GitHub release); not declared inside the artefact", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 0, "max": 4, "detail": "no BFO/COB/DOLCE import found" }, { "label": "Standard relations (RO)", "pts": 0, "max": 2, "detail": "does not import the Relation Ontology" }, { "label": "Logical consistency", "pts": 0, "max": 6, "detail": "never checked by a reasoner" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "ROBOT report: warning density", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "Scaled 0/16 → 20", "pts": 0, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "Upper-ontology alignment: no BFO/COB/DOLCE import found", "Standard relations (RO): does not import the Relation Ontology", "Logical consistency: never checked by a reasoner", "ROBOT report: no errors: no ROBOT report available", "ROBOT report: warning density: no ROBOT report available", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 2, "max": 16, "steps": [ { "label": "Recency", "pts": 2, "max": 10, "detail": "2025-05-30 → 16.9 months (≤ 2 years)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases (GitHub releases)" } ], "notes": [ "Recency: 2025-05-30 → 16.9 months (≤ 2 years)", "Release cadence (12 months): 0 releases (GitHub releases)" ] }, "adoption": { "score": 2, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "1 project" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 0, "max": 5, "detail": "max(stars 0 → 0, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 1 project", "Reused by other ontologies: 0", "Community signal: max(stars 0 → 0, citations 0 → 0)" ] } }, "lastActivity": "2025-05-30T16:14:55Z", "adopterCount": 1, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": { "label": "v2023-10-04", "from": "latest GitHub release", "value": "https://github.com/brain-bican/bican_application_ontology/releases/tag/v2023-10-04", "all": [ { "label": "v2023-10-04", "from": "latest GitHub release", "value": "https://github.com/brain-bican/bican_application_ontology/releases/tag/v2023-10-04" }, { "label": "v2023-10-04 + commit d175141", "from": "latest release tag; main evaluated at commit", "value": "d175141b5a5125ada8422c224854e8cc79bbe956", "release": "v2023-10-04" }, { "label": "commit d175141", "from": "main at evaluation time", "value": "d175141b5a5125ada8422c224854e8cc79bbe956" } ] }, "evaluatedAt": "2026-10-25T19:10:28.762Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "BICAN", "url": "https://www.portal.brain-bican.org/", "note": "Application ontology for consortium data", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 60, "grade": "C", "fair": 45, "version": "commit d175141", "terms": null, "stars": 0, "license": null, "lastActivity": "2025-05-30T16:14:55Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 63, "grade": "C", "fair": 50, "version": "v2023-10-04", "terms": null, "stars": 0, "license": null, "lastActivity": "2025-05-30T16:14:55Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 30, "grade": "D", "fair": 28, "version": "v2023-10-04 + commit d175141", "terms": null, "stars": 0, "license": null, "lastActivity": "2025-05-30T16:14:55Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 30, "grade": "E", "fair": 28, "version": "v2023-10-04", "terms": null, "stars": 0, "license": null, "lastActivity": "2025-05-30T16:14:55Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 23, "grade": "E", "fair": 21, "version": "v2023-10-04 + commit d175141", "terms": null, "stars": 0, "license": null, "lastActivity": "2025-05-30T16:14:55Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 30 → 23 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Evaluated version: v2023-10-04 → v2023-10-04 + commit d175141" }, { "at": "2026-10-25T19:10:30.278Z", "runId": "2026-10-25T19-10-16Z", "what": "Evaluated version: v2023-10-04 + commit d175141 → v2023-10-04" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 63 → 30 (grade C → D) · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Evaluated version: v2023-10-04 → v2023-10-04 + commit d175141" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 60 → 63 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Evaluated version: commit d175141 → v2023-10-04" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/bicano/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://purl.brain-bican.org/ontology/bicano.owl", "neuroschema:evaluatedVersion": "https://github.com/brain-bican/bican_application_ontology/releases/tag/v2023-10-04" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://github.com/brain-bican/bican_application_ontology", "prov:atTime": "2026-10-25T19:10:28.371Z" }, { "@id": "https://github.com/brain-bican/bican_application_ontology", "prov:atTime": "2026-10-25T19:10:28.371Z" }, { "@id": "https://purl.brain-bican.org/ontology/bicano.owl", "prov:atTime": "2026-10-25T19:10:28.265Z" }, { "@id": "https://github.com/brain-bican/purl.brain-bican.org/", "prov:atTime": "2026-10-25T19:10:28.365Z" }, { "@id": "https://github.com/brain-bican/bican_application_ontology.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:27.969Z" }, { "@id": "https://api.github.com/repos/brain-bican/bican_application_ontology", "prov:atTime": "2026-10-25T19:10:28.419Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:28.762Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#bicano" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#bicano" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#bicano" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#bicano" } ] } }, { "id": "bito", "acronym": "BITO", "name": "BICAN Techniques Ontology", "category": "terminology", "kind": "ontology", "description": "An ontology of experimental techniques and methods used across the BRAIN Initiative Cell Atlas Network, to help scientists describe how data were produced.", "formats": [ "OWL" ], "species": [ "N/A" ], "maintainer": "BICAN", "homepage": "https://github.com/brain-bican/techniques_ontology", "repository": "https://github.com/brain-bican/techniques_ontology", "publications": [], "usedBy": [], "tags": [ "techniques", "methods", "BICAN" ], "url": "https://neuroschema.org/o/bito/", "evaluation": { "links": { "homepage": { "url": "https://github.com/brain-bican/techniques_ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:28.490Z" }, "repository": { "url": "https://github.com/brain-bican/techniques_ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:28.490Z" }, "download": null }, "github": { "slug": "brain-bican/techniques_ontology", "stars": 0, "forks": 0, "openIssues": 0, "pushedAt": "2024-06-04T17:03:00Z", "archived": false, "license": null, "source": "https://api.github.com/repos/brain-bican/techniques_ontology", "fetchedAt": "2026-10-25T19:10:28.647Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [], "git": { "commit": "0d1ec3cb19936b9238c563b111017252adc9a0d6", "ref": "main", "headTag": null, "latestTag": null, "tagCount": 0, "tagDates": [], "url": "https://github.com/brain-bican/techniques_ontology/tree/0d1ec3cb19936b9238c563b111017252adc9a0d6", "source": "https://github.com/brain-bican/techniques_ontology.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:28.119Z" }, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [], "lastYear": 0, "from": null }, "bioregistry": null, "artifact": null, "score": 11, "gross": 17, "earned": 17, "possible": 100, "qualityApplies": true, "penalty": { "score": -6, "reason": "2.4 years → 4 × max(0, 2.4 − 1)", "steps": [ { "label": "Time since last activity", "pts": -6, "detail": "2.4 years → 4 × max(0, 2.4 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 17, "breakdown": { "findable": { "score": 0, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere", "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "repository HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 8, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 0, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 0, "max": 4, "detail": "no version in artefact, registry or release tags" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): no version in artefact, registry or release tags", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 0, "max": 4, "detail": "no BFO/COB/DOLCE import found" }, { "label": "Standard relations (RO)", "pts": 0, "max": 2, "detail": "does not import the Relation Ontology" }, { "label": "Logical consistency", "pts": 0, "max": 6, "detail": "never checked by a reasoner" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "ROBOT report: warning density", "pts": 0, "max": 2, "detail": "no ROBOT report available" }, { "label": "Scaled 0/16 → 20", "pts": 0, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "Upper-ontology alignment: no BFO/COB/DOLCE import found", "Standard relations (RO): does not import the Relation Ontology", "Logical consistency: never checked by a reasoner", "ROBOT report: no errors: no ROBOT report available", "ROBOT report: warning density: no ROBOT report available", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 0, "max": 16, "steps": [ { "label": "Recency", "pts": 0, "max": 10, "detail": "2024-06-04 → 28.7 months (older / unknown)" }, { "label": "Release cadence (12 months)", "pts": 0, "max": 6, "detail": "0 releases" } ], "notes": [ "Recency: 2024-06-04 → 28.7 months (older / unknown)", "Release cadence (12 months): 0 releases" ] }, "adoption": { "score": 0, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 0, "max": 7, "detail": "0 projects" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 0, "max": 5, "detail": "max(stars 0 → 0, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 0 projects", "Reused by other ontologies: 0", "Community signal: max(stars 0 → 0, citations 0 → 0)" ] } }, "lastActivity": "2024-06-04T17:03:00Z", "adopterCount": 0, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": { "label": "commit 0d1ec3c", "from": "main at evaluation time", "value": "0d1ec3cb19936b9238c563b111017252adc9a0d6", "all": [ { "label": "commit 0d1ec3c", "from": "main at evaluation time", "value": "0d1ec3cb19936b9238c563b111017252adc9a0d6" } ] }, "evaluatedAt": "2026-10-25T19:10:28.900Z", "runId": "2026-10-25T19-10-16Z", "adopters": [] }, "history": [ { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 34, "grade": "D", "fair": 30, "version": "commit 0d1ec3c", "terms": null, "stars": 0, "license": null, "lastActivity": "2024-06-04T17:03:00Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 28, "grade": "D", "fair": 30, "version": "commit 0d1ec3c", "terms": null, "stars": 0, "license": null, "lastActivity": "2024-06-04T17:03:00Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 11, "grade": "D", "fair": 17, "version": "commit 0d1ec3c", "terms": null, "stars": 0, "license": null, "lastActivity": "2024-06-04T17:03:00Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 11, "grade": "E", "fair": 17, "version": "commit 0d1ec3c", "terms": null, "stars": 0, "license": null, "lastActivity": "2024-06-04T17:03:00Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 8, "grade": "E", "fair": 14, "version": "commit 0d1ec3c", "terms": null, "stars": 0, "license": null, "lastActivity": "2024-06-04T17:03:00Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 11 → 8 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 28 → 11 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 34 → 28 · rubric v2.0 → v2.2" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/bito/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://github.com/brain-bican/techniques_ontology", "neuroschema:evaluatedVersion": "0d1ec3cb19936b9238c563b111017252adc9a0d6" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://github.com/brain-bican/techniques_ontology", "prov:atTime": "2026-10-25T19:10:28.490Z" }, { "@id": "https://github.com/brain-bican/techniques_ontology", "prov:atTime": "2026-10-25T19:10:28.490Z" }, { "@id": "https://github.com/brain-bican/techniques_ontology.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:28.119Z" }, { "@id": "https://api.github.com/repos/brain-bican/techniques_ontology", "prov:atTime": "2026-10-25T19:10:28.647Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:28.900Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#bito" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#bito" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#bito" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#bito" } ] } }, { "id": "bican-metadata-schemas", "acronym": "BICAN metadata", "name": "BICAN Metadata Schemas", "category": "metadata", "kind": "schema", "description": "Metadata schemas and curation documentation for BICAN data, each reviewed and standardized by the BICAN Metadata and Ontologies Integration Working Group (MOWG).", "formats": [ "Schema files" ], "species": [ "Human", "Mouse", "Primate" ], "maintainer": "BICAN MOWG", "homepage": "https://github.com/brain-bican/metadata-schemas", "repository": "https://github.com/brain-bican/metadata-schemas", "publications": [], "usedBy": [ { "name": "BICAN", "url": "https://www.portal.brain-bican.org/", "note": "Consortium metadata curation" } ], "tags": [ "metadata", "curation", "BICAN" ], "url": "https://neuroschema.org/o/bican-metadata-schemas/", "evaluation": { "links": { "homepage": { "url": "https://github.com/brain-bican/metadata-schemas", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:28.690Z" }, "repository": { "url": "https://github.com/brain-bican/metadata-schemas", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:28.690Z" }, "download": null }, "github": { "slug": "brain-bican/metadata-schemas", "stars": 5, "forks": 3, "openIssues": 12, "pushedAt": "2026-05-21T20:49:25Z", "archived": false, "license": null, "latestRelease": { "tag": "v2026.04.01", "date": "2026-04-02T00:16:56Z", "url": "https://github.com/brain-bican/metadata-schemas/releases/tag/v2026.04.01" }, "source": "https://api.github.com/repos/brain-bican/metadata-schemas", "fetchedAt": "2026-10-25T19:10:28.494Z" }, "ols": null, "obo": null, "bioportal": null, "citations": [], "git": { "commit": "e76223d48b92aa244cd9f594bc87c50ce8a83c1a", "ref": "main", "headTag": "v2026.04.01", "latestTag": { "name": "v2026.04.01", "commit": "e76223d48b92aa244cd9f594bc87c50ce8a83c1a", "url": "https://github.com/brain-bican/metadata-schemas/releases/tag/v2026.04.01" }, "tagCount": 2, "tagDates": [], "url": "https://github.com/brain-bican/metadata-schemas/tree/e76223d48b92aa244cd9f594bc87c50ce8a83c1a", "source": "https://github.com/brain-bican/metadata-schemas.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:28.173Z" }, "tib": null, "dashboard": null, "quality": null, "oops": null, "releases": { "dates": [ "2025-08-20", "2026-04-02" ], "lastYear": 1, "from": "GitHub releases" }, "bioregistry": null, "artifact": null, "score": 30, "gross": 30, "earned": 24, "possible": 80, "qualityApplies": false, "penalty": { "score": 0, "reason": "active (last activity 2026-05-21)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.4 years → 4 × max(0, 0.4 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "E", "fair": 11, "breakdown": { "findable": { "score": 0, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 0, "max": 5, "detail": "not indexed anywhere" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): not indexed anywhere", "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 9, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "repository HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 0, "max": 3, "detail": "not in Bioregistry or OBO Foundry" } ], "notes": [ "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry" ] }, "interoperable": { "score": 0, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 0, "max": 5, "detail": "none of: Schema files" }, { "label": "Semantic-web IRIs (I2)", "pts": 0, "max": 3, "detail": "no RDF/OWL/JSON-LD representation" }, { "label": "References other vocabularies (I3)", "pts": 0, "max": 4, "detail": "no imported vocabularies found" } ], "notes": [ "Formal machine-readable format (I1): none of: Schema files", "Semantic-web IRIs (I2): no RDF/OWL/JSON-LD representation", "References other vocabularies (I3): no imported vocabularies found" ] }, "reusable": { "score": 2, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 2, "max": 4, "detail": "v2026.04.01 (latest GitHub release); not declared inside the artefact" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Release provenance (R1.2): v2026.04.01 (latest GitHub release); not declared inside the artefact", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 0, "max": 20, "steps": [ { "label": "Not applicable", "pts": 0, "max": 0, "detail": "schema without an OWL/OBO/RDF artefact; total scaled from 80 to 100" } ], "notes": [], "applicable": false }, "maintenance": { "score": 10, "max": 16, "steps": [ { "label": "Recency", "pts": 8, "max": 10, "detail": "2026-05-21 → 5.2 months (≤ 6 months)" }, { "label": "Release cadence (12 months)", "pts": 2, "max": 6, "detail": "1 release (GitHub releases)" } ], "notes": [ "Recency: 2026-05-21 → 5.2 months (≤ 6 months)", "Release cadence (12 months): 1 release (GitHub releases)" ] }, "adoption": { "score": 3, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 2, "max": 7, "detail": "1 project" }, { "label": "Reused by other ontologies", "pts": 0, "max": 4, "detail": "0" }, { "label": "Community signal", "pts": 1, "max": 5, "detail": "max(stars 5 → 1, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 1 project", "Reused by other ontologies: 0", "Community signal: max(stars 5 → 1, citations 0 → 0)" ] } }, "lastActivity": "2026-05-21T20:49:25Z", "adopterCount": 1, "reuseCount": 0, "importCount": 0, "registries": [], "evaluatedVersion": { "label": "v2026.04.01", "from": "latest GitHub release", "value": "https://github.com/brain-bican/metadata-schemas/releases/tag/v2026.04.01", "all": [ { "label": "v2026.04.01", "from": "latest GitHub release", "value": "https://github.com/brain-bican/metadata-schemas/releases/tag/v2026.04.01" }, { "label": "v2026.04.01", "from": "git tag on the evaluated commit", "value": "e76223d48b92aa244cd9f594bc87c50ce8a83c1a" }, { "label": "v2026.04.01 + commit e76223d", "from": "latest release tag; main evaluated at commit", "value": "e76223d48b92aa244cd9f594bc87c50ce8a83c1a", "release": "v2026.04.01" }, { "label": "commit e76223d", "from": "main at evaluation time", "value": "e76223d48b92aa244cd9f594bc87c50ce8a83c1a" } ] }, "evaluatedAt": "2026-10-25T19:10:28.967Z", "runId": "2026-10-25T19-10-16Z", "adopters": [ { "name": "BICAN", "url": "https://www.portal.brain-bican.org/", "note": "Consortium metadata curation", "source": "curated" } ] }, "history": [ { "runId": "2026-10-25T18-08-47Z", "at": "2026-10-25T18:08:52.119Z", "score": 40, "grade": "D", "fair": 15, "version": "commit e76223d", "terms": null, "stars": 5, "license": null, "lastActivity": "2026-05-21T20:49:25Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json" }, { "runId": "2026-10-25T18-21-21Z", "at": "2026-10-25T18:21:29.938Z", "score": 45, "grade": "D", "fair": 20, "version": "v2026.04.01", "terms": null, "stars": 5, "license": null, "lastActivity": "2026-05-21T20:49:25Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "2.2", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json" }, { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 28, "grade": "D", "fair": 11, "version": "v2026.04.01", "terms": null, "stars": 5, "license": null, "lastActivity": "2026-05-21T20:49:25Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 30, "grade": "E", "fair": 11, "version": "v2026.04.01", "terms": null, "stars": 5, "license": null, "lastActivity": "2026-05-21T20:49:25Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 24, "grade": "E", "fair": 8, "version": "v2026.04.01", "terms": null, "stars": 5, "license": null, "lastActivity": "2026-05-21T20:49:25Z", "adopters": 1, "links": { "homepage": "ok", "repository": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 30 → 24 · rubric v3.0 → v3.3" }, { "at": "2026-10-25T19:10:30.278Z", "runId": "2026-10-25T19-10-16Z", "what": "Score: 28 → 30 (grade D → E)" }, { "at": "2026-10-25T18:49:29.686Z", "runId": "2026-10-25T18-49-23Z", "what": "Score: 45 → 28 · rubric v2.2 → v3.0" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Score: 40 → 45 · rubric v2.0 → v2.2" }, { "at": "2026-10-25T18:21:29.938Z", "runId": "2026-10-25T18-21-21Z", "what": "Evaluated version: commit e76223d → v2026.04.01" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/bican-metadata-schemas/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "https://github.com/brain-bican/metadata-schemas", "neuroschema:evaluatedVersion": "https://github.com/brain-bican/metadata-schemas/releases/tag/v2026.04.01" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://github.com/brain-bican/metadata-schemas", "prov:atTime": "2026-10-25T19:10:28.690Z" }, { "@id": "https://github.com/brain-bican/metadata-schemas", "prov:atTime": "2026-10-25T19:10:28.690Z" }, { "@id": "https://github.com/brain-bican/metadata-schemas.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:28.173Z" }, { "@id": "https://api.github.com/repos/brain-bican/metadata-schemas", "prov:atTime": "2026-10-25T19:10:28.494Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:28.967Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T18-08-47Z.json#bican-metadata-schemas" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-21-21Z.json#bican-metadata-schemas" }, { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#bican-metadata-schemas" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#bican-metadata-schemas" } ] } }, { "id": "addicto", "acronym": "AddictO", "name": "Addiction Ontology", "category": "behavior", "kind": "ontology", "description": "An ontology being developed to cover all aspects of addiction research. It imports from, and is reused by, the Behaviour Change Intervention Ontology (BCIO).", "formats": [ "OWL" ], "species": [ "Human" ], "maintainer": "AddictO consortium (UCL)", "homepage": "https://addictovocab.org", "repository": "https://github.com/addicto-org/addiction-ontology", "download": "http://addictovocab.org/addicto.owl", "ols": "addicto", "publications": [], "usedBy": [], "tags": [ "addiction", "behaviour", "psychiatry" ], "url": "https://neuroschema.org/o/addicto/", "evaluation": { "links": { "homepage": { "url": "https://addictovocab.org", "code": 200, "state": "ok", "resolvedUrl": "https://addictovocab.org/", "lastModified": "2026-10-15T15:02:03.000Z", "checkedAt": "2026-10-25T19:10:29.159Z" }, "repository": { "url": "https://github.com/addicto-org/addiction-ontology", "code": 200, "state": "ok", "checkedAt": "2026-10-25T19:10:29.081Z" }, "download": { "url": "http://addictovocab.org/addicto.owl", "code": 200, "state": "ok", "resolvedUrl": "https://raw.githubusercontent.com/addiction-ssa/addiction-ontology/master/addicto.owl", "checkedAt": "2026-10-25T19:10:29.821Z" } }, "github": { "slug": "addicto-org/addiction-ontology", "stars": 8, "forks": 6, "openIssues": 8, "pushedAt": "2026-10-08T14:05:35Z", "archived": false, "license": null, "latestRelease": { "tag": "v2026-10-08", "date": "2026-10-08T14:05:36Z", "url": "https://github.com/addicto-org/addiction-ontology/releases/tag/v2026-10-08" }, "source": "https://api.github.com/repos/addicto-org/addiction-ontology", "fetchedAt": "2026-10-25T19:10:29.125Z" }, "ols": { "portal": "OLS (EMBL-EBI)", "id": "addicto", "api": "v2", "title": "Addiction Ontology", "iri": "http://addictovocab.org/addicto.owl", "versionIri": "http://addictovocab.org/addicto.owl/2026-10-08", "version": "2026-10-08", "releaseDate": "2026-10-08", "terms": 1376, "properties": 113, "individuals": 0, "importsFrom": [ "bcio", "bfo", "chebi", "chmo", "cob", "dc", "dcterms", "doid", "envo", "gaz", "gmho", "iao", "mf", "mfoem", "obcs", "obi", "ogms", "oio", "omo", "omrse", "pato", "po", "ro", "schemaorg_https", "sepio", "skos", "uberon" ], "exportsTo": [ "bcio", "gmho" ], "languages": [ "de", "en", "es", "fr", "la" ], "loaded": "2026-10-25T00:14:15.264018963", "sourceFileTimestamp": "Sun Oct 25 00:14:13 UTC 2026", "obsolete": false, "status": "LOADED", "page": "https://www.ebi.ac.uk/ols4/ontologies/addicto", "source": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/addicto", "fetchedAt": "2026-10-25T19:10:28.769Z" }, "obo": null, "bioportal": null, "citations": [], "git": { "commit": "c43fc3cb78964c334605e50d8356d0ecebcd7305", "ref": "master", "headTag": null, "latestTag": { "name": "v2026-10-08", "commit": "8f87ea0dbba0081fea6d90bb396c116260db08f9", "url": "https://github.com/addicto-org/addiction-ontology/releases/tag/v2026-10-08" }, "tagCount": 8, "tagDates": [ "2025-08-07", "2025-09-08", "2025-09-24", "2026-05-05", "2026-06-16", "2026-10-08" ], "url": "https://github.com/addicto-org/addiction-ontology/tree/c43fc3cb78964c334605e50d8356d0ecebcd7305", "source": "https://github.com/addicto-org/addiction-ontology.git/info/refs?service=git-upload-pack", "fetchedAt": "2026-10-25T19:10:28.847Z" }, "tib": null, "dashboard": null, "quality": { "reasoner": "ELK", "robotVersion": "ROBOT version 1.9.7", "consistent": true, "unsatisfiable": 0, "robot": { "ERROR": 488, "WARN": 279, "INFO": 61 }, "checkedAt": "2026-10-25T19:10:06.179Z", "sha256": "82db8f14c9ddbd265e76756f51d65718a1c58cf2b25da183a98fd9a9732487f7", "source": "data/quality/addicto.json" }, "oops": { "error": "fetch failed", "checkedAt": "2026-10-25T19:10:16.458Z", "source": "data/quality/addicto.json" }, "releases": { "dates": [ "2025-08-07", "2025-09-08", "2025-09-24", "2026-05-05", "2026-06-16", "2026-10-08" ], "lastYear": 3, "from": "GitHub releases" }, "bioregistry": { "prefix": "addicto", "name": "Addiction Ontology", "mappings": { "ols": "addicto" }, "dependsOn": [], "appearsIn": [], "license": null, "version": "2026-10-08", "deprecated": false, "page": "https://bioregistry.io/addicto", "source": "https://bioregistry.io/api/registry/addicto", "fetchedAt": "2026-10-25T19:10:28.634Z" }, "artifact": { "source": "https://raw.githubusercontent.com/addiction-ssa/addiction-ontology/master/addicto.owl", "versionIri": "http://addictovocab.org/addicto.owl/2026-10-08", "etag": "\"ea05b6e08ee7c8b659634c47a5bbf196afc338dd41487a53e34c08f712eba382\"", "contentType": "text/plain", "fetchedAt": "2026-10-25T19:10:29.985Z" }, "score": 62, "gross": 62, "earned": 62, "possible": 100, "qualityApplies": true, "penalty": { "score": 0, "reason": "active (last activity 2026-10-08)", "steps": [ { "label": "Time since last activity", "pts": 0, "detail": "0.0 years → 4 × max(0, 0.0 − 1)" }, { "label": "Inactive status", "pts": 0, "detail": "not archived, legacy or inactive" } ] }, "grade": "C", "fair": 31, "breakdown": { "findable": { "score": 3, "max": 12, "steps": [ { "label": "Persistent identifier (F1)", "pts": 0, "max": 4, "detail": "no PURL / w3id / DOI for the artefact" }, { "label": "Indexed in services (F4)", "pts": 3, "max": 5, "detail": "2: OLS, Bioregistry" }, { "label": "Citable reference (F2)", "pts": 0, "max": 3, "detail": "no reference publication listed" } ], "notes": [ "Persistent identifier (F1): no PURL / w3id / DOI for the artefact", "Indexed in services (F4): 2: OLS, Bioregistry", "Citable reference (F2): no reference publication listed" ] }, "accessible": { "score": 12, "max": 12, "steps": [ { "label": "Homepage reachable", "pts": 3, "max": 3, "detail": "HTTP 200" }, { "label": "Artefact retrievable over HTTP(S) (A1)", "pts": 6, "max": 6, "detail": "download HTTP 200" }, { "label": "Metadata persists in a registry (A2)", "pts": 3, "max": 3, "detail": "Bioregistry" } ], "notes": [] }, "interoperable": { "score": 12, "max": 12, "steps": [ { "label": "Formal machine-readable format (I1)", "pts": 5, "max": 5, "detail": "OWL" }, { "label": "Semantic-web IRIs (I2)", "pts": 3, "max": 3, "detail": "OWL" }, { "label": "References other vocabularies (I3)", "pts": 4, "max": 4, "detail": "imports 23: bcio, bfo, chebi, chmo, cob, doid, envo, gaz…" } ], "notes": [] }, "reusable": { "score": 4, "max": 12, "steps": [ { "label": "Clear license (R1.1)", "pts": 0, "max": 5, "detail": "none found" }, { "label": "Release provenance (R1.2)", "pts": 4, "max": 4, "detail": "2026-10-08 (version IRI in the artefact)" }, { "label": "Community standards (R1.3)", "pts": 0, "max": 3, "detail": "no independent compliance report (not on the OBO Dashboard)" } ], "notes": [ "Clear license (R1.1): none found", "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)" ] }, "quality": { "score": 16, "max": 20, "steps": [ { "label": "Upper-ontology alignment", "pts": 4, "max": 4, "detail": "imports BFO, COB" }, { "label": "Standard relations (RO)", "pts": 2, "max": 2, "detail": "imports RO" }, { "label": "Logical consistency", "pts": 6, "max": 6, "detail": "consistent, 0 unsatisfiable classes (ROBOT ELK (NeuroSchema CI))" }, { "label": "ROBOT report: no errors", "pts": 0, "max": 2, "detail": "488 errors" }, { "label": "ROBOT report: warning density", "pts": 1, "max": 2, "detail": "279 warnings / 1376 classes = 0.20" }, { "label": "Scaled 13/16 → 20", "pts": 3, "max": 0, "detail": "OOPS! pitfall scan unavailable for this run" } ], "notes": [ "ROBOT report: no errors: 488 errors", "ROBOT report: warning density: 279 warnings / 1376 classes = 0.20", "OOPS! unavailable — excluded and Q scaled" ] }, "maintenance": { "score": 13, "max": 16, "steps": [ { "label": "Recency", "pts": 10, "max": 10, "detail": "2026-10-08 → 0.6 months (≤ 3 months)" }, { "label": "Release cadence (12 months)", "pts": 3, "max": 6, "detail": "3 releases (GitHub releases)" } ], "notes": [ "Release cadence (12 months): 3 releases (GitHub releases)" ] }, "adoption": { "score": 2, "max": 16, "steps": [ { "label": "Documented adopting projects", "pts": 0, "max": 7, "detail": "0 projects" }, { "label": "Reused by other ontologies", "pts": 1, "max": 4, "detail": "2: bcio, gmho" }, { "label": "Community signal", "pts": 1, "max": 5, "detail": "max(stars 8 → 1, citations 0 → 0)" } ], "notes": [ "Documented adopting projects: 0 projects", "Reused by other ontologies: 2: bcio, gmho", "Community signal: max(stars 8 → 1, citations 0 → 0)" ] } }, "lastActivity": "2026-10-08T14:05:36Z", "adopterCount": 0, "reuseCount": 2, "importCount": 23, "registries": [ "OLS", "Bioregistry" ], "evaluatedVersion": { "label": "2026-10-08", "from": "version IRI in the artefact", "value": "http://addictovocab.org/addicto.owl/2026-10-08", "inArtefact": true, "all": [ { "label": "2026-10-08", "from": "version IRI in the artefact", "value": "http://addictovocab.org/addicto.owl/2026-10-08", "inArtefact": true }, { "label": "2026-10-08", "from": "OLS", "value": "http://addictovocab.org/addicto.owl/2026-10-08" }, { "label": "v2026-10-08", "from": "latest GitHub release", "value": "https://github.com/addicto-org/addiction-ontology/releases/tag/v2026-10-08" }, { "label": "v2026-10-08 + commit c43fc3c", "from": "latest release tag; master evaluated at commit", "value": "c43fc3cb78964c334605e50d8356d0ecebcd7305", "release": "v2026-10-08" }, { "label": "commit c43fc3c", "from": "master at evaluation time", "value": "c43fc3cb78964c334605e50d8356d0ecebcd7305" } ] }, "evaluatedAt": "2026-10-25T19:10:30.278Z", "runId": "2026-10-25T19-10-16Z", "adopters": [] }, "history": [ { "runId": "2026-10-25T18-49-23Z", "at": "2026-10-25T18:49:29.686Z", "score": 54, "grade": "D", "fair": 31, "version": "2026-10-08", "terms": 1376, "stars": 8, "license": null, "lastActivity": "2026-10-08T14:05:35Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json" }, { "runId": "2026-10-25T19-10-16Z", "at": "2026-10-25T19:10:30.278Z", "score": 62, "grade": "C", "fair": 31, "version": "2026-10-08", "terms": 1376, "stars": 8, "license": null, "lastActivity": "2026-10-08T14:05:36Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.0", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json" }, { "runId": "2026-10-25T19-23-53Z", "at": "2026-10-25T19:23:56.746Z", "score": 51, "grade": "D", "fair": 31, "version": "2026-10-08", "terms": 1376, "stars": 8, "license": null, "lastActivity": "2026-10-08T14:05:35Z", "adopters": 0, "links": { "homepage": "ok", "repository": "ok", "download": "ok" }, "archived": false, "rubric": "3.3", "snapshot": "https://neuroschema.org/runs/2026-10-25T19-23-53Z.json" } ], "changes": [ { "at": "2026-10-25T19:23:56.746Z", "runId": "2026-10-25T19-23-53Z", "what": "Score: 62 → 51 (grade C → D) · rubric v3.0 → v3.3" }, { "at": "2026-10-25T19:10:30.278Z", "runId": "2026-10-25T19-10-16Z", "what": "Score: 54 → 62 (grade D → C)" } ], "provenance": { "@context": { "prov": "http://www.w3.org/ns/prov#", "neuroschema": "https://neuroschema.org/ns#" }, "@id": "https://neuroschema.org/o/addicto/#evaluation", "@type": "prov:Entity", "prov:specializationOf": { "@id": "http://addictovocab.org/addicto.owl", "neuroschema:evaluatedVersion": "http://addictovocab.org/addicto.owl/2026-10-08" }, "prov:wasGeneratedBy": { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z", "@type": "prov:Activity", "prov:startedAtTime": "2026-10-25T19:10:16.517Z", "prov:endedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasAssociatedWith": { "@id": "https://neuroschema.org/ns#evaluator", "@type": "prov:SoftwareAgent", "neuroschema:version": "2.0.0" }, "prov:used": [ { "@id": "https://addictovocab.org", "prov:atTime": "2026-10-25T19:10:29.159Z" }, { "@id": "https://github.com/addicto-org/addiction-ontology", "prov:atTime": "2026-10-25T19:10:29.081Z" }, { "@id": "http://addictovocab.org/addicto.owl", "prov:atTime": "2026-10-25T19:10:29.821Z" }, { "@id": "https://raw.githubusercontent.com/addiction-ssa/addiction-ontology/master/addicto.owl", "prov:atTime": "2026-10-25T19:10:29.985Z" }, { "@id": "https://github.com/addicto-org/addiction-ontology.git/info/refs?service=git-upload-pack", "prov:atTime": "2026-10-25T19:10:28.847Z" }, { "@id": "https://api.github.com/repos/addicto-org/addiction-ontology", "prov:atTime": "2026-10-25T19:10:29.125Z" }, { "@id": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/addicto", "prov:atTime": "2026-10-25T19:10:28.769Z" }, { "@id": "https://bioregistry.io/api/registry/addicto", "prov:atTime": "2026-10-25T19:10:28.634Z" } ] }, "prov:generatedAtTime": "2026-10-25T19:10:30.278Z", "prov:wasRevisionOf": [ { "@id": "https://neuroschema.org/runs/2026-10-25T18-49-23Z.json#addicto" }, { "@id": "https://neuroschema.org/runs/2026-10-25T19-10-16Z.json#addicto" } ] } } ] }